Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18b' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9050709-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.3 PID: 8542 Logging PID: 8543 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 9050709, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '59eb76b6d3a3c751cc6f9a9a030647931f0147dc', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/COPASI', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'COPASI', 'package_version': '4.45.298-3', 'project_dirname': 'python3.12', 'project_name': 'python3.12', 'project_owner': '@python', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.12/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': '@python/python3.12--https://src.fedoraproject.org/user/sagitter', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/sagitter', 'tags': [], 'task_id': '9050709-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/COPASI /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/COPASI', '/var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI'... Running: git checkout 59eb76b6d3a3c751cc6f9a9a030647931f0147dc -- cmd: ['git', 'checkout', '59eb76b6d3a3c751cc6f9a9a030647931f0147dc', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI rc: 0 stdout: stderr: Note: switching to '59eb76b6d3a3c751cc6f9a9a030647931f0147dc'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 59eb76b automatic import of COPASI Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading COPASI-Build-298.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o COPASI-Build-298.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/COPASI/COPASI-Build-298.tar.gz/md5/edd8c69ff57a90eecb2b0ee51443291d/COPASI-Build-298.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.4M 100 25.4M 0 0 4763k 0 0:00:05 0:00:05 --:--:-- 4337k INFO: Reading stdout from command: md5sum COPASI-Build-298.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI/COPASI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1747326677.647336 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI/COPASI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1747326677.647336 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI/COPASI.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1747326677.647336/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.13.1-1.fc41.x86_64 dnf5-plugins-5.2.13.1-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 9.5 MiB/s | 13.5 MiB | 00m01s fedora 100% | 31.0 MiB/s | 35.4 MiB | 00m01s Copr repository 100% | 3.8 MiB/s | 3.5 MiB | 00m01s Additional repo http_kojipkgs_fedorapr 100% | 48.0 MiB/s | 14.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.2 MiB bzip2 x86_64 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 99.3 KiB coreutils x86_64 9.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.4 MiB cpio x86_64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils x86_64 3.12-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release-common noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.4 KiB findutils x86_64 1:4.10.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk x86_64 5.3.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB glibc-minimal-langpack x86_64 2.41.9000-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep x86_64 3.12-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip x86_64 1.13-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 392.9 KiB info x86_64 7.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.9 KiB patch x86_64 2.8-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 226.8 KiB redhat-rpm-config noarch 343-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.5 KiB rpm-build x86_64 5.99.90-5.fc43 copr_base 281.7 KiB sed x86_64 4.9-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 857.3 KiB shadow-utils x86_64 2:4.17.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar x86_64 2:1.35-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip x86_64 6.0-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.3 KiB util-linux x86_64 2.41-2.fc43 copr_base 3.5 MiB which x86_64 2.23-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.4 KiB xz x86_64 1:5.8.1-2.fc41 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB alternatives x86_64 1.33-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs x86_64 4.0.3-2.fc43 copr_base 347.1 KiB binutils x86_64 2.44-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.9 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs x86_64 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.6 KiB ca-certificates noarch 2024.2.69_v8.0.401-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB coreutils-common x86_64 9.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB crypto-policies noarch 20250402-2.git86c0178.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.5 KiB curl x86_64 8.14.0~rc1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 473.2 KiB cyrus-sasl-lib x86_64 2.1.28-30.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.1-6.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB dwz x86_64 0.15-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291.0 KiB ed x86_64 1.21-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.5 KiB efi-srpm-macros noarch 6-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.193-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB elfutils-debuginfod-client x86_64 0.193-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.9 KiB elfutils-default-yama-scope noarch 0.193-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.193-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.193-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 683.4 KiB fedora-gpg-keys noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.0 KiB fedora-release noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 664.0 B fedora-repos noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file x86_64 5.46-1.fc42 copr_base 100.2 KiB file-libs x86_64 5.46-1.fc42 copr_base 11.9 MiB filesystem x86_64 3.18-44.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B filesystem-srpm-macros noarch 3.18-44.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-21.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal x86_64 16.3-1.fc43 copr_base 13.2 MiB gdbm-libs x86_64 1:1.23-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.9 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0 B glibc x86_64 2.41.9000-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 MiB glibc-common x86_64 2.41.9000-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra x86_64 2.41.9000-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB gmp x86_64 1:6.3.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 819.2 KiB gnat-srpm-macros noarch 6-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB gnupg2 x86_64 2.4.7-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.8 MiB gnutls x86_64 3.8.9-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 MiB go-srpm-macros noarch 3.6.0-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.8 KiB gpgverify noarch 2.1-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.7 KiB jansson x86_64 2.14-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.1 KiB json-c x86_64 0.18-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 86.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB keyutils-libs x86_64 1.6.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58.3 KiB krb5-libs x86_64 1.21.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB libacl x86_64 2.3.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.3 KiB libarchive x86_64 3.7.7-4.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 930.6 KiB libassuan x86_64 2.5.7-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167.8 KiB libattr x86_64 2.5.2-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27.1 KiB libblkid x86_64 2.41-2.fc43 copr_base 262.4 KiB libbrotli x86_64 1.1.0-6.fc42 copr_base 841.3 KiB libcap x86_64 2.76-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.2 KiB libcap-ng x86_64 0.8.5-4.fc42 copr_base 72.9 KiB libcom_err x86_64 1.47.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.1 KiB libcurl x86_64 8.14.0~rc1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 891.0 KiB libeconf x86_64 0.7.6-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.6 KiB libevent x86_64 2.1.12-15.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 903.1 KiB libfdisk x86_64 2.41-2.fc43 copr_base 376.4 KiB libffi x86_64 3.4.8-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.0 KiB libfsverity x86_64 1.6-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.5 KiB libgcc x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.6 KiB libgcrypt x86_64 1.11.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB libgomp x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 538.5 KiB libgpg-error x86_64 1.55-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 915.3 KiB libidn2 x86_64 2.3.8-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.5 KiB libksba x86_64 1.6.7-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 402.5 KiB liblastlog2 x86_64 2.41-2.fc43 copr_base 33.9 KiB libmount x86_64 2.41-2.fc43 copr_base 372.7 KiB libnghttp2 x86_64 1.65.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.2 KiB libpkgconf x86_64 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.1 KiB libpsl x86_64 0.21.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.4 KiB libselinux x86_64 3.8-1.fc42 copr_base 193.1 KiB libsemanage x86_64 3.8-1.fc42 copr_base 308.4 KiB libsepol x86_64 3.8-1.fc42 copr_base 826.0 KiB libsmartcols x86_64 2.41-2.fc43 copr_base 180.5 KiB libssh x86_64 0.11.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 565.5 KiB libssh-config noarch 0.11.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 x86_64 4.20.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 176.3 KiB libtool-ltdl x86_64 2.5.4-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70.1 KiB libunistring x86_64 1.1-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libusb1 x86_64 1.0.28-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 171.0 KiB libuuid x86_64 2.41-2.fc43 copr_base 37.3 KiB libverto x86_64 0.3.2-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.4 KiB libxcrypt x86_64 4.4.38-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 284.5 KiB libxml2 x86_64 2.12.10-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libzstd x86_64 1.5.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 807.8 KiB lua-libs x86_64 5.4.7-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276.9 KiB lua-srpm-macros noarch 1-15.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs x86_64 1.10.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 157.4 KiB mpfr x86_64 4.2.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 828.8 KiB ncurses-base noarch 6.5-5.20250125.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.8 KiB ncurses-libs x86_64 6.5-5.20250125.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 946.3 KiB nettle x86_64 3.10.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 790.5 KiB npth x86_64 1.8-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 49.6 KiB ocaml-srpm-macros noarch 10-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.9-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.1 KiB openssl-libs x86_64 1:3.5.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 MiB p11-kit x86_64 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 395.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam-libs x86_64 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.7 KiB pcre2 x86_64 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 697.7 KiB pcre2-syntax noarch 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 273.9 KiB perl-srpm-macros noarch 1-57.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.5 KiB pyproject-srpm-macros noarch 1.18.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.7 KiB qt5-srpm-macros noarch 5.15.16-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.9.0-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 464.0 B readline x86_64 8.2-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.0 KiB rpm x86_64 5.99.90-5.fc43 copr_base 3.1 MiB rpm-build-libs x86_64 5.99.90-5.fc43 copr_base 264.4 KiB rpm-libs x86_64 5.99.90-5.fc43 copr_base 929.8 KiB rpm-sequoia x86_64 1.8.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB rpm-sign-libs x86_64 5.99.90-5.fc43 copr_base 39.7 KiB rust-srpm-macros noarch 26.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-25.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 725.0 KiB sqlite-libs x86_64 3.49.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs x86_64 257.5-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB systemd-standalone-sysusers x86_64 257.5-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.3 KiB tpm2-tss x86_64 4.1.3-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB tree-sitter-srpm-macros noarch 0.2.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 KiB util-linux-core x86_64 2.41-2.fc43 copr_base 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc41 updates 217.9 KiB zig-srpm-macros noarch 1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-43.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 698.5 KiB zlib-ng-compat x86_64 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.6 KiB zstd x86_64 1.5.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 163 packages Total size of inbound packages is 58 MiB. Need to download 58 MiB. After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B). [ 1/163] bzip2-0:1.0.8-20.fc42.x86_64 100% | 694.2 KiB/s | 52.1 KiB | 00m00s [ 2/163] coreutils-0:9.7-1.fc43.x86_64 100% | 11.0 MiB/s | 1.1 MiB | 00m00s [ 3/163] bash-0:5.2.37-3.fc43.x86_64 100% | 14.9 MiB/s | 1.8 MiB | 00m00s [ 4/163] cpio-0:2.15-2.fc41.x86_64 100% | 6.2 MiB/s | 285.2 KiB | 00m00s [ 5/163] diffutils-0:3.12-2.fc43.x86_6 100% | 17.9 MiB/s | 384.5 KiB | 00m00s [ 6/163] fedora-release-common-0:43-0. 100% | 1.5 MiB/s | 26.3 KiB | 00m00s [ 7/163] findutils-1:4.10.0-5.fc42.x86 100% | 24.1 MiB/s | 542.7 KiB | 00m00s [ 8/163] glibc-minimal-langpack-0:2.41 100% | 1.3 MiB/s | 24.0 KiB | 00m00s [ 9/163] gawk-0:5.3.2-1.fc43.x86_64 100% | 28.5 MiB/s | 1.1 MiB | 00m00s [ 10/163] grep-0:3.12-1.fc43.x86_64 100% | 14.1 MiB/s | 289.5 KiB | 00m00s [ 11/163] gzip-0:1.13-3.fc42.x86_64 100% | 8.9 MiB/s | 164.2 KiB | 00m00s [ 12/163] info-0:7.2-3.fc42.x86_64 100% | 10.0 MiB/s | 183.8 KiB | 00m00s [ 13/163] patch-0:2.8-1.fc43.x86_64 100% | 6.2 MiB/s | 113.7 KiB | 00m00s [ 14/163] redhat-rpm-config-0:343-5.fc4 100% | 4.2 MiB/s | 73.1 KiB | 00m00s [ 15/163] sed-0:4.9-4.fc42.x86_64 100% | 14.4 MiB/s | 308.8 KiB | 00m00s [ 16/163] shadow-utils-2:4.17.4-1.fc43. 100% | 40.7 MiB/s | 1.3 MiB | 00m00s [ 17/163] tar-2:1.35-5.fc42.x86_64 100% | 26.9 MiB/s | 853.9 KiB | 00m00s [ 18/163] rpm-build-0:5.99.90-5.fc43.x8 100% | 2.3 MiB/s | 126.1 KiB | 00m00s [ 19/163] unzip-0:6.0-66.fc42.x86_64 100% | 8.6 MiB/s | 184.6 KiB | 00m00s [ 20/163] which-0:2.23-1.fc42.x86_64 100% | 2.4 MiB/s | 41.7 KiB | 00m00s [ 21/163] util-linux-0:2.41-2.fc43.x86_ 100% | 21.6 MiB/s | 1.1 MiB | 00m00s [ 22/163] coreutils-common-0:9.7-1.fc43 100% | 39.2 MiB/s | 2.1 MiB | 00m00s [ 23/163] fedora-repos-0:43-0.2.noarch 100% | 369.2 KiB/s | 9.2 KiB | 00m00s [ 24/163] filesystem-0:3.18-44.fc43.x86 100% | 24.8 MiB/s | 1.3 MiB | 00m00s [ 25/163] glibc-common-0:2.41.9000-13.f 100% | 14.2 MiB/s | 306.0 KiB | 00m00s [ 26/163] filesystem-srpm-macros-0:3.18 100% | 1.2 MiB/s | 26.0 KiB | 00m00s [ 27/163] glibc-0:2.41.9000-13.fc43.x86 100% | 38.1 MiB/s | 2.2 MiB | 00m00s [ 28/163] libblkid-0:2.41-2.fc43.x86_64 100% | 8.0 MiB/s | 123.4 KiB | 00m00s [ 29/163] libfdisk-0:2.41-2.fc43.x86_64 100% | 8.7 MiB/s | 160.9 KiB | 00m00s [ 30/163] liblastlog2-0:2.41-2.fc43.x86 100% | 1.9 MiB/s | 23.2 KiB | 00m00s [ 31/163] libmount-0:2.41-2.fc43.x86_64 100% | 11.4 MiB/s | 162.8 KiB | 00m00s [ 32/163] libsmartcols-0:2.41-2.fc43.x8 100% | 4.9 MiB/s | 84.5 KiB | 00m00s [ 33/163] libuuid-0:2.41-2.fc43.x86_64 100% | 2.2 MiB/s | 26.7 KiB | 00m00s [ 34/163] util-linux-core-0:2.41-2.fc43 100% | 10.8 MiB/s | 533.3 KiB | 00m00s [ 35/163] fedora-gpg-keys-0:43-0.2.noar 100% | 6.8 MiB/s | 125.8 KiB | 00m00s [ 36/163] fedora-repos-rawhide-0:43-0.2 100% | 517.9 KiB/s | 8.8 KiB | 00m00s [ 37/163] glibc-gconv-extra-0:2.41.9000 100% | 37.4 MiB/s | 1.5 MiB | 00m00s [ 38/163] bzip2-libs-0:1.0.8-20.fc42.x8 100% | 2.5 MiB/s | 43.6 KiB | 00m00s [ 39/163] libacl-0:2.3.2-3.fc42.x86_64 100% | 1.2 MiB/s | 23.0 KiB | 00m00s [ 40/163] libselinux-0:3.8-1.fc42.x86_6 100% | 9.5 MiB/s | 97.6 KiB | 00m00s [ 41/163] audit-libs-0:4.0.3-2.fc43.x86 100% | 12.6 MiB/s | 128.9 KiB | 00m00s [ 42/163] libxcrypt-0:4.4.38-7.fc43.x86 100% | 6.5 MiB/s | 127.2 KiB | 00m00s [ 43/163] pam-libs-0:1.7.0-4.fc42.x86_6 100% | 3.4 MiB/s | 58.3 KiB | 00m00s [ 44/163] libeconf-0:0.7.6-1.fc43.x86_6 100% | 1.9 MiB/s | 35.2 KiB | 00m00s [ 45/163] setup-0:2.15.0-25.fc43.noarch 100% | 8.2 MiB/s | 151.5 KiB | 00m00s [ 46/163] libsemanage-0:3.8-1.fc42.x86_ 100% | 11.0 MiB/s | 124.1 KiB | 00m00s [ 47/163] build-reproducibility-srpm-ma 100% | 584.2 KiB/s | 11.7 KiB | 00m00s [ 48/163] add-determinism-0:0.6.0-1.fc4 100% | 27.2 MiB/s | 918.3 KiB | 00m00s [ 49/163] efi-srpm-macros-0:6-3.fc43.no 100% | 1.3 MiB/s | 22.5 KiB | 00m00s [ 50/163] forge-srpm-macros-0:0.4.0-2.f 100% | 1.1 MiB/s | 19.9 KiB | 00m00s [ 51/163] go-srpm-macros-0:3.6.0-7.fc43 100% | 1.6 MiB/s | 27.6 KiB | 00m00s [ 52/163] xz-libs-1:5.8.1-2.fc41.x86_64 100% | 292.8 KiB/s | 112.4 KiB | 00m00s [ 53/163] pyproject-srpm-macros-0:1.18. 100% | 869.1 KiB/s | 13.9 KiB | 00m00s [ 54/163] qt6-srpm-macros-0:6.9.0-2.fc4 100% | 586.4 KiB/s | 9.4 KiB | 00m00s [ 55/163] xz-1:5.8.1-2.fc41.x86_64 100% | 967.7 KiB/s | 572.9 KiB | 00m01s [ 56/163] rpm-0:5.99.90-5.fc43.x86_64 100% | 32.2 MiB/s | 527.6 KiB | 00m00s [ 57/163] tree-sitter-srpm-macros-0:0.2 100% | 732.5 KiB/s | 12.5 KiB | 00m00s [ 58/163] ansible-srpm-macros-0:1-17.1. 100% | 1.2 MiB/s | 20.3 KiB | 00m00s [ 59/163] dwz-0:0.15-9.fc42.x86_64 100% | 7.8 MiB/s | 135.7 KiB | 00m00s [ 60/163] file-0:5.46-1.fc42.x86_64 100% | 4.8 MiB/s | 49.2 KiB | 00m00s [ 61/163] fonts-srpm-macros-1:2.0.5-21. 100% | 1.7 MiB/s | 27.1 KiB | 00m00s [ 62/163] fpc-srpm-macros-0:1.3-14.fc42 100% | 471.7 KiB/s | 8.0 KiB | 00m00s [ 63/163] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 538.6 KiB/s | 9.2 KiB | 00m00s [ 64/163] gnat-srpm-macros-0:6-7.fc42.n 100% | 538.2 KiB/s | 8.6 KiB | 00m00s [ 65/163] kernel-srpm-macros-0:1.0-25.f 100% | 616.9 KiB/s | 9.9 KiB | 00m00s [ 66/163] lua-srpm-macros-0:1-15.fc42.n 100% | 524.5 KiB/s | 8.9 KiB | 00m00s [ 67/163] ocaml-srpm-macros-0:10-4.fc42 100% | 575.3 KiB/s | 9.2 KiB | 00m00s [ 68/163] openblas-srpm-macros-0:2-19.f 100% | 485.4 KiB/s | 7.8 KiB | 00m00s [ 69/163] package-notes-srpm-macros-0:0 100% | 578.7 KiB/s | 9.3 KiB | 00m00s [ 70/163] perl-srpm-macros-0:1-57.fc42. 100% | 531.6 KiB/s | 8.5 KiB | 00m00s [ 71/163] qt5-srpm-macros-0:5.15.16-1.f 100% | 549.1 KiB/s | 8.8 KiB | 00m00s [ 72/163] python-srpm-macros-0:3.13-5.f 100% | 1.3 MiB/s | 23.2 KiB | 00m00s [ 73/163] rust-srpm-macros-0:26.3-4.fc4 100% | 731.6 KiB/s | 11.7 KiB | 00m00s [ 74/163] zig-srpm-macros-0:1-4.fc42.no 100% | 515.3 KiB/s | 8.2 KiB | 00m00s [ 75/163] ed-0:1.21-2.fc42.x86_64 100% | 4.7 MiB/s | 82.0 KiB | 00m00s [ 76/163] zip-0:3.0-43.fc42.x86_64 100% | 10.7 MiB/s | 263.5 KiB | 00m00s [ 77/163] libattr-0:2.5.2-5.fc42.x86_64 100% | 854.2 KiB/s | 17.1 KiB | 00m00s [ 78/163] ncurses-libs-0:6.5-5.20250125 100% | 16.4 MiB/s | 335.0 KiB | 00m00s [ 79/163] ncurses-base-0:6.5-5.20250125 100% | 3.1 MiB/s | 63.5 KiB | 00m00s [ 80/163] pcre2-0:10.45-1.fc43.x86_64 100% | 13.5 MiB/s | 262.8 KiB | 00m00s [ 81/163] pcre2-syntax-0:10.45-1.fc43.n 100% | 8.3 MiB/s | 161.7 KiB | 00m00s [ 82/163] libgcc-0:15.1.1-1.fc43.x86_64 100% | 6.5 MiB/s | 126.4 KiB | 00m00s [ 83/163] gmp-1:6.3.0-3.fc43.x86_64 100% | 15.7 MiB/s | 322.2 KiB | 00m00s [ 84/163] mpfr-0:4.2.2-1.fc43.x86_64 100% | 16.1 MiB/s | 346.7 KiB | 00m00s [ 85/163] readline-0:8.2-13.fc43.x86_64 100% | 9.5 MiB/s | 212.9 KiB | 00m00s [ 86/163] elfutils-libelf-0:0.193-2.fc4 100% | 8.1 MiB/s | 207.9 KiB | 00m00s [ 87/163] elfutils-debuginfod-client-0: 100% | 2.7 MiB/s | 47.0 KiB | 00m00s [ 88/163] elfutils-0:0.193-2.fc43.x86_6 100% | 24.0 MiB/s | 566.3 KiB | 00m00s [ 89/163] elfutils-libs-0:0.193-2.fc43. 100% | 13.2 MiB/s | 270.2 KiB | 00m00s [ 90/163] libcap-0:2.76-1.fc43.x86_64 100% | 3.4 MiB/s | 86.9 KiB | 00m00s [ 91/163] openssl-libs-1:3.5.0-3.fc43.x 100% | 48.3 MiB/s | 2.6 MiB | 00m00s [ 92/163] systemd-libs-0:257.5-5.fc43.x 100% | 15.1 MiB/s | 788.8 KiB | 00m00s [ 93/163] zlib-ng-compat-0:2.2.4-2.fc43 100% | 3.7 MiB/s | 79.1 KiB | 00m00s [ 94/163] libcap-ng-0:0.8.5-4.fc42.x86_ 100% | 2.9 MiB/s | 32.7 KiB | 00m00s [ 95/163] jansson-0:2.14-2.fc42.x86_64 100% | 2.3 MiB/s | 45.7 KiB | 00m00s [ 96/163] alternatives-0:1.33-1.fc43.x8 100% | 2.0 MiB/s | 40.5 KiB | 00m00s [ 97/163] debugedit-0:5.1-6.fc43.x86_64 100% | 3.8 MiB/s | 78.7 KiB | 00m00s [ 98/163] libarchive-0:3.7.7-4.fc43.x86 100% | 15.5 MiB/s | 411.7 KiB | 00m00s [ 99/163] libstdc++-0:15.1.1-1.fc43.x86 100% | 24.0 MiB/s | 911.1 KiB | 00m00s [100/163] binutils-0:2.44-3.fc43.x86_64 100% | 56.7 MiB/s | 5.8 MiB | 00m00s [101/163] rpm-build-libs-0:5.99.90-5.fc 100% | 2.8 MiB/s | 128.0 KiB | 00m00s [102/163] pkgconf-pkg-config-0:2.3.0-2. 100% | 620.3 KiB/s | 9.9 KiB | 00m00s [103/163] zstd-0:1.5.7-1.fc43.x86_64 100% | 19.0 MiB/s | 485.8 KiB | 00m00s [104/163] pkgconf-0:2.3.0-2.fc42.x86_64 100% | 2.6 MiB/s | 44.9 KiB | 00m00s [105/163] rpm-libs-0:5.99.90-5.fc43.x86 100% | 6.9 MiB/s | 400.4 KiB | 00m00s [106/163] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 790.9 KiB/s | 14.2 KiB | 00m00s [107/163] libpkgconf-0:2.3.0-2.fc42.x86 100% | 2.1 MiB/s | 38.4 KiB | 00m00s [108/163] popt-0:1.19-8.fc42.x86_64 100% | 3.4 MiB/s | 59.4 KiB | 00m00s [109/163] curl-0:8.14.0~rc1-1.fc43.x86_ 100% | 12.0 MiB/s | 233.6 KiB | 00m00s [110/163] libsepol-0:3.8-1.fc42.x86_64 100% | 26.2 MiB/s | 349.4 KiB | 00m00s [111/163] file-libs-0:5.46-1.fc42.x86_6 100% | 33.2 MiB/s | 849.9 KiB | 00m00s [112/163] sqlite-libs-0:3.49.1-1.fc43.x 100% | 22.9 MiB/s | 749.8 KiB | 00m00s [113/163] lz4-libs-0:1.10.0-2.fc42.x86_ 100% | 3.2 MiB/s | 78.1 KiB | 00m00s [114/163] crypto-policies-0:20250402-2. 100% | 4.0 MiB/s | 73.8 KiB | 00m00s [115/163] libxml2-0:2.12.10-1.fc43.x86_ 100% | 17.5 MiB/s | 682.9 KiB | 00m00s [116/163] libzstd-0:1.5.7-1.fc43.x86_64 100% | 14.0 MiB/s | 314.8 KiB | 00m00s [117/163] ca-certificates-0:2024.2.69_v 100% | 22.5 MiB/s | 945.0 KiB | 00m00s [118/163] elfutils-default-yama-scope-0 100% | 786.6 KiB/s | 12.6 KiB | 00m00s [119/163] json-c-0:0.18-2.fc42.x86_64 100% | 2.6 MiB/s | 44.9 KiB | 00m00s [120/163] libffi-0:3.4.8-1.fc43.x86_64 100% | 2.5 MiB/s | 40.5 KiB | 00m00s [121/163] p11-kit-trust-0:0.25.5-5.fc42 100% | 6.8 MiB/s | 132.6 KiB | 00m00s [122/163] p11-kit-0:0.25.5-5.fc42.x86_6 100% | 20.3 MiB/s | 478.0 KiB | 00m00s [123/163] lua-libs-0:5.4.7-3.fc43.x86_6 100% | 6.1 MiB/s | 130.4 KiB | 00m00s [124/163] rpm-sign-libs-0:5.99.90-5.fc4 100% | 2.4 MiB/s | 29.7 KiB | 00m00s [125/163] libgomp-0:15.1.1-1.fc43.x86_6 100% | 11.8 MiB/s | 363.1 KiB | 00m00s [126/163] rpm-sequoia-0:1.8.0-1.fc43.x8 100% | 27.8 MiB/s | 938.8 KiB | 00m00s [127/163] libtasn1-0:4.20.0-1.fc43.x86_ 100% | 3.5 MiB/s | 75.0 KiB | 00m00s [128/163] gpgverify-0:2.1-3.fc43.noarch 100% | 672.0 KiB/s | 10.8 KiB | 00m00s [129/163] ima-evm-utils-libs-0:1.6.2-5. 100% | 1.4 MiB/s | 29.5 KiB | 00m00s [130/163] libfsverity-0:1.6-2.fc42.x86_ 100% | 1.1 MiB/s | 18.8 KiB | 00m00s [131/163] tpm2-tss-0:4.1.3-7.fc43.x86_6 100% | 14.6 MiB/s | 418.8 KiB | 00m00s [132/163] gnupg2-0:2.4.7-3.fc43.x86_64 100% | 43.5 MiB/s | 2.7 MiB | 00m00s [133/163] nettle-0:3.10.1-1.fc43.x86_64 100% | 18.0 MiB/s | 424.6 KiB | 00m00s [134/163] openldap-0:2.6.9-5.fc43.x86_6 100% | 11.0 MiB/s | 258.6 KiB | 00m00s [135/163] gnutls-0:3.8.9-5.fc43.x86_64 100% | 23.2 MiB/s | 1.2 MiB | 00m00s [136/163] libassuan-0:2.5.7-3.fc42.x86_ 100% | 3.3 MiB/s | 67.6 KiB | 00m00s [137/163] libgpg-error-0:1.55-1.fc43.x8 100% | 11.7 MiB/s | 238.9 KiB | 00m00s [138/163] libgcrypt-0:1.11.1-1.fc43.x86 100% | 21.6 MiB/s | 596.1 KiB | 00m00s [139/163] libksba-0:1.6.7-3.fc42.x86_64 100% | 8.3 MiB/s | 162.0 KiB | 00m00s [140/163] npth-0:1.8-2.fc42.x86_64 100% | 1.6 MiB/s | 25.8 KiB | 00m00s [141/163] libusb1-0:1.0.28-2.fc43.x86_6 100% | 4.6 MiB/s | 79.3 KiB | 00m00s [142/163] libevent-0:2.1.12-15.fc42.x86 100% | 12.1 MiB/s | 260.2 KiB | 00m00s [143/163] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 22.1 MiB/s | 793.5 KiB | 00m00s [144/163] libtool-ltdl-0:2.5.4-4.fc42.x 100% | 1.6 MiB/s | 36.2 KiB | 00m00s [145/163] libidn2-0:2.3.8-1.fc43.x86_64 100% | 8.7 MiB/s | 168.9 KiB | 00m00s [146/163] gdbm-libs-1:1.23-9.fc42.x86_6 100% | 3.1 MiB/s | 57.0 KiB | 00m00s [147/163] libunistring-0:1.1-9.fc42.x86 100% | 20.4 MiB/s | 542.5 KiB | 00m00s [148/163] fedora-release-0:43-0.15.noar 100% | 953.7 KiB/s | 15.3 KiB | 00m00s [149/163] fedora-release-identity-basic 100% | 943.0 KiB/s | 16.0 KiB | 00m00s [150/163] libcurl-0:8.14.0~rc1-1.fc43.x 100% | 18.5 MiB/s | 397.5 KiB | 00m00s [151/163] libnghttp2-0:1.65.0-1.fc43.x8 100% | 3.7 MiB/s | 72.6 KiB | 00m00s [152/163] libssh-0:0.11.1-4.fc42.x86_64 100% | 10.4 MiB/s | 233.3 KiB | 00m00s [153/163] libssh-config-0:0.11.1-4.fc42 100% | 562.7 KiB/s | 9.0 KiB | 00m00s [154/163] systemd-standalone-sysusers-0 100% | 6.9 MiB/s | 133.8 KiB | 00m00s [155/163] xxhash-libs-0:0.8.3-2.fc42.x8 100% | 2.1 MiB/s | 39.1 KiB | 00m00s [156/163] gdb-minimal-0:16.3-1.fc43.x86 100% | 58.0 MiB/s | 4.4 MiB | 00m00s [157/163] krb5-libs-0:1.21.3-5.fc42.x86 100% | 14.9 MiB/s | 760.6 KiB | 00m00s [158/163] libbrotli-0:1.1.0-6.fc42.x86_ 100% | 7.2 MiB/s | 340.3 KiB | 00m00s [159/163] libpsl-0:0.21.5-5.fc42.x86_64 100% | 3.7 MiB/s | 64.0 KiB | 00m00s [160/163] keyutils-libs-0:1.6.3-5.fc42. 100% | 1.8 MiB/s | 31.5 KiB | 00m00s [161/163] libcom_err-0:1.47.2-3.fc42.x8 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [162/163] libverto-0:0.3.2-10.fc42.x86_ 100% | 1.2 MiB/s | 20.8 KiB | 00m00s [163/163] publicsuffix-list-dafsa-0:202 100% | 3.4 MiB/s | 58.8 KiB | 00m00s -------------------------------------------------------------------------------- [163/163] Total 100% | 33.0 MiB/s | 58.1 MiB | 00m02s Running transaction Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/165] Verify package files 100% | 721.0 B/s | 163.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-44.fc43.x86_64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-44.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-41-x86_64-1747326677.647336/root/var/cache/dnf/co [ 2/165] Prepare transaction 100% | 1.9 KiB/s | 163.0 B | 00m00s [ 3/165] Installing libgcc-0:15.1.1-1. 100% | 131.0 MiB/s | 268.3 KiB | 00m00s [ 4/165] Installing publicsuffix-list- 100% | 67.6 MiB/s | 69.2 KiB | 00m00s [ 5/165] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/165] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/165] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/165] Installing fedora-gpg-keys-0: 100% | 19.1 MiB/s | 175.9 KiB | 00m00s [ 9/165] Installing fedora-repos-0:43- 100% | 1.9 MiB/s | 5.7 KiB | 00m00s [ 10/165] Installing fedora-release-com 100% | 12.1 MiB/s | 24.7 KiB | 00m00s [ 11/165] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/165] Installing setup-0:2.15.0-25. 100% | 47.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/165] Installing filesystem-0:3.18- 100% | 1.4 MiB/s | 212.5 KiB | 00m00s [ 14/165] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 15/165] Installing pcre2-syntax-0:10. 100% | 54.0 MiB/s | 276.4 KiB | 00m00s [ 16/165] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 352.2 KiB | 00m00s [ 17/165] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/165] Installing ncurses-libs-0:6.5 100% | 77.5 MiB/s | 952.8 KiB | 00m00s [ 19/165] Installing glibc-0:2.41.9000- 100% | 128.4 MiB/s | 6.7 MiB | 00m00s [ 20/165] Installing bash-0:5.2.37-3.fc 100% | 163.6 MiB/s | 8.2 MiB | 00m00s [ 21/165] Installing glibc-common-0:2.4 100% | 44.4 MiB/s | 1.0 MiB | 00m00s [ 22/165] Installing glibc-gconv-extra- 100% | 110.8 MiB/s | 7.3 MiB | 00m00s [ 23/165] Installing zlib-ng-compat-0:2 100% | 33.8 MiB/s | 138.4 KiB | 00m00s [ 24/165] Installing bzip2-libs-0:1.0.8 100% | 83.7 MiB/s | 85.7 KiB | 00m00s [ 25/165] Installing libstdc++-0:15.1.1 100% | 189.1 MiB/s | 2.8 MiB | 00m00s [ 26/165] Installing xz-libs-1:5.8.1-2. 100% | 213.9 MiB/s | 219.0 KiB | 00m00s [ 27/165] Installing libuuid-0:2.41-2.f 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [ 28/165] Installing gmp-1:6.3.0-3.fc43 100% | 114.6 MiB/s | 821.5 KiB | 00m00s [ 29/165] Installing readline-0:8.2-13. 100% | 158.6 MiB/s | 487.1 KiB | 00m00s [ 30/165] Installing popt-0:1.19-8.fc42 100% | 27.2 MiB/s | 139.4 KiB | 00m00s [ 31/165] Installing libblkid-0:2.41-2. 100% | 64.3 MiB/s | 263.5 KiB | 00m00s [ 32/165] Installing libxcrypt-0:4.4.38 100% | 140.2 MiB/s | 287.2 KiB | 00m00s [ 33/165] Installing libzstd-0:1.5.7-1. 100% | 263.4 MiB/s | 809.1 KiB | 00m00s [ 34/165] Installing elfutils-libelf-0: 100% | 166.6 MiB/s | 1.2 MiB | 00m00s [ 35/165] Installing libgpg-error-0:1.5 100% | 21.9 MiB/s | 921.1 KiB | 00m00s [ 36/165] Installing crypto-policies-0: 100% | 14.8 MiB/s | 166.6 KiB | 00m00s [ 37/165] Installing libattr-0:2.5.2-5. 100% | 27.4 MiB/s | 28.1 KiB | 00m00s [ 38/165] Installing libacl-0:2.3.2-3.f 100% | 38.2 MiB/s | 39.2 KiB | 00m00s [ 39/165] Installing sqlite-libs-0:3.49 100% | 167.6 MiB/s | 1.5 MiB | 00m00s [ 40/165] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 41/165] Installing libunistring-0:1.1 100% | 172.7 MiB/s | 1.7 MiB | 00m00s [ 42/165] Installing libidn2-0:2.3.8-1. 100% | 60.6 MiB/s | 558.7 KiB | 00m00s [ 43/165] Installing dwz-0:0.15-9.fc42. 100% | 19.0 MiB/s | 292.4 KiB | 00m00s [ 44/165] Installing mpfr-0:4.2.2-1.fc4 100% | 202.7 MiB/s | 830.4 KiB | 00m00s [ 45/165] Installing gawk-0:5.3.2-1.fc4 100% | 64.9 MiB/s | 1.8 MiB | 00m00s [ 46/165] Installing unzip-0:6.0-66.fc4 100% | 21.4 MiB/s | 393.8 KiB | 00m00s [ 47/165] Installing file-libs-0:5.46-1 100% | 296.4 MiB/s | 11.9 MiB | 00m00s [ 48/165] Installing file-0:5.46-1.fc42 100% | 7.6 MiB/s | 101.7 KiB | 00m00s [ 49/165] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 50/165] Installing libeconf-0:0.7.6-1 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 51/165] Installing pcre2-0:10.45-1.fc 100% | 227.6 MiB/s | 699.1 KiB | 00m00s [ 52/165] Installing grep-0:3.12-1.fc43 100% | 41.8 MiB/s | 1.0 MiB | 00m00s [ 53/165] Installing xz-1:5.8.1-2.fc41. 100% | 51.4 MiB/s | 1.3 MiB | 00m00s [ 54/165] Installing libcap-ng-0:0.8.5- 100% | 73.1 MiB/s | 74.8 KiB | 00m00s [ 55/165] Installing audit-libs-0:4.0.3 100% | 170.5 MiB/s | 349.3 KiB | 00m00s [ 56/165] Installing pam-libs-0:1.7.0-4 100% | 42.0 MiB/s | 129.1 KiB | 00m00s [ 57/165] Installing libcap-0:2.76-1.fc 100% | 14.0 MiB/s | 214.3 KiB | 00m00s [ 58/165] Installing systemd-libs-0:257 100% | 202.9 MiB/s | 2.2 MiB | 00m00s [ 59/165] Installing alternatives-0:1.3 100% | 5.2 MiB/s | 63.8 KiB | 00m00s [ 60/165] Installing libsepol-0:3.8-1.f 100% | 134.6 MiB/s | 827.0 KiB | 00m00s [ 61/165] Installing libselinux-0:3.8-1 100% | 94.9 MiB/s | 194.3 KiB | 00m00s [ 62/165] Installing findutils-1:4.10.0 100% | 72.1 MiB/s | 1.9 MiB | 00m00s [ 63/165] Installing sed-0:4.9-4.fc42.x 100% | 38.4 MiB/s | 865.5 KiB | 00m00s [ 64/165] Installing libmount-0:2.41-2. 100% | 182.5 MiB/s | 373.8 KiB | 00m00s [ 65/165] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 66/165] Installing json-c-0:0.18-2.fc 100% | 85.9 MiB/s | 88.0 KiB | 00m00s [ 67/165] Installing libffi-0:3.4.8-1.f 100% | 82.4 MiB/s | 84.3 KiB | 00m00s [ 68/165] Installing p11-kit-0:0.25.5-5 100% | 70.5 MiB/s | 2.2 MiB | 00m00s [ 69/165] Installing p11-kit-trust-0:0. 100% | 11.8 MiB/s | 397.2 KiB | 00m00s [ 70/165] Installing lua-libs-0:5.4.7-3 100% | 135.8 MiB/s | 278.1 KiB | 00m00s [ 71/165] Installing zstd-0:1.5.7-1.fc4 100% | 77.7 MiB/s | 1.7 MiB | 00m00s [ 72/165] Installing util-linux-core-0: 100% | 54.5 MiB/s | 1.5 MiB | 00m00s [ 73/165] Installing tar-2:1.35-5.fc42. 100% | 95.5 MiB/s | 3.0 MiB | 00m00s [ 74/165] Installing libsemanage-0:3.8- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 75/165] Installing systemd-standalone 100% | 19.4 MiB/s | 277.8 KiB | 00m00s [ 76/165] Installing libusb1-0:1.0.28-2 100% | 84.3 MiB/s | 172.7 KiB | 00m00s [ 77/165] Installing zip-0:3.0-43.fc42. 100% | 34.3 MiB/s | 702.4 KiB | 00m00s [ 78/165] Installing libpsl-0:0.21.5-5. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 79/165] Installing liblastlog2-0:2.41 100% | 34.9 MiB/s | 35.8 KiB | 00m00s [ 80/165] Installing libassuan-0:2.5.7- 100% | 82.8 MiB/s | 169.6 KiB | 00m00s [ 81/165] Installing libgcrypt-0:1.11.1 100% | 143.2 MiB/s | 1.6 MiB | 00m00s [ 82/165] Installing libksba-0:1.6.7-3. 100% | 79.1 MiB/s | 405.1 KiB | 00m00s [ 83/165] Installing libfdisk-0:2.41-2. 100% | 184.3 MiB/s | 377.5 KiB | 00m00s [ 84/165] Installing nettle-0:3.10.1-1. 100% | 155.0 MiB/s | 793.6 KiB | 00m00s [ 85/165] Installing gnutls-0:3.8.9-5.f 100% | 178.7 MiB/s | 3.6 MiB | 00m00s [ 86/165] Installing libxml2-0:2.12.10- 100% | 80.8 MiB/s | 1.7 MiB | 00m00s [ 87/165] Installing bzip2-0:1.0.8-20.f 100% | 7.2 MiB/s | 103.8 KiB | 00m00s [ 88/165] Installing add-determinism-0: 100% | 94.8 MiB/s | 2.5 MiB | 00m00s [ 89/165] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 90/165] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [ 91/165] Installing ed-0:1.21-2.fc42.x 100% | 11.2 MiB/s | 148.8 KiB | 00m00s [ 92/165] Installing patch-0:2.8-1.fc43 100% | 15.9 MiB/s | 228.3 KiB | 00m00s [ 93/165] Installing elfutils-default-y 100% | 107.5 KiB/s | 2.0 KiB | 00m00s [ 94/165] Installing elfutils-libs-0:0. 100% | 111.5 MiB/s | 685.2 KiB | 00m00s [ 95/165] Installing cpio-0:2.15-2.fc41 100% | 45.8 MiB/s | 1.1 MiB | 00m00s [ 96/165] Installing diffutils-0:3.12-2 100% | 57.8 MiB/s | 1.6 MiB | 00m00s [ 97/165] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 98/165] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [ 99/165] Installing pkgconf-0:2.3.0-2. 100% | 6.3 MiB/s | 91.0 KiB | 00m00s [100/165] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [101/165] Installing libgomp-0:15.1.1-1 100% | 175.8 MiB/s | 539.9 KiB | 00m00s [102/165] Installing npth-0:1.8-2.fc42. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [103/165] Installing libtool-ltdl-0:2.5 100% | 17.4 MiB/s | 71.2 KiB | 00m00s [104/165] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [105/165] Installing cyrus-sasl-lib-0:2 100% | 92.2 MiB/s | 2.3 MiB | 00m00s [106/165] Installing libnghttp2-0:1.65. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [107/165] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [108/165] Installing libbrotli-0:1.1.0- 100% | 117.7 MiB/s | 843.6 KiB | 00m00s [109/165] Installing keyutils-libs-0:1. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [110/165] Installing libcom_err-0:1.47. 100% | 66.6 MiB/s | 68.2 KiB | 00m00s [111/165] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [112/165] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [113/165] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [114/165] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [115/165] Installing package-notes-srpm 100% | 673.2 KiB/s | 2.0 KiB | 00m00s [116/165] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [117/165] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [118/165] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [119/165] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [120/165] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [121/165] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [122/165] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [123/165] Installing qt6-srpm-macros-0: 100% | 722.7 KiB/s | 740.0 B | 00m00s [124/165] Installing coreutils-common-0 100% | 182.1 MiB/s | 11.3 MiB | 00m00s [125/165] Installing openssl-libs-1:3.5 100% | 197.5 MiB/s | 8.9 MiB | 00m00s [126/165] Installing coreutils-0:9.7-1. 100% | 81.3 MiB/s | 5.4 MiB | 00m00s [127/165] Installing ca-certificates-0: 100% | 1.0 MiB/s | 2.4 MiB | 00m02s [128/165] Installing libarchive-0:3.7.7 100% | 182.2 MiB/s | 932.6 KiB | 00m00s [129/165] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s | 2.3 MiB | 00m00s [130/165] Installing tpm2-tss-0:4.1.3-7 100% | 156.8 MiB/s | 1.6 MiB | 00m00s [131/165] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [132/165] Installing libssh-0:0.11.1-4. 100% | 138.6 MiB/s | 567.5 KiB | 00m00s [133/165] Installing gzip-0:1.13-3.fc42 100% | 21.6 MiB/s | 398.4 KiB | 00m00s [134/165] Installing rpm-sequoia-0:1.8. 100% | 208.7 MiB/s | 2.5 MiB | 00m00s [135/165] Installing rpm-libs-0:5.99.90 100% | 129.9 MiB/s | 931.3 KiB | 00m00s [136/165] Installing libfsverity-0:1.6- 100% | 32.7 MiB/s | 33.5 KiB | 00m00s [137/165] Installing libevent-0:2.1.12- 100% | 177.1 MiB/s | 906.9 KiB | 00m00s [138/165] Installing openldap-0:2.6.9-5 100% | 128.7 MiB/s | 658.9 KiB | 00m00s [139/165] Installing gnupg2-0:2.4.7-3.f 100% | 137.9 MiB/s | 9.8 MiB | 00m00s [140/165] Installing libcurl-0:8.14.0~r 100% | 174.2 MiB/s | 892.1 KiB | 00m00s [141/165] Installing elfutils-debuginfo 100% | 5.0 MiB/s | 86.2 KiB | 00m00s [142/165] Installing elfutils-0:0.193-2 100% | 97.4 MiB/s | 2.9 MiB | 00m00s [143/165] Installing binutils-0:2.44-3. 100% | 157.0 MiB/s | 25.9 MiB | 00m00s [144/165] Installing gdb-minimal-0:16.3 100% | 179.0 MiB/s | 13.2 MiB | 00m00s [145/165] Installing debugedit-0:5.1-6. 100% | 12.7 MiB/s | 195.4 KiB | 00m00s [146/165] Installing curl-0:8.14.0~rc1- 100% | 11.1 MiB/s | 476.0 KiB | 00m00s [147/165] Installing rpm-0:5.99.90-5.fc 100% | 38.6 MiB/s | 2.5 MiB | 00m00s [148/165] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [149/165] Installing tree-sitter-srpm-m 100% | 8.4 MiB/s | 8.6 KiB | 00m00s [150/165] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [151/165] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [152/165] Installing rpm-sign-libs-0:5. 100% | 39.6 MiB/s | 40.5 KiB | 00m00s [153/165] Installing rpm-build-libs-0:5 100% | 129.5 MiB/s | 265.2 KiB | 00m00s [154/165] Installing gpgverify-0:2.1-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [155/165] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [156/165] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [157/165] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [158/165] Installing python-srpm-macros 100% | 12.9 MiB/s | 53.0 KiB | 00m00s [159/165] Installing redhat-rpm-config- 100% | 45.9 MiB/s | 188.0 KiB | 00m00s [160/165] Installing rpm-build-0:5.99.9 100% | 15.8 MiB/s | 290.3 KiB | 00m00s [161/165] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [162/165] Installing util-linux-0:2.41- 100% | 42.4 MiB/s | 3.6 MiB | 00m00s [163/165] Installing which-0:2.23-1.fc4 100% | 5.6 MiB/s | 85.6 KiB | 00m00s [164/165] Installing shadow-utils-2:4.1 100% | 71.1 MiB/s | 4.1 MiB | 00m00s [165/165] Installing info-0:7.2-3.fc42. 100% | 122.9 KiB/s | 358.3 KiB | 00m03s Warning: skipped OpenPGP checks for 161 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc43.x86_64 alternatives-1.33-1.fc43.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc43.x86_64 bash-5.2.37-3.fc43.x86_64 binutils-2.44-3.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc43.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.7-1.fc43.x86_64 coreutils-common-9.7-1.fc43.x86_64 cpio-2.15-2.fc41.x86_64 crypto-policies-20250402-2.git86c0178.fc43.noarch curl-8.14.0~rc1-1.fc43.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.1-6.fc43.x86_64 diffutils-3.12-2.fc43.x86_64 dwz-0.15-9.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-3.fc43.noarch elfutils-0.193-2.fc43.x86_64 elfutils-debuginfod-client-0.193-2.fc43.x86_64 elfutils-default-yama-scope-0.193-2.fc43.noarch elfutils-libelf-0.193-2.fc43.x86_64 elfutils-libs-0.193-2.fc43.x86_64 fedora-gpg-keys-43-0.2.noarch fedora-release-43-0.15.noarch fedora-release-common-43-0.15.noarch fedora-release-identity-basic-43-0.15.noarch fedora-repos-43-0.2.noarch fedora-repos-rawhide-43-0.2.noarch file-5.46-1.fc42.x86_64 file-libs-5.46-1.fc42.x86_64 filesystem-3.18-44.fc43.x86_64 filesystem-srpm-macros-3.18-44.fc43.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.2-1.fc43.x86_64 gdb-minimal-16.3-1.fc43.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41.9000-13.fc43.x86_64 glibc-common-2.41.9000-13.fc43.x86_64 glibc-gconv-extra-2.41.9000-13.fc43.x86_64 glibc-minimal-langpack-2.41.9000-13.fc43.x86_64 gmp-6.3.0-3.fc43.x86_64 gnat-srpm-macros-6-7.fc42.noarch gnupg2-2.4.7-3.fc43.x86_64 gnutls-3.8.9-5.fc43.x86_64 go-srpm-macros-3.6.0-7.fc43.noarch gpg-pubkey-e99d6ad1-64d2612c gpgverify-2.1-3.fc43.noarch grep-3.12-1.fc43.x86_64 gzip-1.13-3.fc42.x86_64 ima-evm-utils-libs-1.6.2-5.fc43.x86_64 info-7.2-3.fc42.x86_64 jansson-2.14-2.fc42.x86_64 json-c-0.18-2.fc42.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-5.fc42.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.7.7-4.fc43.x86_64 libassuan-2.5.7-3.fc42.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.41-2.fc43.x86_64 libbrotli-1.1.0-6.fc42.x86_64 libcap-2.76-1.fc43.x86_64 libcap-ng-0.8.5-4.fc42.x86_64 libcom_err-1.47.2-3.fc42.x86_64 libcurl-8.14.0~rc1-1.fc43.x86_64 libeconf-0.7.6-1.fc43.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.41-2.fc43.x86_64 libffi-3.4.8-1.fc43.x86_64 libfsverity-1.6-2.fc42.x86_64 libgcc-15.1.1-1.fc43.x86_64 libgcrypt-1.11.1-1.fc43.x86_64 libgomp-15.1.1-1.fc43.x86_64 libgpg-error-1.55-1.fc43.x86_64 libidn2-2.3.8-1.fc43.x86_64 libksba-1.6.7-3.fc42.x86_64 liblastlog2-2.41-2.fc43.x86_64 libmount-2.41-2.fc43.x86_64 libnghttp2-1.65.0-1.fc43.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.8-1.fc42.x86_64 libsemanage-3.8-1.fc42.x86_64 libsepol-3.8-1.fc42.x86_64 libsmartcols-2.41-2.fc43.x86_64 libssh-0.11.1-4.fc42.x86_64 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.1.1-1.fc43.x86_64 libtasn1-4.20.0-1.fc43.x86_64 libtool-ltdl-2.5.4-4.fc42.x86_64 libunistring-1.1-9.fc42.x86_64 libusb1-1.0.28-2.fc43.x86_64 libuuid-2.41-2.fc43.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-7.fc43.x86_64 libxml2-2.12.10-1.fc43.x86_64 libzstd-1.5.7-1.fc43.x86_64 lua-libs-5.4.7-3.fc43.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.2-1.fc43.x86_64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.x86_64 nettle-3.10.1-1.fc43.x86_64 npth-1.8-2.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-5.fc43.x86_64 openssl-libs-3.5.0-3.fc43.x86_64 p11-kit-0.25.5-5.fc42.x86_64 p11-kit-trust-0.25.5-5.fc42.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.x86_64 patch-2.8-1.fc43.x86_64 pcre2-10.45-1.fc43.x86_64 pcre2-syntax-10.45-1.fc43.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.18.1-1.fc43.noarch python-srpm-macros-3.13-5.fc43.noarch qt5-srpm-macros-5.15.16-1.fc43.noarch qt6-srpm-macros-6.9.0-2.fc43.noarch readline-8.2-13.fc43.x86_64 redhat-rpm-config-343-5.fc43.noarch rpm-5.99.90-5.fc43.x86_64 rpm-build-5.99.90-5.fc43.x86_64 rpm-build-libs-5.99.90-5.fc43.x86_64 rpm-libs-5.99.90-5.fc43.x86_64 rpm-sequoia-1.8.0-1.fc43.x86_64 rpm-sign-libs-5.99.90-5.fc43.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-25.fc43.noarch shadow-utils-4.17.4-1.fc43.x86_64 sqlite-libs-3.49.1-1.fc43.x86_64 systemd-libs-257.5-5.fc43.x86_64 systemd-standalone-sysusers-257.5-5.fc43.x86_64 tar-1.35-5.fc42.x86_64 tpm2-tss-4.1.3-7.fc43.x86_64 tree-sitter-srpm-macros-0.2.4-1.fc43.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.41-2.fc43.x86_64 util-linux-core-2.41-2.fc43.x86_64 which-2.23-1.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.8.1-2.fc41.x86_64 xz-libs-5.8.1-2.fc41.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.4-2.fc43.x86_64 zstd-1.5.7-1.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 sh: line 1: python3-config: command not found sh: line 1: python3-config: command not found Package Qt5Qwt6 was not found in the pkg-config search path. Perhaps you should add the directory containing `Qt5Qwt6.pc' to the PKG_CONFIG_PATH environment variable Package 'Qt5Qwt6' not found setting SOURCE_DATE_EPOCH=1747267200 Wrote: /builddir/build/SRPMS/COPASI-4.45.298-3.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1747326677.647336/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-t6cg98ib/COPASI/COPASI.spec) Config(child) 0 minutes 32 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/COPASI-4.45.298-3.fc43.src.rpm) Config(fedora-41-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1747326677.647336/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.13.1-1.fc41.x86_64 dnf5-plugins-5.2.13.1-1.fc41.x86_64 Finish: chroot init Start: build phase for COPASI-4.45.298-3.fc43.src.rpm Start: build setup for COPASI-4.45.298-3.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 sh: line 1: python3-config: command not found sh: line 1: python3-config: command not found Package Qt5Qwt6 was not found in the pkg-config search path. Perhaps you should add the directory containing `Qt5Qwt6.pc' to the PKG_CONFIG_PATH environment variable Package 'Qt5Qwt6' not found setting SOURCE_DATE_EPOCH=1747267200 Wrote: /builddir/build/SRPMS/COPASI-4.45.298-3.fc43.src.rpm Updating and loading repositories: updates 100% | 1.0 MiB/s | 29.7 KiB | 00m00s fedora 100% | 1.1 MiB/s | 29.8 KiB | 00m00s Copr repository 100% | 46.5 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 64.9 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "pkgconf-pkg-config-2.3.0-2.fc42.x86_64" is already installed. Package Arch Version Repository Size Installing: ImageMagick x86_64 1:7.1.1.47-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.2 KiB bison x86_64 3.8.2-10.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB bzip2-devel x86_64 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB cmake x86_64 3.31.6-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34.2 MiB cppunit-devel x86_64 1.15.1-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211.4 KiB crossguid2-devel x86_64 0.2.2-20.20190529gitca1bf4b.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.4 KiB desktop-file-utils x86_64 0.28-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB expat-devel x86_64 2.7.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.9 KiB f2c x86_64 20210928-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 684.0 KiB flex x86_64 2.6.4-19.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 809.2 KiB flexiblas-devel x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB freeglut-devel x86_64 3.6.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB gcc x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.0 MiB gcc-c++ x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.3 MiB google-cpu_features-devel x86_64 0.9.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.3 KiB libCombine-devel x86_64 0.2.20-9.fc42 copr_base 352.9 KiB libappstream-glib x86_64 0.8.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB libcurl-devel x86_64 8.14.0~rc1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB libmml-qt5-devel x86_64 2.4-22.20210516git7ad58fac.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.5 KiB libnuml-devel x86_64 1.1.4-21.fc42 copr_base 307.8 KiB libnuml-static x86_64 1.1.4-21.fc42 copr_base 647.7 KiB libsbml-devel x86_64 5.20.4-6.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 MiB libsbw-devel x86_64 2.12.2-18.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 436.8 KiB libsedml-devel x86_64 2:2.0.33-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB libxslt-devel x86_64 1.1.43-1.fc43 copr_base 957.2 KiB mesa-libGL-devel x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.8 KiB mesa-libGLU-devel x86_64 9.0.3-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.0 KiB minizip-ng-compat-devel x86_64 4.0.10-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.1 KiB nativejit-devel x86_64 0.1-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 436.2 KiB python3-devel x86_64 3.13.3-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-setuptools noarch 78.1.1-5.fc43 copr_base 8.6 MiB qcustomplot-qt5-devel x86_64 2.1.1-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 303.3 KiB qt5-qtbase-devel x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.1 MiB qt5-qtdatavis3d-devel x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 442.2 KiB qt5-qtwebkit-devel x86_64 5.212.0-0.91alpha4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201.8 KiB qwt-qt5-devel x86_64 6.2.0-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 522.0 KiB qwtplot3d-qt5-devel x86_64 1:0.3.0-10.20210828gitb265574.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 409.7 KiB swig x86_64 4.3.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB zipper-devel x86_64 1.0.3-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70.7 KiB Installing dependencies: ImageMagick-libs x86_64 1:7.1.1.47-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.7 MiB LibRaw x86_64 0.21.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB abattis-cantarell-vf-fonts noarch 0.301-14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB adobe-mappings-cmap noarch 20231115-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582.1 KiB adobe-mappings-pdf noarch 20190401-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB alsa-lib x86_64 1.2.14-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB annobin-docs noarch 12.94-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.9 KiB annobin-plugin-gcc x86_64 12.94-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 993.4 KiB avahi-libs x86_64 0.9~rc2-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 171.6 KiB brotli x86_64 1.1.0-6.fc42 copr_base 31.6 KiB brotli-devel x86_64 1.1.0-6.fc42 copr_base 65.6 KiB cairo x86_64 1.18.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB cairo-gobject x86_64 1.18.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.1 KiB cdparanoia-libs x86_64 10.2-47.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.5 KiB cmake-data noarch 3.31.6-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.5 MiB cmake-filesystem x86_64 3.31.6-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cmake-rpm-macros noarch 3.31.6-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.7 KiB cpp x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.8 MiB cppunit x86_64 1.15.1-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 402.3 KiB crossguid2 x86_64 0.2.2-20.20190529gitca1bf4b.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.4 KiB cups-filesystem noarch 1:2.4.12-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cups-libs x86_64 1:2.4.12-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 618.7 KiB dbus-libs x86_64 1:1.16.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 349.5 KiB default-fonts-core-sans noarch 4.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB double-conversion x86_64 3.3.1-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.6 KiB duktape x86_64 2.7.0-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 615.8 KiB emacs-filesystem noarch 1:30.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B expat x86_64 2.7.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294.2 KiB f2c-libs x86_64 20210928-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.9 KiB fftw-libs-double x86_64 3.3.10-15.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB flexiblas x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.4 KiB flexiblas-netlib x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.0 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.2 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.2 KiB fontconfig x86_64 2.16.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 760.8 KiB fonts-filesystem noarch 1:2.0.5-21.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freeglut x86_64 3.6.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 475.7 KiB freetype x86_64 2.13.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 858.2 KiB fribidi x86_64 1.0.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.3 KiB gcc-plugin-annobin x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.2 KiB gdk-pixbuf2 x86_64 2.42.12-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB gl2ps x86_64 1.4.2-14.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.0 KiB glib2 x86_64 2.84.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.7 MiB glibc-devel x86_64 2.41.9000-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB glx-utils x86_64 9.0.0-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 418.6 KiB google-cpu_features x86_64 0.9.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 96.0 KiB google-droid-sans-fonts noarch 20200215-22.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB google-noto-fonts-common noarch 20250501-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.7 KiB google-noto-sans-vf-fonts noarch 20250501-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB graphene x86_64 1.10.6-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.4 KiB graphite2 x86_64 1.3.14-18.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.8 KiB graphviz-libs x86_64 12.2.1-8.fc43 copr_base 1.2 MiB groff-base x86_64 1.23.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB gstreamer1 x86_64 1.26.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 MiB gstreamer1-plugins-base x86_64 1.26.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.3 MiB harfbuzz x86_64 11.2.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB highway x86_64 1.2.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB hwdata noarch 0.395-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.5 MiB hyphen x86_64 2.8.8-26.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.6 KiB imath x86_64 3.1.12-2.fc42 copr_base 383.7 KiB iso-codes noarch 4.18.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.5 MiB jasper-libs x86_64 4.2.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345.8 KiB jbig2dec-libs x86_64 0.20-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 169.0 KiB jbigkit-libs x86_64 2.1-31.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.4 KiB json-glib x86_64 1.10.6-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 590.7 KiB jsoncpp x86_64 1.9.6-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.6 KiB kernel-headers x86_64 6.15.0-0.rc6.49.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.6 MiB keyutils-libs-devel x86_64 1.6.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.2 KiB krb5-devel x86_64 1.21.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 705.9 KiB lcms2 x86_64 2.16-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 437.7 KiB libCombine x86_64 0.2.20-9.fc42 copr_base 451.5 KiB libICE x86_64 1.1.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.4 KiB libSM x86_64 1.2.5-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.0 KiB libX11 x86_64 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB libX11-common noarch 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB libX11-devel x86_64 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB libX11-xcb x86_64 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.9 KiB libXau x86_64 1.0.12-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.9 KiB libXau-devel x86_64 1.0.12-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 KiB libXext x86_64 1.3.6-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90.0 KiB libXft x86_64 2.3.8-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.4 KiB libXi x86_64 1.8.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.6 KiB libXrender x86_64 0.9.12-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.0 KiB libXt x86_64 1.3.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 429.7 KiB libXv x86_64 1.0.13-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.0 KiB libXxf86vm x86_64 1.1.6-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.2 KiB libb2 x86_64 0.98.1-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46.1 KiB libcom_err-devel x86_64 1.47.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.7 KiB libdatrie x86_64 0.2.13-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.8 KiB libdav1d x86_64 1.5.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libdeflate x86_64 1.24-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.0 KiB libdrm x86_64 2.4.124-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 407.9 KiB libdrm-devel x86_64 2.4.124-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708.5 KiB libedit x86_64 3.1-55.20250104cvs.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 244.1 KiB libevdev x86_64 1.13.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.0 KiB libgfortran x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.3 MiB libglvnd x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 530.2 KiB libglvnd-core-devel x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.3 KiB libglvnd-devel x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB libglvnd-egl x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.7 KiB libglvnd-gles x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.9 KiB libglvnd-glx x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 609.2 KiB libglvnd-opengl x86_64 1:1.7.0-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148.8 KiB libgpg-error-devel x86_64 1.55-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 253.3 KiB libgs x86_64 10.05.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.5 MiB libgudev x86_64 238-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.8 KiB libicu x86_64 76.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.3 MiB libidn2-devel x86_64 2.3.8-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.1 KiB libijs x86_64 0.35-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.5 KiB libinput x86_64 1.28.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 591.3 KiB libjpeg-turbo x86_64 3.1.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 803.2 KiB libjxl x86_64 1:0.11.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB libkadm5 x86_64 1.21.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213.9 KiB liblerc x86_64 4.0.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 636.1 KiB liblqr-1 x86_64 0.4.2-27.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.2 KiB libmml-qt5 x86_64 2.4-22.20210516git7ad58fac.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.8 KiB libmpc x86_64 1.3.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.5 KiB libnghttp2-devel x86_64 1.65.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 286.3 KiB libnuml x86_64 1.1.4-21.fc42 copr_base 281.9 KiB libogg x86_64 2:1.3.5-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45.3 KiB libpaper x86_64 1:2.1.1-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.8 KiB libpciaccess x86_64 0.16-15.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44.5 KiB libpciaccess-devel x86_64 0.16-15.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.3 KiB libpng x86_64 2:1.6.48-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.7 KiB libproxy x86_64 0.5.8-2.fc42 copr_base 102.3 KiB libpsl-devel x86_64 0.21.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110.3 KiB libquadmath x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.9 KiB libraqm x86_64 0.10.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.6 KiB librsvg2 x86_64 2.60.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.0 MiB libsbml x86_64 5.20.4-6.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.6 MiB libsbw x86_64 2.12.2-18.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB libsedml x86_64 2:2.0.33-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB libselinux-devel x86_64 3.8-1.fc42 copr_base 126.8 KiB libsepol-devel x86_64 3.8-1.fc42 copr_base 120.8 KiB libssh-devel x86_64 0.11.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.0 KiB libstdc++-devel x86_64 15.1.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.1 MiB libthai x86_64 0.1.29-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 783.4 KiB libtheora x86_64 1:1.1.1-39.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 481.3 KiB libtiff x86_64 4.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 619.1 KiB libunwind x86_64 1.8.1-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.1 KiB libuuid-devel x86_64 2.41-2.fc43 copr_base 41.0 KiB libuv x86_64 1:1.51.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 570.2 KiB libverto-devel x86_64 0.3.2-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.7 KiB libvisual x86_64 1:0.4.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 451.4 KiB libvorbis x86_64 1:1.3.7-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 833.4 KiB libwacom x86_64 2.15.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.6 KiB libwacom-data noarch 2.15.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB libwayland-client x86_64 1.23.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.1 KiB libwayland-cursor x86_64 1.23.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.3 KiB libwayland-egl x86_64 1.23.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12.4 KiB libwayland-server x86_64 1.23.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.6 KiB libwebp x86_64 1.5.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 947.6 KiB libwmf-lite x86_64 0.2.13-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155.6 KiB libxcb x86_64 1.17.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB libxcb-devel x86_64 1.17.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.7 MiB libxcrypt-devel x86_64 4.4.38-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.8 KiB libxkbcommon x86_64 1.9.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 379.6 KiB libxkbcommon-x11 x86_64 1.9.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.5 KiB libxml2-devel x86_64 2.12.10-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB libxshmfence x86_64 1.3.2-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12.4 KiB libxslt x86_64 1.1.43-1.fc43 copr_base 456.1 KiB libzip x86_64 1.11.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.8 KiB llvm-filesystem x86_64 20.1.3-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B llvm-libs x86_64 20.1.3-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.0 MiB lm_sensors-libs x86_64 3.6.0-22.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85.8 KiB m4 x86_64 1.4.19-12.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 588.7 KiB make x86_64 1:4.4.1-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB mesa-dri-drivers x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45.8 MiB mesa-filesystem x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 KiB mesa-libEGL x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 335.0 KiB mesa-libGL x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 306.2 KiB mesa-libGLU x86_64 9.0.3-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.7 KiB mesa-libgbm x86_64 25.1.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.7 KiB minizip-ng-compat x86_64 4.0.10-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.5 KiB mpdecimal x86_64 4.0.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217.2 KiB mtdev x86_64 1.1.6-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.2 KiB nativejit x86_64 0.1-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167.5 KiB ncurses x86_64 6.5-5.20250125.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 608.1 KiB openblas x86_64 0.3.29-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.7 KiB openblas-openmp x86_64 0.3.29-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.7 MiB openblas-openmp64 x86_64 0.3.29-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.9 MiB openexr-libs x86_64 3.2.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 MiB openjpeg x86_64 2.5.3-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 451.8 KiB openssl-devel x86_64 1:3.5.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.6 MiB opus x86_64 1.5.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.5 KiB orc x86_64 0.4.41-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726.3 KiB pango x86_64 1.56.3-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB pcre2-devel x86_64 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB pcre2-utf16 x86_64 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 626.3 KiB pcre2-utf32 x86_64 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 598.2 KiB perl-AutoLoader noarch 5.74-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.5 KiB perl-B x86_64 1.89-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 498.0 KiB perl-Carp noarch 1.54-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46.6 KiB perl-Class-Struct noarch 0.68-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.4 KiB perl-Data-Dumper x86_64 2.189-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.6 KiB perl-Digest noarch 1.20-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.3 KiB perl-Digest-MD5 x86_64 2.59-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 59.7 KiB perl-DynaLoader x86_64 1.56-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.1 KiB perl-Encode x86_64 4:3.21-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.7 MiB perl-English noarch 1.11-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 KiB perl-Errno x86_64 1.38-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 KiB perl-Exporter noarch 5.78-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 54.3 KiB perl-Fcntl x86_64 1.18-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.9 KiB perl-File-Basename noarch 2.86-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.0 KiB perl-File-Find noarch 1.44-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.9 KiB perl-File-Path noarch 2.18-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 63.5 KiB perl-File-Temp noarch 1:0.231.100-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB perl-File-stat noarch 1.14-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12.5 KiB perl-FileHandle noarch 2.05-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.3 KiB perl-Getopt-Long noarch 1:2.58-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.5 KiB perl-Getopt-Std noarch 1.14-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 KiB perl-HTTP-Tiny noarch 0.090-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.4 KiB perl-IO x86_64 1.55-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 147.0 KiB perl-IO-Socket-IP noarch 0.43-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100.3 KiB perl-IO-Socket-SSL noarch 2.089-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.3 KiB perl-IPC-Open3 noarch 1.22-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.5 KiB perl-MIME-Base32 noarch 1.303-23.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.7 KiB perl-MIME-Base64 x86_64 3.16-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.0 KiB perl-Net-SSLeay x86_64 1.94-9.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB perl-POSIX x86_64 2.20-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.0 KiB perl-PathTools x86_64 3.91-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.0 KiB perl-Pod-Escapes noarch 1:1.07-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.7 KiB perl-Pod-Simple noarch 1:3.46-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 565.0 KiB perl-Pod-Usage noarch 4:2.05-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.69-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB perl-SelectSaver noarch 1.02-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB perl-Socket x86_64 4:2.038-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.9 KiB perl-Storable x86_64 1:3.32-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.3 KiB perl-Symbol noarch 1.09-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.8 KiB perl-Term-ANSIColor noarch 5.01-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.5 KiB perl-Term-Cap noarch 1.18-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.3 KiB perl-Text-ParseWords noarch 3.31-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.6 KiB perl-Time-Local noarch 2:1.350-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.9 KiB perl-URI noarch 5.32-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.2 KiB perl-base noarch 2.27-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12.5 KiB perl-constant noarch 1.33-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.2 KiB perl-if noarch 0.61.000-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.8 KiB perl-interpreter x86_64 4:5.40.2-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB perl-libnet noarch 3.15-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB perl-libs x86_64 4:5.40.2-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.8 MiB perl-locale noarch 1.12-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 KiB perl-mro x86_64 1.29-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41.5 KiB perl-overload noarch 1.37-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.5 KiB perl-overloading noarch 0.02-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB perl-parent noarch 1:0.244-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.3 KiB perl-podlators noarch 1:6.0.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB perl-vars noarch 1.05-517.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 KiB pixman x86_64 0.44.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 674.2 KiB publicsuffix-list noarch 20250116-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.8 KiB pyproject-rpm-macros noarch 1.18.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114.5 KiB python-pip-wheel noarch 25.1.1-3.fc43 copr_base 1.2 MiB python-rpm-macros noarch 3.13-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.1 KiB python3 x86_64 3.13.3-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.7 KiB python3-libs x86_64 3.13.3-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.9 MiB python3-packaging noarch 25.0-1.fc43 copr_base 563.4 KiB python3-rpm-generators noarch 14-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB qcustomplot-qt5 x86_64 2.1.1-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB qt-settings noarch 42.0-4.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB qt5-filesystem x86_64 5.15.16-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B qt5-qtbase x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.0 MiB qt5-qtbase-common noarch 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.0 B qt5-qtbase-gui x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.2 MiB qt5-qtdatavis3d x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB qt5-qtdeclarative x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 MiB qt5-qtdeclarative-devel x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 MiB qt5-qtlocation x86_64 5.15.16-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.9 MiB qt5-qtsensors x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 918.9 KiB qt5-qtsvg x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 627.3 KiB qt5-qtsvg-devel x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.7 KiB qt5-qtwebchannel x86_64 5.15.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 307.1 KiB qt5-qtwebkit x86_64 5.212.0-0.91alpha4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44.0 MiB qt5-rpm-macros noarch 5.15.16-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB qwt-qt5 x86_64 6.2.0-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB qwtplot3d-qt5 x86_64 1:0.3.0-10.20210828gitb265574.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 254.2 KiB rhash x86_64 1.4.5-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351.0 KiB rsvg-pixbuf-loader x86_64 2.60.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345.0 KiB shared-mime-info x86_64 2.3-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.2 MiB spirv-tools-libs x86_64 2025.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.8 MiB tzdata noarch 2025b-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB urw-base35-bookman-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-24.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB vim-filesystem noarch 2:9.1.1291-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 B vulkan-headers noarch 1.4.313.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.9 MiB vulkan-loader x86_64 1.4.313.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 532.4 KiB vulkan-loader-devel x86_64 1.4.313.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 KiB woff2 x86_64 1.0.2-22.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.6 KiB xcb-util x86_64 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.3 KiB xcb-util-image x86_64 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22.2 KiB xcb-util-keysyms x86_64 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.7 KiB xcb-util-renderutil x86_64 0.3.10-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.4 KiB xcb-util-wm x86_64 0.4.2-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.2 KiB xkeyboard-config noarch 2.44-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.6 MiB xml-common noarch 0.6.3-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xz-devel x86_64 1:5.8.1-2.fc41 updates 258.8 KiB zipper x86_64 1.0.3-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 207.5 KiB zlib-ng-compat-devel x86_64 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB Transaction Summary: Installing: 351 packages Total size of inbound packages is 301 MiB. Need to download 301 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). [ 1/351] ImageMagick-1:7.1.1.47-1.fc43 100% | 987.5 KiB/s | 72.1 KiB | 00m00s [ 2/351] bzip2-devel-0:1.0.8-20.fc42.x 100% | 2.6 MiB/s | 213.7 KiB | 00m00s [ 3/351] cppunit-devel-0:1.15.1-24.fc4 100% | 2.0 MiB/s | 57.0 KiB | 00m00s [ 4/351] bison-0:3.8.2-10.fc43.x86_64 100% | 8.5 MiB/s | 981.8 KiB | 00m00s [ 5/351] crossguid2-devel-0:0.2.2-20.2 100% | 529.5 KiB/s | 13.2 KiB | 00m00s [ 6/351] desktop-file-utils-0:0.28-1.f 100% | 2.2 MiB/s | 68.9 KiB | 00m00s [ 7/351] expat-devel-0:2.7.1-1.fc43.x8 100% | 2.6 MiB/s | 53.8 KiB | 00m00s [ 8/351] f2c-0:20210928-10.fc42.x86_64 100% | 12.0 MiB/s | 320.1 KiB | 00m00s [ 9/351] flex-0:2.6.4-19.fc42.x86_64 100% | 3.4 MiB/s | 293.0 KiB | 00m00s [ 10/351] flexiblas-devel-0:3.4.5-1.fc4 100% | 1.6 MiB/s | 113.9 KiB | 00m00s [ 11/351] freeglut-devel-0:3.6.0-4.fc42 100% | 17.0 MiB/s | 886.8 KiB | 00m00s [ 12/351] cmake-0:3.31.6-2.fc43.x86_64 100% | 51.7 MiB/s | 12.1 MiB | 00m00s [ 13/351] google-cpu_features-devel-0:0 100% | 755.9 KiB/s | 16.6 KiB | 00m00s [ 14/351] libCombine-devel-0:0.2.20-9.f 100% | 1.0 MiB/s | 55.4 KiB | 00m00s [ 15/351] libappstream-glib-0:0.8.3-3.f 100% | 18.5 MiB/s | 397.5 KiB | 00m00s [ 16/351] libcurl-devel-0:8.14.0~rc1-1. 100% | 23.4 MiB/s | 815.1 KiB | 00m00s [ 17/351] libmml-qt5-devel-0:2.4-22.202 100% | 546.9 KiB/s | 9.8 KiB | 00m00s [ 18/351] libnuml-devel-0:1.1.4-21.fc42 100% | 3.0 MiB/s | 51.6 KiB | 00m00s [ 19/351] libnuml-static-0:1.1.4-21.fc4 100% | 4.3 MiB/s | 111.3 KiB | 00m00s [ 20/351] libsbml-devel-0:5.20.4-6.fc43 100% | 32.2 MiB/s | 3.6 MiB | 00m00s [ 21/351] libsbw-devel-0:2.12.2-18.fc42 100% | 2.7 MiB/s | 58.1 KiB | 00m00s [ 22/351] libsedml-devel-2:2.0.33-1.fc4 100% | 7.6 MiB/s | 155.8 KiB | 00m00s [ 23/351] libxslt-devel-0:1.1.43-1.fc43 100% | 814.5 KiB/s | 123.0 KiB | 00m00s [ 24/351] mesa-libGL-devel-0:25.1.0-3.f 100% | 1.9 MiB/s | 38.9 KiB | 00m00s [ 25/351] mesa-libGLU-devel-0:9.0.3-6.f 100% | 757.8 KiB/s | 12.1 KiB | 00m00s [ 26/351] minizip-ng-compat-devel-0:4.0 100% | 1.5 MiB/s | 26.6 KiB | 00m00s [ 27/351] nativejit-devel-0:0.1-11.fc42 100% | 3.5 MiB/s | 71.9 KiB | 00m00s [ 28/351] python3-devel-0:3.13.3-3.fc43 100% | 13.0 MiB/s | 359.6 KiB | 00m00s [ 29/351] python3-setuptools-0:78.1.1-5 100% | 31.9 MiB/s | 1.8 MiB | 00m00s [ 30/351] qcustomplot-qt5-devel-0:2.1.1 100% | 2.4 MiB/s | 54.9 KiB | 00m00s [ 31/351] qt5-qtbase-devel-0:5.15.16-2. 100% | 30.9 MiB/s | 3.2 MiB | 00m00s [ 32/351] qt5-qtdatavis3d-devel-0:5.15. 100% | 3.8 MiB/s | 73.7 KiB | 00m00s [ 33/351] gcc-c++-0:15.1.1-1.fc43.x86_6 100% | 17.9 MiB/s | 15.2 MiB | 00m01s [ 34/351] qt5-qtwebkit-devel-0:5.212.0- 100% | 1.6 MiB/s | 55.0 KiB | 00m00s [ 35/351] qwt-qt5-devel-0:6.2.0-9.fc42. 100% | 6.4 MiB/s | 144.9 KiB | 00m00s [ 36/351] qwtplot3d-qt5-devel-1:0.3.0-1 100% | 6.5 MiB/s | 127.4 KiB | 00m00s [ 37/351] zipper-devel-0:1.0.3-10.fc42. 100% | 1.2 MiB/s | 24.1 KiB | 00m00s [ 38/351] swig-0:4.3.1-1.fc43.x86_64 100% | 30.1 MiB/s | 1.6 MiB | 00m00s [ 39/351] cmake-data-0:3.31.6-2.fc43.no 100% | 28.6 MiB/s | 1.9 MiB | 00m00s [ 40/351] cmake-filesystem-0:3.31.6-2.f 100% | 354.5 KiB/s | 17.4 KiB | 00m00s [ 41/351] ImageMagick-libs-1:7.1.1.47-1 100% | 16.0 MiB/s | 2.5 MiB | 00m00s [ 42/351] jsoncpp-0:1.9.6-1.fc43.x86_64 100% | 5.0 MiB/s | 101.6 KiB | 00m00s [ 43/351] crossguid2-0:0.2.2-20.2019052 100% | 402.4 KiB/s | 20.1 KiB | 00m00s [ 44/351] cppunit-0:1.15.1-24.fc42.x86_ 100% | 2.7 MiB/s | 142.1 KiB | 00m00s [ 45/351] expat-0:2.7.1-1.fc43.x86_64 100% | 6.0 MiB/s | 115.9 KiB | 00m00s [ 46/351] f2c-libs-0:20210928-10.fc42.x 100% | 3.3 MiB/s | 64.0 KiB | 00m00s [ 47/351] flexiblas-0:3.4.5-1.fc43.x86_ 100% | 1.5 MiB/s | 26.2 KiB | 00m00s [ 48/351] flexiblas-netlib-0:3.4.5-1.fc 100% | 26.9 MiB/s | 3.4 MiB | 00m00s [ 49/351] freeglut-0:3.6.0-4.fc42.x86_6 100% | 7.3 MiB/s | 150.0 KiB | 00m00s [ 50/351] flexiblas-netlib64-0:3.4.5-1. 100% | 13.2 MiB/s | 3.2 MiB | 00m00s [ 51/351] gcc-0:15.1.1-1.fc43.x86_64 100% | 26.3 MiB/s | 39.4 MiB | 00m02s [ 52/351] google-cpu_features-0:0.9.0-4 100% | 1.8 MiB/s | 37.6 KiB | 00m00s [ 53/351] libmml-qt5-0:2.4-22.20210516g 100% | 4.2 MiB/s | 77.6 KiB | 00m00s [ 54/351] libstdc++-devel-0:15.1.1-1.fc 100% | 11.6 MiB/s | 2.7 MiB | 00m00s [ 55/351] libsbml-0:5.20.4-6.fc43.x86_6 100% | 15.0 MiB/s | 2.4 MiB | 00m00s [ 56/351] libsbw-0:2.12.2-18.fc42.x86_6 100% | 11.2 MiB/s | 391.0 KiB | 00m00s [ 57/351] libsedml-2:2.0.33-1.fc43.x86_ 100% | 12.2 MiB/s | 486.1 KiB | 00m00s [ 58/351] mesa-libGLU-0:9.0.3-6.fc42.x8 100% | 6.0 MiB/s | 167.1 KiB | 00m00s [ 59/351] minizip-ng-compat-0:4.0.10-1. 100% | 3.6 MiB/s | 67.1 KiB | 00m00s [ 60/351] nativejit-0:0.1-11.fc42.x86_6 100% | 3.8 MiB/s | 65.5 KiB | 00m00s [ 61/351] python3-0:3.13.3-3.fc43.x86_6 100% | 1.6 MiB/s | 29.8 KiB | 00m00s [ 62/351] qcustomplot-qt5-0:2.1.1-11.fc 100% | 12.5 MiB/s | 459.4 KiB | 00m00s [ 63/351] cpp-0:15.1.1-1.fc43.x86_64 100% | 23.8 MiB/s | 12.9 MiB | 00m01s [ 64/351] qt5-qtdatavis3d-0:5.15.16-2.f 100% | 15.0 MiB/s | 554.4 KiB | 00m00s [ 65/351] qt5-qtbase-0:5.15.16-2.fc42.x 100% | 20.6 MiB/s | 3.6 MiB | 00m00s [ 66/351] qwt-qt5-0:6.2.0-9.fc42.x86_64 100% | 9.0 MiB/s | 571.3 KiB | 00m00s [ 67/351] qwtplot3d-qt5-1:0.3.0-10.2021 100% | 4.6 MiB/s | 99.7 KiB | 00m00s [ 68/351] zipper-0:1.0.3-10.fc42.x86_64 100% | 4.3 MiB/s | 93.2 KiB | 00m00s [ 69/351] libjxl-1:0.11.1-2.fc42.x86_64 100% | 20.2 MiB/s | 1.1 MiB | 00m00s [ 70/351] flexiblas-openblas-openmp-0:3 100% | 958.5 KiB/s | 17.3 KiB | 00m00s [ 71/351] flexiblas-openblas-openmp64-0 100% | 1.0 MiB/s | 17.3 KiB | 00m00s [ 72/351] mpdecimal-0:4.0.1-1.fc43.x86_ 100% | 4.5 MiB/s | 97.1 KiB | 00m00s [ 73/351] python3-libs-0:3.13.3-3.fc43. 100% | 18.1 MiB/s | 8.9 MiB | 00m00s [ 74/351] qt5-qtbase-common-0:5.15.16-2 100% | 569.1 KiB/s | 12.0 KiB | 00m00s [ 75/351] qt5-qtwebkit-0:5.212.0-0.91al 100% | 28.5 MiB/s | 13.5 MiB | 00m00s [ 76/351] qt5-qtwebchannel-0:5.15.16-2. 100% | 3.8 MiB/s | 102.0 KiB | 00m00s [ 77/351] qt5-qtsvg-0:5.15.16-2.fc42.x8 100% | 9.6 MiB/s | 186.8 KiB | 00m00s [ 78/351] qt5-qtsensors-0:5.15.16-2.fc4 100% | 10.7 MiB/s | 219.9 KiB | 00m00s [ 79/351] qt5-qtlocation-0:5.15.16-3.fc 100% | 24.9 MiB/s | 3.2 MiB | 00m00s [ 80/351] qt5-qtdeclarative-0:5.15.16-2 100% | 13.1 MiB/s | 4.3 MiB | 00m00s [ 81/351] qt5-qtsvg-devel-0:5.15.16-2.f 100% | 1.5 MiB/s | 26.5 KiB | 00m00s [ 82/351] libicu-0:76.1-4.fc42.x86_64 100% | 21.4 MiB/s | 10.7 MiB | 00m01s [ 83/351] libglvnd-opengl-1:1.7.0-7.fc4 100% | 1.6 MiB/s | 37.4 KiB | 00m00s [ 84/351] qt5-qtdeclarative-devel-0:5.1 100% | 12.1 MiB/s | 1.3 MiB | 00m00s [ 85/351] libglvnd-1:1.7.0-7.fc42.x86_6 100% | 5.1 MiB/s | 114.4 KiB | 00m00s [ 86/351] libglvnd-devel-1:1.7.0-7.fc42 100% | 7.7 MiB/s | 157.0 KiB | 00m00s [ 87/351] libglvnd-egl-1:1.7.0-7.fc42.x 100% | 2.0 MiB/s | 36.3 KiB | 00m00s [ 88/351] libglvnd-core-devel-1:1.7.0-7 100% | 914.7 KiB/s | 17.4 KiB | 00m00s [ 89/351] qt5-qtbase-gui-0:5.15.16-2.fc 100% | 30.2 MiB/s | 6.5 MiB | 00m00s [ 90/351] libglvnd-gles-1:1.7.0-7.fc42. 100% | 1.3 MiB/s | 28.6 KiB | 00m00s [ 91/351] libglvnd-glx-1:1.7.0-7.fc42.x 100% | 5.9 MiB/s | 133.1 KiB | 00m00s [ 92/351] gl2ps-0:1.4.2-14.fc43.x86_64 100% | 3.1 MiB/s | 63.4 KiB | 00m00s [ 93/351] gstreamer1-0:1.26.1-1.fc43.x8 100% | 17.8 MiB/s | 1.6 MiB | 00m00s [ 94/351] gstreamer1-plugins-base-0:1.2 100% | 24.7 MiB/s | 2.3 MiB | 00m00s [ 95/351] libX11-0:1.8.11-1.fc42.x86_64 100% | 17.3 MiB/s | 655.3 KiB | 00m00s [ 96/351] libX11-common-0:1.8.11-1.fc42 100% | 7.5 MiB/s | 145.1 KiB | 00m00s [ 97/351] libX11-xcb-0:1.8.11-1.fc42.x8 100% | 530.9 KiB/s | 11.7 KiB | 00m00s [ 98/351] libwebp-0:1.5.0-2.fc42.x86_64 100% | 13.0 MiB/s | 320.6 KiB | 00m00s [ 99/351] libxslt-0:1.1.43-1.fc43.x86_6 100% | 13.7 MiB/s | 182.1 KiB | 00m00s [100/351] glib2-0:2.84.1-1.fc43.x86_64 100% | 15.5 MiB/s | 3.0 MiB | 00m00s [101/351] hyphen-0:2.8.8-26.fc42.x86_64 100% | 1.8 MiB/s | 29.5 KiB | 00m00s [102/351] libjpeg-turbo-0:3.1.0-2.fc42. 100% | 12.1 MiB/s | 236.2 KiB | 00m00s [103/351] libpng-2:1.6.48-1.fc43.x86_64 100% | 5.7 MiB/s | 123.0 KiB | 00m00s [104/351] woff2-0:1.0.2-22.fc42.x86_64 100% | 3.4 MiB/s | 62.4 KiB | 00m00s [105/351] cups-filesystem-1:2.4.12-3.fc 100% | 847.0 KiB/s | 13.6 KiB | 00m00s [106/351] cups-libs-1:2.4.12-3.fc43.x86 100% | 9.1 MiB/s | 262.1 KiB | 00m00s [107/351] libICE-0:1.1.2-2.fc42.x86_64 100% | 4.3 MiB/s | 78.8 KiB | 00m00s [108/351] libSM-0:1.2.5-2.fc42.x86_64 100% | 2.6 MiB/s | 44.4 KiB | 00m00s [109/351] libdrm-0:2.4.124-2.fc42.x86_6 100% | 8.7 MiB/s | 161.0 KiB | 00m00s [110/351] libdrm-devel-0:2.4.124-2.fc42 100% | 8.8 MiB/s | 170.6 KiB | 00m00s [111/351] libinput-0:1.28.1-1.fc43.x86_ 100% | 8.7 MiB/s | 223.1 KiB | 00m00s [112/351] libwacom-0:2.15.0-1.fc43.x86_ 100% | 2.7 MiB/s | 47.7 KiB | 00m00s [113/351] mesa-libgbm-0:25.1.0-3.fc43.x 100% | 1.6 MiB/s | 27.5 KiB | 00m00s [114/351] libwacom-data-0:2.15.0-1.fc43 100% | 7.7 MiB/s | 206.0 KiB | 00m00s [115/351] mesa-libEGL-0:25.1.0-3.fc43.x 100% | 7.6 MiB/s | 140.1 KiB | 00m00s [116/351] libX11-devel-0:1.8.11-1.fc42. 100% | 3.2 MiB/s | 911.0 KiB | 00m00s [117/351] mesa-filesystem-0:25.1.0-3.fc 100% | 1.2 MiB/s | 21.5 KiB | 00m00s [118/351] llvm-filesystem-0:20.1.3-1.fc 100% | 791.0 KiB/s | 14.2 KiB | 00m00s [119/351] mesa-libGL-0:25.1.0-3.fc43.x8 100% | 6.9 MiB/s | 134.5 KiB | 00m00s [120/351] fontconfig-0:2.16.2-1.fc43.x8 100% | 8.7 MiB/s | 258.5 KiB | 00m00s [121/351] freetype-0:2.13.3-2.fc42.x86_ 100% | 10.1 MiB/s | 415.5 KiB | 00m00s [122/351] glx-utils-0:9.0.0-9.fc42.x86_ 100% | 3.7 MiB/s | 71.1 KiB | 00m00s [123/351] harfbuzz-0:11.2.1-1.fc43.x86_ 100% | 14.6 MiB/s | 1.1 MiB | 00m00s [124/351] libxcb-0:1.17.0-5.fc42.x86_64 100% | 7.6 MiB/s | 234.1 KiB | 00m00s [125/351] mesa-dri-drivers-0:25.1.0-3.f 100% | 35.6 MiB/s | 12.2 MiB | 00m00s [126/351] libxkbcommon-0:1.9.0-1.fc43.x 100% | 5.2 MiB/s | 163.5 KiB | 00m00s [127/351] libxkbcommon-x11-0:1.9.0-1.fc 100% | 1.3 MiB/s | 22.4 KiB | 00m00s [128/351] libxcb-devel-0:1.17.0-5.fc42. 100% | 13.4 MiB/s | 1.1 MiB | 00m00s [129/351] xcb-util-image-0:0.4.1-7.fc42 100% | 1.0 MiB/s | 18.8 KiB | 00m00s [130/351] xcb-util-keysyms-0:0.4.1-7.fc 100% | 829.3 KiB/s | 14.1 KiB | 00m00s [131/351] xcb-util-renderutil-0:0.3.10- 100% | 1.0 MiB/s | 17.2 KiB | 00m00s [132/351] xcb-util-wm-0:0.4.2-7.fc42.x8 100% | 1.7 MiB/s | 30.3 KiB | 00m00s [133/351] perl-English-0:1.11-517.fc43. 100% | 691.2 KiB/s | 13.8 KiB | 00m00s [134/351] perl-File-Basename-0:2.86-517 100% | 967.1 KiB/s | 17.4 KiB | 00m00s [135/351] perl-File-Find-0:1.44-517.fc4 100% | 1.5 MiB/s | 25.6 KiB | 00m00s [136/351] perl-IO-0:1.55-517.fc43.x86_6 100% | 4.5 MiB/s | 77.8 KiB | 00m00s [137/351] perl-PathTools-0:3.91-513.fc4 100% | 3.9 MiB/s | 83.2 KiB | 00m00s [138/351] perl-interpreter-4:5.40.2-517 100% | 3.9 MiB/s | 72.4 KiB | 00m00s [139/351] perl-Errno-0:1.38-517.fc43.x8 100% | 893.0 KiB/s | 15.2 KiB | 00m00s [140/351] vulkan-loader-devel-0:1.4.313 100% | 720.0 KiB/s | 12.2 KiB | 00m00s [141/351] vulkan-loader-0:1.4.313.0-1.f 100% | 7.8 MiB/s | 151.5 KiB | 00m00s [142/351] perl-File-Path-0:2.18-512.fc4 100% | 1.7 MiB/s | 35.2 KiB | 00m00s [143/351] perl-Getopt-Long-1:2.58-3.fc4 100% | 3.5 MiB/s | 63.7 KiB | 00m00s [144/351] perl-libs-4:5.40.2-517.fc43.x 100% | 20.0 MiB/s | 2.2 MiB | 00m00s [145/351] qt5-rpm-macros-0:5.15.16-1.fc 100% | 617.1 KiB/s | 10.5 KiB | 00m00s [146/351] double-conversion-0:3.3.1-2.f 100% | 3.0 MiB/s | 51.6 KiB | 00m00s [147/351] dbus-libs-1:1.16.0-3.fc42.x86 100% | 6.3 MiB/s | 149.4 KiB | 00m00s [148/351] pcre2-utf16-0:10.45-1.fc43.x8 100% | 8.7 MiB/s | 241.9 KiB | 00m00s [149/351] qt-settings-0:42.0-4.fc43.noa 100% | 620.5 KiB/s | 10.5 KiB | 00m00s [150/351] qt5-filesystem-0:5.15.16-1.fc 100% | 597.3 KiB/s | 10.2 KiB | 00m00s [151/351] tzdata-0:2025b-1.fc43.noarch 100% | 11.0 MiB/s | 429.4 KiB | 00m00s [152/351] libb2-0:0.98.1-13.fc42.x86_64 100% | 1.3 MiB/s | 25.4 KiB | 00m00s [153/351] python-pip-wheel-0:25.1.1-3.f 100% | 20.1 MiB/s | 1.2 MiB | 00m00s [154/351] perl-DynaLoader-0:1.56-517.fc 100% | 1.5 MiB/s | 26.3 KiB | 00m00s [155/351] perl-Carp-0:1.54-512.fc42.noa 100% | 1.6 MiB/s | 28.9 KiB | 00m00s [156/351] libproxy-0:0.5.8-2.fc42.x86_6 100% | 157.9 KiB/s | 46.0 KiB | 00m00s [157/351] perl-Encode-4:3.21-512.fc42.x 100% | 15.8 MiB/s | 1.0 MiB | 00m00s [158/351] perl-Exporter-0:5.78-512.fc42 100% | 1.3 MiB/s | 31.0 KiB | 00m00s [159/351] perl-Scalar-List-Utils-5:1.69 100% | 3.7 MiB/s | 74.8 KiB | 00m00s [160/351] perl-constant-0:1.33-513.fc42 100% | 1.3 MiB/s | 23.0 KiB | 00m00s [161/351] perl-Fcntl-0:1.18-517.fc43.x8 100% | 1.6 MiB/s | 30.1 KiB | 00m00s [162/351] perl-File-stat-0:1.14-517.fc4 100% | 960.7 KiB/s | 17.3 KiB | 00m00s [163/351] perl-SelectSaver-0:1.02-517.f 100% | 703.5 KiB/s | 12.0 KiB | 00m00s [164/351] perl-Socket-4:2.038-512.fc42. 100% | 3.0 MiB/s | 54.8 KiB | 00m00s [165/351] perl-Symbol-0:1.09-517.fc43.n 100% | 760.0 KiB/s | 14.4 KiB | 00m00s [166/351] llvm-libs-0:20.1.3-1.fc43.x86 100% | 32.6 MiB/s | 33.5 MiB | 00m01s [167/351] perl-base-0:2.27-517.fc43.noa 100% | 342.7 KiB/s | 16.4 KiB | 00m00s [168/351] perl-overload-0:1.37-517.fc43 100% | 953.8 KiB/s | 45.8 KiB | 00m00s [169/351] perl-Class-Struct-0:0.68-517. 100% | 1.3 MiB/s | 22.3 KiB | 00m00s [170/351] perl-Pod-Usage-4:2.05-1.fc43. 100% | 2.2 MiB/s | 40.6 KiB | 00m00s [171/351] perl-Text-ParseWords-0:3.31-5 100% | 915.5 KiB/s | 16.5 KiB | 00m00s [172/351] perl-vars-0:1.05-517.fc43.noa 100% | 778.8 KiB/s | 13.2 KiB | 00m00s [173/351] perl-MIME-Base64-0:3.16-512.f 100% | 1.7 MiB/s | 29.9 KiB | 00m00s [174/351] perl-Getopt-Std-0:1.14-517.fc 100% | 936.5 KiB/s | 15.9 KiB | 00m00s [175/351] perl-Storable-1:3.32-512.fc42 100% | 5.7 MiB/s | 99.6 KiB | 00m00s [176/351] perl-parent-1:0.244-2.fc42.no 100% | 895.6 KiB/s | 15.2 KiB | 00m00s [177/351] zlib-ng-compat-devel-0:2.2.4- 100% | 1.7 MiB/s | 38.3 KiB | 00m00s [178/351] libXext-0:1.3.6-3.fc42.x86_64 100% | 2.3 MiB/s | 39.3 KiB | 00m00s [179/351] libXxf86vm-0:1.1.6-2.fc42.x86 100% | 992.0 KiB/s | 17.9 KiB | 00m00s [180/351] libwayland-client-0:1.23.1-1. 100% | 1.9 MiB/s | 33.0 KiB | 00m00s [181/351] libwayland-cursor-0:1.23.1-1. 100% | 1.1 MiB/s | 18.8 KiB | 00m00s [182/351] libwayland-server-0:1.23.1-1. 100% | 2.4 MiB/s | 41.5 KiB | 00m00s [183/351] libxshmfence-0:1.3.2-6.fc42.x 100% | 781.2 KiB/s | 13.3 KiB | 00m00s [184/351] lm_sensors-libs-0:3.6.0-22.fc 100% | 2.2 MiB/s | 40.4 KiB | 00m00s [185/351] libedit-0:3.1-55.20250104cvs. 100% | 5.7 MiB/s | 105.3 KiB | 00m00s [186/351] libXau-devel-0:1.0.12-2.fc42. 100% | 778.2 KiB/s | 14.0 KiB | 00m00s [187/351] libXau-0:1.0.12-2.fc42.x86_64 100% | 1.9 MiB/s | 33.6 KiB | 00m00s [188/351] xkeyboard-config-0:2.44-1.fc4 100% | 23.1 MiB/s | 923.4 KiB | 00m00s [189/351] libevdev-0:1.13.4-1.fc43.x86_ 100% | 2.2 MiB/s | 37.7 KiB | 00m00s [190/351] libgudev-0:238-7.fc42.x86_64 100% | 2.0 MiB/s | 34.9 KiB | 00m00s [191/351] spirv-tools-libs-0:2025.2-1.f 100% | 19.2 MiB/s | 1.5 MiB | 00m00s [192/351] libnuml-0:1.1.4-21.fc42.x86_6 100% | 6.2 MiB/s | 94.5 KiB | 00m00s [193/351] libxml2-devel-0:2.12.10-1.fc4 100% | 13.1 MiB/s | 494.9 KiB | 00m00s [194/351] highway-0:1.2.0-5.fc42.x86_64 100% | 17.5 MiB/s | 625.6 KiB | 00m00s [195/351] shared-mime-info-0:2.3-7.fc42 100% | 12.4 MiB/s | 393.7 KiB | 00m00s [196/351] mtdev-0:1.1.6-10.fc42.x86_64 100% | 1.2 MiB/s | 21.1 KiB | 00m00s [197/351] libpciaccess-devel-0:0.16-15. 100% | 690.7 KiB/s | 12.4 KiB | 00m00s [198/351] libpciaccess-0:0.16-15.fc42.x 100% | 1.4 MiB/s | 26.3 KiB | 00m00s [199/351] krb5-devel-0:1.21.3-5.fc42.x8 100% | 6.9 MiB/s | 133.4 KiB | 00m00s [200/351] kernel-headers-0:6.15.0-0.rc6 100% | 27.4 MiB/s | 1.5 MiB | 00m00s [201/351] libkadm5-0:1.21.3-5.fc42.x86_ 100% | 3.6 MiB/s | 77.4 KiB | 00m00s [202/351] libidn2-devel-0:2.3.8-1.fc43. 100% | 2.9 MiB/s | 56.6 KiB | 00m00s [203/351] libnghttp2-devel-0:1.65.0-1.f 100% | 3.1 MiB/s | 54.7 KiB | 00m00s [204/351] brotli-devel-0:1.1.0-6.fc42.x 100% | 2.0 MiB/s | 34.4 KiB | 00m00s [205/351] libpsl-devel-0:0.21.5-5.fc42. 100% | 1.8 MiB/s | 33.2 KiB | 00m00s [206/351] libssh-devel-0:0.11.1-4.fc42. 100% | 2.3 MiB/s | 41.8 KiB | 00m00s [207/351] json-glib-0:1.10.6-2.fc42.x86 100% | 8.3 MiB/s | 160.5 KiB | 00m00s [208/351] gdk-pixbuf2-0:2.42.12-10.fc42 100% | 15.9 MiB/s | 471.5 KiB | 00m00s [209/351] xorg-x11-proto-devel-0:2024.1 100% | 9.3 MiB/s | 265.8 KiB | 00m00s [210/351] openssl-devel-1:3.5.0-3.fc43. 100% | 31.6 MiB/s | 2.9 MiB | 00m00s [211/351] keyutils-libs-devel-0:1.6.3-5 100% | 2.9 MiB/s | 54.1 KiB | 00m00s [212/351] libcom_err-devel-0:1.47.2-3.f 100% | 984.5 KiB/s | 16.7 KiB | 00m00s [213/351] libselinux-devel-0:3.8-1.fc42 100% | 9.5 MiB/s | 116.7 KiB | 00m00s [214/351] pcre2-utf32-0:10.45-1.fc43.x8 100% | 11.2 MiB/s | 228.8 KiB | 00m00s [215/351] libverto-devel-0:0.3.2-10.fc4 100% | 799.9 KiB/s | 14.4 KiB | 00m00s [216/351] pcre2-devel-0:10.45-1.fc43.x8 100% | 14.7 MiB/s | 510.7 KiB | 00m00s [217/351] graphite2-0:1.3.14-18.fc42.x8 100% | 4.9 MiB/s | 95.8 KiB | 00m00s [218/351] alsa-lib-0:1.2.14-2.fc43.x86_ 100% | 18.1 MiB/s | 518.4 KiB | 00m00s [219/351] cairo-0:1.18.2-3.fc42.x86_64 100% | 21.0 MiB/s | 731.8 KiB | 00m00s [220/351] libXv-0:1.0.13-2.fc42.x86_64 100% | 980.1 KiB/s | 18.6 KiB | 00m00s [221/351] opus-0:1.5.2-2.fc42.x86_64 100% | 12.2 MiB/s | 236.9 KiB | 00m00s [222/351] cdparanoia-libs-0:10.2-47.fc4 100% | 2.6 MiB/s | 54.0 KiB | 00m00s [223/351] graphene-0:1.10.6-10.fc42.x86 100% | 3.5 MiB/s | 61.3 KiB | 00m00s [224/351] pango-0:1.56.3-1.fc43.x86_64 100% | 12.2 MiB/s | 349.7 KiB | 00m00s [225/351] libXi-0:1.8.2-2.fc42.x86_64 100% | 2.3 MiB/s | 40.5 KiB | 00m00s [226/351] libogg-2:1.3.5-11.fc42.x86_64 100% | 1.7 MiB/s | 33.1 KiB | 00m00s [227/351] libtheora-1:1.1.1-39.fc42.x86 100% | 8.8 MiB/s | 170.4 KiB | 00m00s [228/351] libvisual-1:0.4.1-5.fc41.x86_ 100% | 7.0 MiB/s | 151.3 KiB | 00m00s [229/351] libvorbis-1:1.3.7-12.fc42.x86 100% | 9.2 MiB/s | 189.2 KiB | 00m00s [230/351] libwayland-egl-0:1.23.1-1.fc4 100% | 723.9 KiB/s | 12.3 KiB | 00m00s [231/351] orc-0:0.4.41-1.fc43.x86_64 100% | 9.8 MiB/s | 221.6 KiB | 00m00s [232/351] libunwind-0:1.8.1-2.fc43.x86_ 100% | 3.4 MiB/s | 77.2 KiB | 00m00s [233/351] libmpc-0:1.3.1-7.fc42.x86_64 100% | 3.5 MiB/s | 70.9 KiB | 00m00s [234/351] glibc-devel-0:2.41.9000-13.fc 100% | 16.4 MiB/s | 471.6 KiB | 00m00s [235/351] default-fonts-core-sans-0:4.2 100% | 1.4 MiB/s | 25.2 KiB | 00m00s [236/351] make-1:4.4.1-10.fc42.x86_64 100% | 17.7 MiB/s | 579.9 KiB | 00m00s [237/351] fonts-filesystem-1:2.0.5-21.f 100% | 506.6 KiB/s | 8.6 KiB | 00m00s [238/351] iso-codes-0:4.18.0-1.fc43.noa 100% | 22.4 MiB/s | 3.6 MiB | 00m00s [239/351] xml-common-0:0.6.3-66.fc42.no 100% | 1.6 MiB/s | 31.2 KiB | 00m00s [240/351] openblas-0:0.3.29-1.fc42.x86_ 100% | 2.3 MiB/s | 42.3 KiB | 00m00s [241/351] libgfortran-0:15.1.1-1.fc43.x 100% | 21.7 MiB/s | 953.4 KiB | 00m00s [242/351] libquadmath-0:15.1.1-1.fc43.x 100% | 9.6 MiB/s | 197.0 KiB | 00m00s [243/351] m4-0:1.4.19-12.fc43.x86_64 100% | 10.5 MiB/s | 299.9 KiB | 00m00s [244/351] emacs-filesystem-1:30.0-4.fc4 100% | 272.4 KiB/s | 7.4 KiB | 00m00s [245/351] openblas-openmp-0:0.3.29-1.fc 100% | 33.0 MiB/s | 5.4 MiB | 00m00s [246/351] abattis-cantarell-vf-fonts-0: 100% | 4.9 MiB/s | 120.3 KiB | 00m00s [247/351] google-noto-fonts-common-0:20 100% | 825.9 KiB/s | 17.3 KiB | 00m00s [248/351] google-noto-sans-vf-fonts-0:2 100% | 17.7 MiB/s | 614.5 KiB | 00m00s [249/351] avahi-libs-0:0.9~rc2-3.fc43.x 100% | 3.7 MiB/s | 68.9 KiB | 00m00s [250/351] libuuid-devel-0:2.41-2.fc43.x 100% | 2.1 MiB/s | 31.6 KiB | 00m00s [251/351] vim-filesystem-2:9.1.1291-1.f 100% | 828.0 KiB/s | 15.7 KiB | 00m00s [252/351] openblas-openmp64-0:0.3.29-1. 100% | 21.7 MiB/s | 5.2 MiB | 00m00s [253/351] libuv-1:1.51.0-1.fc43.x86_64 100% | 13.0 MiB/s | 266.4 KiB | 00m00s [254/351] rhash-0:1.4.5-2.fc42.x86_64 100% | 10.2 MiB/s | 198.7 KiB | 00m00s [255/351] libXrender-0:0.9.12-2.fc42.x8 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [256/351] pixman-0:0.44.2-2.fc42.x86_64 100% | 13.5 MiB/s | 277.4 KiB | 00m00s [257/351] libXt-0:1.3.1-2.fc42.x86_64 100% | 9.3 MiB/s | 181.3 KiB | 00m00s [258/351] LibRaw-0:0.21.4-1.fc43.x86_64 100% | 13.5 MiB/s | 413.4 KiB | 00m00s [259/351] cairo-gobject-0:1.18.2-3.fc42 100% | 666.2 KiB/s | 17.3 KiB | 00m00s [260/351] rsvg-pixbuf-loader-0:2.60.0-1 100% | 7.1 MiB/s | 167.8 KiB | 00m00s [261/351] libzip-0:1.11.3-1.fc42.x86_64 100% | 1.8 MiB/s | 70.3 KiB | 00m00s [262/351] librsvg2-0:2.60.0-1.fc43.x86_ 100% | 17.2 MiB/s | 1.9 MiB | 00m00s [263/351] libgs-0:10.05.0-1.fc43.x86_64 100% | 27.2 MiB/s | 3.4 MiB | 00m00s [264/351] openjpeg-0:2.5.3-6.fc42.x86_6 100% | 8.2 MiB/s | 192.8 KiB | 00m00s [265/351] fftw-libs-double-0:3.3.10-15. 100% | 27.3 MiB/s | 1.1 MiB | 00m00s [266/351] imath-0:3.1.12-2.fc42.x86_64 100% | 2.2 MiB/s | 102.3 KiB | 00m00s [267/351] jbigkit-libs-0:2.1-31.fc42.x8 100% | 2.9 MiB/s | 53.3 KiB | 00m00s [268/351] lcms2-0:2.16-5.fc42.x86_64 100% | 7.8 MiB/s | 184.1 KiB | 00m00s [269/351] liblqr-1-0:0.4.2-27.fc43.x86_ 100% | 2.5 MiB/s | 49.3 KiB | 00m00s [270/351] libraqm-0:0.10.1-2.fc42.x86_6 100% | 1.2 MiB/s | 22.5 KiB | 00m00s [271/351] libtiff-0:4.7.0-3.fc42.x86_64 100% | 10.8 MiB/s | 220.4 KiB | 00m00s [272/351] libwmf-lite-0:0.2.13-7.fc42.x 100% | 3.8 MiB/s | 73.3 KiB | 00m00s [273/351] libgpg-error-devel-0:1.55-1.f 100% | 3.6 MiB/s | 73.0 KiB | 00m00s [274/351] openexr-libs-0:3.2.4-3.fc41.x 100% | 26.1 MiB/s | 1.1 MiB | 00m00s [275/351] libsepol-devel-0:3.8-1.fc42.x 100% | 2.9 MiB/s | 40.9 KiB | 00m00s [276/351] duktape-0:2.7.0-9.fc42.x86_64 100% | 8.7 MiB/s | 169.6 KiB | 00m00s [277/351] libCombine-0:0.2.20-9.fc42.x8 100% | 10.6 MiB/s | 152.5 KiB | 00m00s [278/351] brotli-0:1.1.0-6.fc42.x86_64 100% | 2.0 MiB/s | 20.4 KiB | 00m00s [279/351] xcb-util-0:0.4.1-7.fc42.x86_6 100% | 1.0 MiB/s | 18.0 KiB | 00m00s [280/351] perl-mro-0:1.29-517.fc43.x86_ 100% | 1.6 MiB/s | 30.1 KiB | 00m00s [281/351] vulkan-headers-0:1.4.313.0-1. 100% | 28.6 MiB/s | 1.4 MiB | 00m00s [282/351] perl-overloading-0:0.02-517.f 100% | 547.3 KiB/s | 13.1 KiB | 00m00s [283/351] perl-Pod-Perldoc-0:3.28.01-51 100% | 4.1 MiB/s | 80.2 KiB | 00m00s [284/351] perl-podlators-1:6.0.2-3.fc42 100% | 6.8 MiB/s | 124.6 KiB | 00m00s [285/351] perl-HTTP-Tiny-0:0.090-2.fc42 100% | 2.9 MiB/s | 56.5 KiB | 00m00s [286/351] perl-IPC-Open3-0:1.22-517.fc4 100% | 1.2 MiB/s | 22.1 KiB | 00m00s [287/351] graphviz-libs-0:12.2.1-8.fc43 100% | 1.7 MiB/s | 472.4 KiB | 00m00s [288/351] perl-File-Temp-1:0.231.100-51 100% | 3.0 MiB/s | 59.2 KiB | 00m00s [289/351] perl-Pod-Simple-1:3.46-1.fc43 100% | 8.6 MiB/s | 210.5 KiB | 00m00s [290/351] perl-POSIX-0:2.20-517.fc43.x8 100% | 3.2 MiB/s | 97.8 KiB | 00m00s [291/351] groff-base-0:1.23.0-8.fc42.x8 100% | 16.8 MiB/s | 1.1 MiB | 00m00s [292/351] perl-IO-Socket-SSL-0:2.089-2. 100% | 9.4 MiB/s | 230.2 KiB | 00m00s [293/351] perl-Time-Local-2:1.350-512.f 100% | 1.9 MiB/s | 34.5 KiB | 00m00s [294/351] perl-Net-SSLeay-0:1.94-9.fc43 100% | 12.5 MiB/s | 357.5 KiB | 00m00s [295/351] fribidi-0:1.0.16-2.fc42.x86_6 100% | 2.9 MiB/s | 53.6 KiB | 00m00s [296/351] libXft-0:2.3.8-8.fc42.x86_64 100% | 3.7 MiB/s | 72.9 KiB | 00m00s [297/351] libthai-0:0.1.29-10.fc42.x86_ 100% | 10.3 MiB/s | 211.5 KiB | 00m00s [298/351] libdeflate-0:1.24-1.fc43.x86_ 100% | 3.0 MiB/s | 69.8 KiB | 00m00s [299/351] liblerc-0:4.0.0-8.fc42.x86_64 100% | 11.1 MiB/s | 216.7 KiB | 00m00s [300/351] libdatrie-0:0.2.13-11.fc42.x8 100% | 1.8 MiB/s | 32.4 KiB | 00m00s [301/351] publicsuffix-list-0:20250116- 100% | 4.6 MiB/s | 89.0 KiB | 00m00s [302/351] libdav1d-0:1.5.1-1.fc42.x86_6 100% | 15.3 MiB/s | 640.9 KiB | 00m00s [303/351] hwdata-0:0.395-1.fc43.noarch 100% | 28.3 MiB/s | 1.6 MiB | 00m00s [304/351] adobe-mappings-cmap-deprecate 100% | 5.7 MiB/s | 110.5 KiB | 00m00s [305/351] adobe-mappings-cmap-0:2023111 100% | 22.9 MiB/s | 2.2 MiB | 00m00s [306/351] adobe-mappings-pdf-0:20190401 100% | 15.9 MiB/s | 616.8 KiB | 00m00s [307/351] jbig2dec-libs-0:0.20-6.fc42.x 100% | 4.0 MiB/s | 74.4 KiB | 00m00s [308/351] xz-devel-1:5.8.1-2.fc41.x86_6 100% | 365.9 KiB/s | 67.0 KiB | 00m00s [309/351] libijs-0:0.35-24.fc42.x86_64 100% | 1.6 MiB/s | 29.4 KiB | 00m00s [310/351] libpaper-1:2.1.1-8.fc42.x86_6 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [311/351] urw-base35-fonts-0:20200910-2 100% | 629.6 KiB/s | 10.1 KiB | 00m00s [312/351] urw-base35-fonts-common-0:202 100% | 1.2 MiB/s | 20.8 KiB | 00m00s [313/351] urw-base35-z003-fonts-0:20200 100% | 12.2 MiB/s | 275.5 KiB | 00m00s [314/351] urw-base35-standard-symbols-p 100% | 2.6 MiB/s | 58.3 KiB | 00m00s [315/351] google-droid-sans-fonts-0:202 100% | 25.5 MiB/s | 2.7 MiB | 00m00s [316/351] urw-base35-p052-fonts-0:20200 100% | 23.2 MiB/s | 973.2 KiB | 00m00s [317/351] urw-base35-nimbus-sans-fonts- 100% | 23.2 MiB/s | 1.3 MiB | 00m00s [318/351] urw-base35-nimbus-roman-fonts 100% | 17.4 MiB/s | 856.1 KiB | 00m00s [319/351] urw-base35-nimbus-mono-ps-fon 100% | 22.2 MiB/s | 794.7 KiB | 00m00s [320/351] urw-base35-gothic-fonts-0:202 100% | 19.0 MiB/s | 642.5 KiB | 00m00s [321/351] urw-base35-d050000l-fonts-0:2 100% | 3.9 MiB/s | 75.8 KiB | 00m00s [322/351] urw-base35-c059-fonts-0:20200 100% | 23.1 MiB/s | 874.0 KiB | 00m00s [323/351] libxcrypt-devel-0:4.4.38-7.fc 100% | 1.5 MiB/s | 29.4 KiB | 00m00s [324/351] perl-Term-ANSIColor-0:5.01-51 100% | 2.7 MiB/s | 47.7 KiB | 00m00s [325/351] jasper-libs-0:4.2.3-3.fc42.x8 100% | 8.5 MiB/s | 164.8 KiB | 00m00s [326/351] urw-base35-bookman-fonts-0:20 100% | 17.2 MiB/s | 846.9 KiB | 00m00s [327/351] perl-Term-Cap-0:1.18-512.fc42 100% | 1.0 MiB/s | 22.2 KiB | 00m00s [328/351] perl-if-0:0.61.000-517.fc43.n 100% | 790.7 KiB/s | 14.2 KiB | 00m00s [329/351] ncurses-0:6.5-5.20250125.fc42 100% | 16.4 MiB/s | 419.8 KiB | 00m00s [330/351] perl-Pod-Escapes-1:1.07-512.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [331/351] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.3 MiB/s | 21.8 KiB | 00m00s [332/351] perl-locale-0:1.12-517.fc43.n 100% | 814.9 KiB/s | 13.9 KiB | 00m00s [333/351] perl-IO-Socket-IP-0:0.43-2.fc 100% | 2.4 MiB/s | 42.4 KiB | 00m00s [334/351] perl-AutoLoader-0:5.74-517.fc 100% | 1.1 MiB/s | 21.5 KiB | 00m00s [335/351] perl-URI-0:5.32-1.fc43.noarch 100% | 7.4 MiB/s | 129.5 KiB | 00m00s [336/351] perl-Data-Dumper-0:2.189-513. 100% | 3.3 MiB/s | 56.7 KiB | 00m00s [337/351] perl-MIME-Base32-0:1.303-23.f 100% | 1.1 MiB/s | 20.5 KiB | 00m00s [338/351] perl-libnet-0:3.15-513.fc42.n 100% | 6.7 MiB/s | 122.9 KiB | 00m00s [339/351] perl-FileHandle-0:2.05-517.fc 100% | 925.3 KiB/s | 15.7 KiB | 00m00s [340/351] perl-B-0:1.89-517.fc43.x86_64 100% | 9.1 MiB/s | 177.0 KiB | 00m00s [341/351] perl-Digest-MD5-0:2.59-6.fc42 100% | 2.1 MiB/s | 36.0 KiB | 00m00s [342/351] perl-Digest-0:1.20-512.fc42.n 100% | 1.4 MiB/s | 24.9 KiB | 00m00s [343/351] pyproject-rpm-macros-0:1.18.1 100% | 2.4 MiB/s | 44.9 KiB | 00m00s [344/351] gcc-plugin-annobin-0:15.1.1-1 100% | 1.6 MiB/s | 50.7 KiB | 00m00s [345/351] python-rpm-macros-0:3.13-5.fc 100% | 762.3 KiB/s | 16.8 KiB | 00m00s [346/351] python3-rpm-macros-0:3.13-5.f 100% | 678.9 KiB/s | 11.5 KiB | 00m00s [347/351] cmake-rpm-macros-0:3.31.6-2.f 100% | 981.1 KiB/s | 16.7 KiB | 00m00s [348/351] python3-rpm-generators-0:14-1 100% | 1.7 MiB/s | 29.2 KiB | 00m00s [349/351] annobin-docs-0:12.94-1.fc43.n 100% | 4.9 MiB/s | 90.7 KiB | 00m00s [350/351] python3-packaging-0:25.0-1.fc 100% | 11.0 MiB/s | 146.1 KiB | 00m00s [351/351] annobin-plugin-gcc-0:12.94-1. 100% | 24.6 MiB/s | 982.1 KiB | 00m00s -------------------------------------------------------------------------------- [351/351] Total 100% | 47.0 MiB/s | 300.9 MiB | 00m06s Running transaction [ 1/353] Verify package files 100% | 346.0 B/s | 351.0 B | 00m01s [ 2/353] Prepare transaction 100% | 1.0 KiB/s | 351.0 B | 00m00s [ 3/353] Installing glib2-0:2.84.1-1.f 100% | 13.6 MiB/s | 14.7 MiB | 00m01s [ 4/353] Installing cmake-filesystem-0 100% | 2.5 MiB/s | 7.6 KiB | 00m00s [ 5/353] Installing libpng-2:1.6.48-1. 100% | 25.9 MiB/s | 239.0 KiB | 00m00s [ 6/353] Installing libjpeg-turbo-0:3. 100% | 262.0 MiB/s | 804.9 KiB | 00m00s [ 7/353] Installing expat-0:2.7.1-1.fc 100% | 19.3 MiB/s | 296.3 KiB | 00m00s [ 8/353] Installing libX11-xcb-0:1.8.1 100% | 11.5 MiB/s | 11.8 KiB | 00m00s [ 9/353] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 10/353] Installing urw-base35-fonts-c 100% | 5.4 MiB/s | 38.4 KiB | 00m00s [ 11/353] Installing libglvnd-1:1.7.0-7 100% | 173.0 MiB/s | 531.6 KiB | 00m00s [ 12/353] Installing libglvnd-opengl-1: 100% | 146.1 MiB/s | 149.6 KiB | 00m00s [ 13/353] Installing libgfortran-0:15.1 100% | 15.4 MiB/s | 3.3 MiB | 00m00s [ 14/353] Installing libICE-0:1.1.2-2.f 100% | 195.1 MiB/s | 199.8 KiB | 00m00s [ 15/353] Installing libSM-0:1.2.5-2.fc 100% | 103.9 MiB/s | 106.4 KiB | 00m00s [ 16/353] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.5 KiB | 00m00s [ 17/353] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 18/353] Installing lcms2-0:2.16-5.fc4 100% | 42.9 MiB/s | 439.3 KiB | 00m00s [ 19/353] Installing libmpc-0:1.3.1-7.f 100% | 162.2 MiB/s | 166.1 KiB | 00m00s [ 20/353] Installing libogg-2:1.3.5-11. 100% | 45.8 MiB/s | 46.9 KiB | 00m00s [ 21/353] Installing libwayland-client- 100% | 61.8 MiB/s | 63.3 KiB | 00m00s [ 22/353] Installing libwebp-0:1.5.0-2. 100% | 92.9 MiB/s | 951.8 KiB | 00m00s [ 23/353] Installing libicu-0:76.1-4.fc 100% | 169.8 MiB/s | 36.3 MiB | 00m00s [ 24/353] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 25/353] Installing mesa-libGLU-0:9.0. 100% | 59.0 MiB/s | 362.6 KiB | 00m00s [ 26/353] Installing libgudev-0:238-7.f 100% | 43.6 MiB/s | 89.3 KiB | 00m00s [ 27/353] Installing shared-mime-info-0 100% | 56.0 MiB/s | 2.6 MiB | 00m00s [ 28/353] Installing gdk-pixbuf2-0:2.42 100% | 53.7 MiB/s | 2.5 MiB | 00m00s [ 29/353] Installing adobe-mappings-cma 100% | 147.5 MiB/s | 15.2 MiB | 00m00s [ 30/353] Installing fribidi-0:1.0.16-2 100% | 12.8 MiB/s | 196.8 KiB | 00m00s [ 31/353] Installing jbigkit-libs-0:2.1 100% | 60.3 MiB/s | 123.4 KiB | 00m00s [ 32/353] Installing imath-0:3.1.12-2.f 100% | 53.8 MiB/s | 385.9 KiB | 00m00s [ 33/353] Installing openjpeg-0:2.5.3-6 100% | 147.7 MiB/s | 453.8 KiB | 00m00s [ 34/353] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 35/353] Installing m4-0:1.4.19-12.fc4 100% | 25.3 MiB/s | 595.1 KiB | 00m00s [ 36/353] Installing libquadmath-0:15.1 100% | 155.8 MiB/s | 319.2 KiB | 00m00s [ 37/353] Installing openblas-0:0.3.29- 100% | 7.9 MiB/s | 113.5 KiB | 00m00s [ 38/353] Installing xml-common-0:0.6.3 100% | 26.4 MiB/s | 81.1 KiB | 00m00s [ 39/353] Installing make-1:4.4.1-10.fc 100% | 58.1 MiB/s | 1.8 MiB | 00m00s [ 40/353] Installing xorg-x11-proto-dev 100% | 55.7 MiB/s | 1.8 MiB | 00m00s [ 41/353] Installing kernel-headers-0:6 100% | 78.2 MiB/s | 6.7 MiB | 00m00s [ 42/353] Installing libxcrypt-devel-0: 100% | 16.2 MiB/s | 33.1 KiB | 00m00s [ 43/353] Installing glibc-devel-0:2.41 100% | 60.0 MiB/s | 2.3 MiB | 00m00s [ 44/353] Installing libevdev-0:1.13.4- 100% | 81.2 MiB/s | 83.1 KiB | 00m00s [ 45/353] Installing libXau-0:1.0.12-2. 100% | 19.2 MiB/s | 78.5 KiB | 00m00s [ 46/353] Installing libxcb-0:1.17.0-5. 100% | 108.0 MiB/s | 1.1 MiB | 00m00s [ 47/353] Installing libwayland-server- 100% | 13.0 MiB/s | 79.8 KiB | 00m00s [ 48/353] Installing pcre2-utf16-0:10.4 100% | 204.2 MiB/s | 627.2 KiB | 00m00s [ 49/353] Installing dbus-libs-1:1.16.0 100% | 171.2 MiB/s | 350.6 KiB | 00m00s [ 50/353] Installing libxslt-0:1.1.43-1 100% | 21.4 MiB/s | 459.2 KiB | 00m00s [ 51/353] Installing zipper-0:1.0.3-10. 100% | 102.1 MiB/s | 209.1 KiB | 00m00s [ 52/353] Installing minizip-ng-compat- 100% | 79.7 MiB/s | 163.3 KiB | 00m00s [ 53/353] Installing libsbml-0:5.20.4-6 100% | 147.7 MiB/s | 9.6 MiB | 00m00s [ 54/353] Installing libnuml-0:1.1.4-21 100% | 92.2 MiB/s | 283.3 KiB | 00m00s [ 55/353] Installing libsedml-2:2.0.33- 100% | 193.4 MiB/s | 2.1 MiB | 00m00s [ 56/353] Installing libCombine-0:0.2.2 100% | 55.3 MiB/s | 453.0 KiB | 00m00s [ 57/353] Installing avahi-libs-0:0.9~r 100% | 56.7 MiB/s | 174.2 KiB | 00m00s [ 58/353] Installing xcb-util-keysyms-0 100% | 17.4 MiB/s | 17.8 KiB | 00m00s [ 59/353] Installing xcb-util-renderuti 100% | 12.6 MiB/s | 25.8 KiB | 00m00s [ 60/353] Installing xcb-util-wm-0:0.4. 100% | 40.6 MiB/s | 83.2 KiB | 00m00s [ 61/353] Installing xcb-util-0:0.4.1-7 100% | 27.0 MiB/s | 27.7 KiB | 00m00s [ 62/353] Installing xcb-util-image-0:0 100% | 4.6 MiB/s | 23.6 KiB | 00m00s [ 63/353] Installing libXau-devel-0:1.0 100% | 1.8 MiB/s | 9.4 KiB | 00m00s [ 64/353] Installing libxcb-devel-0:1.1 100% | 16.7 MiB/s | 3.1 MiB | 00m00s [ 65/353] Installing iso-codes-0:4.18.0 100% | 100.1 MiB/s | 21.6 MiB | 00m00s [ 66/353] Installing openblas-openmp64- 100% | 148.2 MiB/s | 43.9 MiB | 00m00s [ 67/353] Installing openblas-openmp-0: 100% | 37.0 MiB/s | 43.7 MiB | 00m01s [ 68/353] Installing flexiblas-netlib-0 100% | 16.0 MiB/s | 10.9 MiB | 00m01s [ 69/353] Installing flexiblas-0:3.4.5- 100% | 50.4 MiB/s | 51.6 KiB | 00m00s [ 70/353] Installing flexiblas-openblas 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 71/353] Installing flexiblas-netlib64 100% | 22.0 MiB/s | 11.0 MiB | 00m01s [ 72/353] Installing flexiblas-openblas 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 73/353] Installing adobe-mappings-cma 100% | 190.5 MiB/s | 585.2 KiB | 00m00s [ 74/353] Installing pyproject-rpm-macr 100% | 882.2 KiB/s | 116.4 KiB | 00m00s [ 75/353] Installing libwayland-cursor- 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [ 76/353] Installing libtheora-1:1.1.1- 100% | 157.5 MiB/s | 483.7 KiB | 00m00s [ 77/353] Installing libvorbis-1:1.3.7- 100% | 31.4 MiB/s | 835.9 KiB | 00m00s [ 78/353] Installing cpp-0:15.1.1-1.fc4 100% | 14.0 MiB/s | 37.8 MiB | 00m03s [ 79/353] Installing gcc-0:15.1.1-1.fc4 100% | 33.4 MiB/s | 111.1 MiB | 00m03s [ 80/353] Installing gl2ps-0:1.4.2-14.f 100% | 30.4 MiB/s | 124.6 KiB | 00m00s [ 81/353] Installing urw-base35-z003-fo 100% | 821.4 KiB/s | 391.8 KiB | 00m00s [ 82/353] Installing urw-base35-standar 100% | 3.4 MiB/s | 66.0 KiB | 00m00s [ 83/353] Installing urw-base35-p052-fo 100% | 38.1 MiB/s | 1.5 MiB | 00m00s [ 84/353] Installing urw-base35-nimbus- 100% | 72.6 MiB/s | 2.4 MiB | 00m00s [ 85/353] Installing urw-base35-nimbus- 100% | 24.0 MiB/s | 1.4 MiB | 00m00s [ 86/353] Installing urw-base35-nimbus- 100% | 36.3 MiB/s | 1.1 MiB | 00m00s [ 87/353] Installing urw-base35-gothic- 100% | 37.5 MiB/s | 1.2 MiB | 00m00s [ 88/353] Installing urw-base35-d050000 100% | 3.5 MiB/s | 85.4 KiB | 00m00s [ 89/353] Installing urw-base35-c059-fo 100% | 36.7 MiB/s | 1.4 MiB | 00m00s [ 90/353] Installing urw-base35-bookman 100% | 47.1 MiB/s | 1.4 MiB | 00m00s [ 91/353] Installing urw-base35-fonts-0 100% | 5.5 MiB/s | 5.6 KiB | 00m00s [ 92/353] Installing abattis-cantarell- 100% | 63.3 MiB/s | 194.4 KiB | 00m00s [ 93/353] Installing google-droid-sans- 100% | 133.2 MiB/s | 6.3 MiB | 00m00s [ 94/353] Installing graphviz-libs-0:12 100% | 44.7 MiB/s | 1.2 MiB | 00m00s [ 95/353] Installing jasper-libs-0:4.2. 100% | 13.0 MiB/s | 347.3 KiB | 00m00s [ 96/353] Installing LibRaw-0:0.21.4-1. 100% | 130.2 MiB/s | 2.3 MiB | 00m00s [ 97/353] Installing libssh-devel-0:0.1 100% | 58.8 MiB/s | 180.5 KiB | 00m00s [ 98/353] Installing json-glib-0:1.10.6 100% | 31.0 MiB/s | 602.5 KiB | 00m00s [ 99/353] Installing graphene-0:1.10.6- 100% | 53.4 MiB/s | 164.1 KiB | 00m00s [100/353] Installing liblqr-1-0:0.4.2-2 100% | 50.1 MiB/s | 102.6 KiB | 00m00s [101/353] Installing annobin-docs-0:12. 100% | 48.8 MiB/s | 100.0 KiB | 00m00s [102/353] Installing ncurses-0:6.5-5.20 100% | 20.0 MiB/s | 614.7 KiB | 00m00s [103/353] Installing libpaper-1:2.1.1-8 100% | 12.3 MiB/s | 50.4 KiB | 00m00s [104/353] Installing libijs-0:0.35-24.f 100% | 32.5 MiB/s | 66.5 KiB | 00m00s [105/353] Installing jbig2dec-libs-0:0. 100% | 55.5 MiB/s | 170.5 KiB | 00m00s [106/353] Installing adobe-mappings-pdf 100% | 122.1 MiB/s | 4.4 MiB | 00m00s [107/353] Installing hwdata-0:0.395-1.f 100% | 163.5 MiB/s | 9.5 MiB | 00m00s [108/353] Installing libpciaccess-0:0.1 100% | 22.4 MiB/s | 45.9 KiB | 00m00s [109/353] Installing libdrm-0:2.4.124-2 100% | 44.7 MiB/s | 411.8 KiB | 00m00s [110/353] Installing libpciaccess-devel 100% | 7.8 MiB/s | 15.9 KiB | 00m00s [111/353] Installing libdrm-devel-0:2.4 100% | 77.9 MiB/s | 717.5 KiB | 00m00s [112/353] Installing publicsuffix-list- 100% | 161.5 MiB/s | 330.8 KiB | 00m00s [113/353] Installing libpsl-devel-0:0.2 100% | 15.8 MiB/s | 113.6 KiB | 00m00s [114/353] Installing libdav1d-0:1.5.1-1 100% | 121.0 MiB/s | 1.7 MiB | 00m00s [115/353] Installing libdatrie-0:0.2.13 100% | 28.8 MiB/s | 58.9 KiB | 00m00s [116/353] Installing libthai-0:0.1.29-1 100% | 95.8 MiB/s | 785.2 KiB | 00m00s [117/353] Installing liblerc-0:4.0.0-8. 100% | 69.2 MiB/s | 637.6 KiB | 00m00s [118/353] Installing libtiff-0:4.7.0-3. 100% | 86.7 MiB/s | 621.3 KiB | 00m00s [119/353] Installing xz-devel-1:5.8.1-2 100% | 42.7 MiB/s | 262.6 KiB | 00m00s [120/353] Installing libxml2-devel-0:2. 100% | 56.0 MiB/s | 3.4 MiB | 00m00s [121/353] Installing libsbml-devel-0:5. 100% | 145.9 MiB/s | 35.7 MiB | 00m00s [122/353] Installing libdeflate-0:1.24- 100% | 60.7 MiB/s | 124.4 KiB | 00m00s [123/353] Installing openexr-libs-0:3.2 100% | 29.5 MiB/s | 6.5 MiB | 00m00s [124/353] Installing groff-base-0:1.23. 100% | 47.5 MiB/s | 3.9 MiB | 00m00s [125/353] Installing perl-Digest-0:1.20 100% | 18.1 MiB/s | 37.1 KiB | 00m00s [126/353] Installing perl-B-0:1.89-517. 100% | 122.4 MiB/s | 501.3 KiB | 00m00s [127/353] Installing perl-FileHandle-0: 100% | 154.9 KiB/s | 9.8 KiB | 00m00s [128/353] Installing perl-Digest-MD5-0: 100% | 20.0 MiB/s | 61.6 KiB | 00m00s [129/353] Installing perl-MIME-Base32-0 100% | 31.4 MiB/s | 32.2 KiB | 00m00s [130/353] Installing perl-Data-Dumper-0 100% | 38.2 MiB/s | 117.5 KiB | 00m00s [131/353] Installing perl-libnet-0:3.15 100% | 36.0 MiB/s | 294.7 KiB | 00m00s [132/353] Installing perl-AutoLoader-0: 100% | 20.5 MiB/s | 20.9 KiB | 00m00s [133/353] Installing perl-IO-Socket-IP- 100% | 830.6 KiB/s | 102.2 KiB | 00m00s [134/353] Installing perl-URI-0:5.32-1. 100% | 33.5 MiB/s | 274.1 KiB | 00m00s [135/353] Installing perl-File-Path-0:2 100% | 63.0 MiB/s | 64.5 KiB | 00m00s [136/353] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [137/353] Installing perl-if-0:0.61.000 100% | 6.1 MiB/s | 6.2 KiB | 00m00s [138/353] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [139/353] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [140/353] Installing perl-locale-0:1.12 100% | 6.7 MiB/s | 6.9 KiB | 00m00s [141/353] Installing perl-Net-SSLeay-0: 100% | 43.8 MiB/s | 1.4 MiB | 00m00s [142/353] Installing perl-IO-Socket-SSL 100% | 138.2 MiB/s | 707.4 KiB | 00m00s [143/353] Installing perl-Class-Struct- 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [144/353] Installing perl-Term-ANSIColo 100% | 48.4 MiB/s | 99.2 KiB | 00m00s [145/353] Installing perl-Term-Cap-0:1. 100% | 29.9 MiB/s | 30.6 KiB | 00m00s [146/353] Installing perl-IPC-Open3-0:1 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [147/353] Installing perl-File-Temp-1:0 100% | 32.0 MiB/s | 164.1 KiB | 00m00s [148/353] Installing perl-POSIX-0:2.20- 100% | 75.6 MiB/s | 232.3 KiB | 00m00s [149/353] Installing perl-Pod-Simple-1: 100% | 56.1 MiB/s | 574.6 KiB | 00m00s [150/353] Installing perl-HTTP-Tiny-0:0 100% | 38.2 MiB/s | 156.4 KiB | 00m00s [151/353] Installing perl-SelectSaver-0 100% | 2.5 MiB/s | 2.6 KiB | 00m00s [152/353] Installing perl-Symbol-0:1.09 100% | 7.0 MiB/s | 7.2 KiB | 00m00s [153/353] Installing perl-Socket-4:2.03 100% | 39.7 MiB/s | 122.0 KiB | 00m00s [154/353] Installing perl-File-stat-0:1 100% | 12.7 MiB/s | 13.1 KiB | 00m00s [155/353] Installing perl-podlators-1:6 100% | 18.5 MiB/s | 321.4 KiB | 00m00s [156/353] Installing perl-Pod-Perldoc-0 100% | 10.3 MiB/s | 169.2 KiB | 00m00s [157/353] Installing perl-Fcntl-0:1.18- 100% | 3.5 MiB/s | 50.0 KiB | 00m00s [158/353] Installing perl-base-0:2.27-5 100% | 12.6 MiB/s | 12.9 KiB | 00m00s [159/353] Installing perl-Text-ParseWor 100% | 14.2 MiB/s | 14.6 KiB | 00m00s [160/353] Installing perl-mro-0:1.29-51 100% | 41.6 MiB/s | 42.6 KiB | 00m00s [161/353] Installing perl-IO-0:1.55-517 100% | 49.2 MiB/s | 151.3 KiB | 00m00s [162/353] Installing perl-overloading-0 100% | 5.4 MiB/s | 5.5 KiB | 00m00s [163/353] Installing perl-Pod-Usage-4:2 100% | 6.1 MiB/s | 87.9 KiB | 00m00s [164/353] Installing perl-Errno-0:1.38- 100% | 8.5 MiB/s | 8.7 KiB | 00m00s [165/353] Installing perl-Scalar-List-U 100% | 16.1 MiB/s | 148.5 KiB | 00m00s [166/353] Installing perl-constant-0:1. 100% | 26.7 MiB/s | 27.4 KiB | 00m00s [167/353] Installing perl-vars-0:1.05-5 100% | 4.2 MiB/s | 4.3 KiB | 00m00s [168/353] Installing perl-Getopt-Std-0: 100% | 11.5 MiB/s | 11.7 KiB | 00m00s [169/353] Installing perl-MIME-Base64-0 100% | 21.6 MiB/s | 44.3 KiB | 00m00s [170/353] Installing perl-parent-1:0.24 100% | 10.7 MiB/s | 11.0 KiB | 00m00s [171/353] Installing perl-Storable-1:3. 100% | 57.1 MiB/s | 233.9 KiB | 00m00s [172/353] Installing perl-overload-0:1. 100% | 70.3 MiB/s | 71.9 KiB | 00m00s [173/353] Installing perl-Getopt-Long-1 100% | 20.5 MiB/s | 147.2 KiB | 00m00s [174/353] Installing perl-File-Basename 100% | 14.2 MiB/s | 14.6 KiB | 00m00s [175/353] Installing perl-Carp-0:1.54-5 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [176/353] Installing perl-Exporter-0:5. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [177/353] Installing perl-PathTools-0:3 100% | 6.2 MiB/s | 184.5 KiB | 00m00s [178/353] Installing perl-DynaLoader-0: 100% | 31.7 MiB/s | 32.5 KiB | 00m00s [179/353] Installing perl-Encode-4:3.21 100% | 47.4 MiB/s | 4.7 MiB | 00m00s [180/353] Installing perl-libs-4:5.40.2 100% | 68.2 MiB/s | 9.9 MiB | 00m00s [181/353] Installing perl-interpreter-4 100% | 7.8 MiB/s | 119.9 KiB | 00m00s [182/353] Installing perl-English-0:1.1 100% | 6.5 MiB/s | 6.6 KiB | 00m00s [183/353] Installing perl-File-Find-0:1 100% | 41.5 MiB/s | 42.5 KiB | 00m00s [184/353] Installing brotli-0:1.1.0-6.f 100% | 2.3 MiB/s | 32.3 KiB | 00m00s [185/353] Installing brotli-devel-0:1.1 100% | 33.2 MiB/s | 68.0 KiB | 00m00s [186/353] Installing duktape-0:2.7.0-9. 100% | 46.4 MiB/s | 617.8 KiB | 00m00s [187/353] Installing libproxy-0:0.5.8-2 100% | 51.0 MiB/s | 104.5 KiB | 00m00s [188/353] Installing libsepol-devel-0:3 100% | 31.3 MiB/s | 128.3 KiB | 00m00s [189/353] Installing libgpg-error-devel 100% | 16.6 MiB/s | 255.5 KiB | 00m00s [190/353] Installing libwmf-lite-0:0.2. 100% | 76.7 MiB/s | 157.1 KiB | 00m00s [191/353] Installing fftw-libs-double-0 100% | 92.5 MiB/s | 3.4 MiB | 00m00s [192/353] Installing libzip-0:1.11.3-1. 100% | 133.7 MiB/s | 137.0 KiB | 00m00s [193/353] Installing pixman-0:0.44.2-2. 100% | 164.9 MiB/s | 675.3 KiB | 00m00s [194/353] Installing rhash-0:1.4.5-2.fc 100% | 20.5 MiB/s | 356.4 KiB | 00m00s [195/353] Installing libuv-1:1.51.0-1.f 100% | 40.0 MiB/s | 573.0 KiB | 00m00s [196/353] Installing vim-filesystem-2:9 100% | 2.3 MiB/s | 4.7 KiB | 00m00s [197/353] Installing libuuid-devel-0:2. 100% | 42.9 MiB/s | 44.0 KiB | 00m00s [198/353] Installing google-noto-fonts- 100% | 18.1 MiB/s | 18.5 KiB | 00m00s [199/353] Installing google-noto-sans-v 100% | 173.9 MiB/s | 1.4 MiB | 00m00s [200/353] Installing default-fonts-core 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [201/353] Installing libunwind-0:1.8.1- 100% | 10.7 MiB/s | 197.4 KiB | 00m00s [202/353] Installing orc-0:0.4.41-1.fc4 100% | 37.5 MiB/s | 728.9 KiB | 00m00s [203/353] Installing libwayland-egl-0:1 100% | 13.2 MiB/s | 13.6 KiB | 00m00s [204/353] Installing libvisual-1:0.4.1- 100% | 110.8 MiB/s | 453.8 KiB | 00m00s [205/353] Installing cdparanoia-libs-0: 100% | 58.1 MiB/s | 118.9 KiB | 00m00s [206/353] Installing opus-0:1.5.2-2.fc4 100% | 139.5 MiB/s | 428.6 KiB | 00m00s [207/353] Installing alsa-lib-0:1.2.14- 100% | 43.8 MiB/s | 1.4 MiB | 00m00s [208/353] Installing graphite2-0:1.3.14 100% | 12.1 MiB/s | 197.9 KiB | 00m00s [209/353] Installing freetype-0:2.13.3- 100% | 27.1 MiB/s | 859.9 KiB | 00m00s [210/353] Installing harfbuzz-0:11.2.1- 100% | 155.3 MiB/s | 2.8 MiB | 00m00s [211/353] Installing fontconfig-0:2.16. 100% | 635.7 KiB/s | 780.1 KiB | 00m01s [212/353] Installing libraqm-0:0.10.1-2 100% | 29.0 MiB/s | 29.7 KiB | 00m00s [213/353] Installing libverto-devel-0:0 100% | 25.7 MiB/s | 26.4 KiB | 00m00s [214/353] Installing pcre2-utf32-0:10.4 100% | 146.3 MiB/s | 599.1 KiB | 00m00s [215/353] Installing pcre2-devel-0:10.4 100% | 59.8 MiB/s | 2.1 MiB | 00m00s [216/353] Installing libselinux-devel-0 100% | 11.3 MiB/s | 161.6 KiB | 00m00s [217/353] Installing libcom_err-devel-0 100% | 1.2 MiB/s | 18.3 KiB | 00m00s [218/353] Installing keyutils-libs-deve 100% | 5.4 MiB/s | 55.2 KiB | 00m00s [219/353] Installing openssl-devel-1:3. 100% | 20.6 MiB/s | 5.6 MiB | 00m00s [220/353] Installing libnghttp2-devel-0 100% | 140.4 MiB/s | 287.5 KiB | 00m00s [221/353] Installing libidn2-devel-0:2. 100% | 30.6 MiB/s | 156.7 KiB | 00m00s [222/353] Installing libkadm5-0:1.21.3- 100% | 70.3 MiB/s | 215.9 KiB | 00m00s [223/353] Installing krb5-devel-0:1.21. 100% | 21.8 MiB/s | 715.2 KiB | 00m00s [224/353] Installing mtdev-0:1.1.6-10.f 100% | 14.9 MiB/s | 30.4 KiB | 00m00s [225/353] Installing highway-0:1.2.0-5. 100% | 145.1 MiB/s | 4.4 MiB | 00m00s [226/353] Installing libjxl-1:0.11.1-2. 100% | 145.0 MiB/s | 3.0 MiB | 00m00s [227/353] Installing xkeyboard-config-0 100% | 56.1 MiB/s | 6.7 MiB | 00m00s [228/353] Installing libxkbcommon-0:1.9 100% | 124.1 MiB/s | 381.3 KiB | 00m00s [229/353] Installing libxkbcommon-x11-0 100% | 35.5 MiB/s | 36.4 KiB | 00m00s [230/353] Installing libedit-0:3.1-55.2 100% | 60.0 MiB/s | 245.8 KiB | 00m00s [231/353] Installing lm_sensors-libs-0: 100% | 28.3 MiB/s | 86.9 KiB | 00m00s [232/353] Installing spirv-tools-libs-0 100% | 80.3 MiB/s | 5.8 MiB | 00m00s [233/353] Installing libxshmfence-0:1.3 100% | 6.6 MiB/s | 13.6 KiB | 00m00s [234/353] Installing python-pip-wheel-0 100% | 113.2 MiB/s | 1.2 MiB | 00m00s [235/353] Installing libb2-0:0.98.1-13. 100% | 9.2 MiB/s | 47.2 KiB | 00m00s [236/353] Installing tzdata-0:2025b-1.f 100% | 17.0 MiB/s | 1.9 MiB | 00m00s [237/353] Installing qt5-filesystem-0:5 100% | 3.4 MiB/s | 3.5 KiB | 00m00s [238/353] Installing qt-settings-0:42.0 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [239/353] Installing double-conversion- 100% | 48.5 MiB/s | 99.4 KiB | 00m00s [240/353] Installing qt5-qtbase-common- 100% | 21.7 KiB/s | 356.0 B | 00m00s [241/353] Installing qt5-qtbase-0:5.15. 100% | 67.0 MiB/s | 10.0 MiB | 00m00s [242/353] Installing vulkan-loader-0:1. 100% | 104.5 MiB/s | 535.0 KiB | 00m00s [243/353] Installing llvm-filesystem-0: 100% | 1.0 MiB/s | 1.1 KiB | 00m00s [244/353] Installing llvm-libs-0:20.1.3 100% | 97.0 MiB/s | 137.1 MiB | 00m01s [245/353] Installing mesa-filesystem-0: 100% | 4.2 MiB/s | 4.3 KiB | 00m00s [246/353] Installing mesa-libgbm-0:25.1 100% | 10.0 MiB/s | 20.5 KiB | 00m00s [247/353] Installing mesa-dri-drivers-0 100% | 60.9 MiB/s | 45.8 MiB | 00m01s [248/353] Installing libglvnd-egl-1:1.7 100% | 34.3 MiB/s | 70.3 KiB | 00m00s [249/353] Installing mesa-libEGL-0:25.1 100% | 82.0 MiB/s | 335.9 KiB | 00m00s [250/353] Installing libglvnd-gles-1:1. 100% | 34.9 MiB/s | 107.3 KiB | 00m00s [251/353] Installing libwacom-data-0:2. 100% | 31.4 MiB/s | 1.5 MiB | 00m00s [252/353] Installing cups-filesystem-1: 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [253/353] Installing cups-libs-1:2.4.12 100% | 101.0 MiB/s | 620.3 KiB | 00m00s [254/353] Installing woff2-0:1.0.2-22.f 100% | 41.5 MiB/s | 127.5 KiB | 00m00s [255/353] Installing hyphen-0:2.8.8-26. 100% | 28.1 MiB/s | 57.5 KiB | 00m00s [256/353] Installing libX11-common-0:1. 100% | 47.5 MiB/s | 1.2 MiB | 00m00s [257/353] Installing libX11-0:1.8.11-1. 100% | 128.6 MiB/s | 1.3 MiB | 00m00s [258/353] Installing libXext-0:1.3.6-3. 100% | 44.5 MiB/s | 91.2 KiB | 00m00s [259/353] Installing libXrender-0:0.9.1 100% | 50.1 MiB/s | 51.3 KiB | 00m00s [260/353] Installing cairo-0:1.18.2-3.f 100% | 99.1 MiB/s | 1.8 MiB | 00m00s [261/353] Installing libXi-0:1.8.2-2.fc 100% | 83.7 MiB/s | 85.7 KiB | 00m00s [262/353] Installing libXt-0:1.3.1-2.fc 100% | 105.2 MiB/s | 430.9 KiB | 00m00s [263/353] Installing libgs-0:10.05.0-1. 100% | 115.6 MiB/s | 23.6 MiB | 00m00s [264/353] Installing cairo-gobject-0:1. 100% | 17.6 MiB/s | 36.0 KiB | 00m00s [265/353] Installing libXft-0:2.3.8-8.f 100% | 41.5 MiB/s | 169.9 KiB | 00m00s [266/353] Installing pango-0:1.56.3-1.f 100% | 11.8 MiB/s | 1.0 MiB | 00m00s [267/353] Installing librsvg2-0:2.60.0- 100% | 50.7 MiB/s | 5.0 MiB | 00m00s [268/353] Installing rsvg-pixbuf-loader 100% | 56.3 MiB/s | 346.0 KiB | 00m00s [269/353] Installing ImageMagick-libs-1 100% | 17.4 MiB/s | 8.8 MiB | 00m01s [270/353] Installing libXxf86vm-0:1.1.6 100% | 9.9 MiB/s | 30.5 KiB | 00m00s [271/353] Installing libglvnd-glx-1:1.7 100% | 99.4 MiB/s | 610.6 KiB | 00m00s [272/353] Installing mesa-libGL-0:25.1. 100% | 27.3 MiB/s | 307.2 KiB | 00m00s [273/353] Installing freeglut-0:3.6.0-4 100% | 77.7 MiB/s | 477.4 KiB | 00m00s [274/353] Installing glx-utils-0:9.0.0- 100% | 19.5 MiB/s | 419.7 KiB | 00m00s [275/353] Installing libXv-0:1.0.13-2.f 100% | 7.6 MiB/s | 31.2 KiB | 00m00s [276/353] Installing libX11-devel-0:1.8 100% | 6.1 MiB/s | 1.1 MiB | 00m00s [277/353] Installing libglvnd-core-deve 100% | 20.1 MiB/s | 41.1 KiB | 00m00s [278/353] Installing libglvnd-devel-1:1 100% | 73.1 MiB/s | 2.1 MiB | 00m00s [279/353] Installing mesa-libGL-devel-0 100% | 79.6 MiB/s | 81.5 KiB | 00m00s [280/353] Installing mesa-libGLU-devel- 100% | 17.1 MiB/s | 17.5 KiB | 00m00s [281/353] Installing mpdecimal-0:4.0.1- 100% | 35.6 MiB/s | 218.8 KiB | 00m00s [282/353] Installing python3-libs-0:3.1 100% | 99.0 MiB/s | 40.3 MiB | 00m00s [283/353] Installing python3-0:3.13.3-3 100% | 2.0 MiB/s | 30.4 KiB | 00m00s [284/353] Installing gstreamer1-0:1.26. 100% | 93.3 MiB/s | 5.3 MiB | 00m00s [285/353] Installing cmake-rpm-macros-0 100% | 8.1 MiB/s | 8.3 KiB | 00m00s [286/353] Installing gstreamer1-plugins 100% | 105.7 MiB/s | 7.3 MiB | 00m00s [287/353] Installing libwacom-0:2.15.0- 100% | 6.3 MiB/s | 103.7 KiB | 00m00s [288/353] Installing libinput-0:1.28.1- 100% | 14.4 MiB/s | 604.3 KiB | 00m00s [289/353] Installing qt5-qtbase-gui-0:5 100% | 34.9 MiB/s | 20.2 MiB | 00m01s [290/353] Installing qt5-qtdeclarative- 100% | 125.6 MiB/s | 14.4 MiB | 00m00s [291/353] Installing qt5-qtsvg-0:5.15.1 100% | 68.5 MiB/s | 630.9 KiB | 00m00s [292/353] Installing qwt-qt5-0:6.2.0-9. 100% | 192.2 MiB/s | 1.7 MiB | 00m00s [293/353] Installing qt5-qtdatavis3d-0: 100% | 135.8 MiB/s | 1.9 MiB | 00m00s [294/353] Installing qt5-qtwebchannel-0 100% | 43.2 MiB/s | 310.0 KiB | 00m00s [295/353] Installing qt5-qtsensors-0:5. 100% | 100.5 MiB/s | 926.0 KiB | 00m00s [296/353] Installing qt5-qtlocation-0:5 100% | 116.9 MiB/s | 10.9 MiB | 00m00s [297/353] Installing qt5-qtwebkit-0:5.2 100% | 116.4 MiB/s | 44.0 MiB | 00m00s [298/353] Installing qcustomplot-qt5-0: 100% | 139.1 MiB/s | 1.4 MiB | 00m00s [299/353] Installing qwtplot3d-qt5-1:0. 100% | 62.4 MiB/s | 255.8 KiB | 00m00s [300/353] Installing vulkan-headers-0:1 100% | 65.1 MiB/s | 30.9 MiB | 00m00s [301/353] Installing vulkan-loader-deve 100% | 8.9 MiB/s | 9.1 KiB | 00m00s [302/353] Installing python3-packaging- 100% | 56.2 MiB/s | 575.9 KiB | 00m00s [303/353] Installing python3-rpm-genera 100% | 40.5 MiB/s | 82.9 KiB | 00m00s [304/353] Installing nativejit-0:0.1-11 100% | 41.3 MiB/s | 169.2 KiB | 00m00s [305/353] Installing libsbw-0:2.12.2-18 100% | 44.1 MiB/s | 1.2 MiB | 00m00s [306/353] Installing google-cpu_feature 100% | 5.6 MiB/s | 98.0 KiB | 00m00s [307/353] Installing libstdc++-devel-0: 100% | 90.1 MiB/s | 16.2 MiB | 00m00s [308/353] Installing gcc-c++-0:15.1.1-1 100% | 121.4 MiB/s | 41.3 MiB | 00m00s [309/353] Installing f2c-libs-0:2021092 100% | 42.4 MiB/s | 130.3 KiB | 00m00s [310/353] Installing crossguid2-0:0.2.2 100% | 10.7 MiB/s | 32.8 KiB | 00m00s [311/353] Installing cppunit-0:1.15.1-2 100% | 15.8 MiB/s | 405.0 KiB | 00m00s [312/353] Installing jsoncpp-0:1.9.6-1. 100% | 23.4 MiB/s | 263.1 KiB | 00m00s [313/353] Installing cmake-data-0:3.31. 100% | 29.9 MiB/s | 9.1 MiB | 00m00s [314/353] Installing cmake-0:3.31.6-2.f 100% | 51.4 MiB/s | 34.2 MiB | 00m01s [315/353] Installing qt5-rpm-macros-0:5 100% | 119.7 KiB/s | 2.4 KiB | 00m00s [316/353] Installing qt5-qtbase-devel-0 100% | 59.7 MiB/s | 19.5 MiB | 00m00s [317/353] Installing qt5-qtdeclarative- 100% | 28.7 MiB/s | 9.0 MiB | 00m00s [318/353] Installing libmml-qt5-0:2.4-2 100% | 114.3 MiB/s | 234.1 KiB | 00m00s [319/353] Installing qt5-qtsvg-devel-0: 100% | 28.9 MiB/s | 88.8 KiB | 00m00s [320/353] Installing qwt-qt5-devel-0:6. 100% | 21.2 MiB/s | 565.6 KiB | 00m00s [321/353] Installing libmml-qt5-devel-0 100% | 5.0 MiB/s | 5.2 KiB | 00m00s [322/353] Installing qt5-qtdatavis3d-de 100% | 41.9 MiB/s | 472.3 KiB | 00m00s [323/353] Installing qt5-qtwebkit-devel 100% | 30.6 MiB/s | 219.2 KiB | 00m00s [324/353] Installing crossguid2-devel-0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [325/353] Installing nativejit-devel-0: 100% | 54.2 MiB/s | 444.3 KiB | 00m00s [326/353] Installing cppunit-devel-0:1. 100% | 36.4 MiB/s | 223.6 KiB | 00m00s [327/353] Installing f2c-0:20210928-10. 100% | 37.2 MiB/s | 686.1 KiB | 00m00s [328/353] Installing google-cpu_feature 100% | 29.3 MiB/s | 30.0 KiB | 00m00s [329/353] Installing libsbw-devel-0:2.1 100% | 73.2 MiB/s | 449.7 KiB | 00m00s [330/353] Installing python3-devel-0:3. 100% | 41.4 MiB/s | 1.8 MiB | 00m00s [331/353] Installing qwtplot3d-qt5-deve 100% | 81.5 MiB/s | 417.2 KiB | 00m00s [332/353] Installing qcustomplot-qt5-de 100% | 98.9 MiB/s | 303.8 KiB | 00m00s [333/353] Installing python3-setuptools 100% | 85.1 MiB/s | 8.8 MiB | 00m00s [334/353] Installing freeglut-devel-0:3 100% | 59.4 MiB/s | 2.3 MiB | 00m00s [335/353] Installing ImageMagick-1:7.1. 100% | 5.4 MiB/s | 93.2 KiB | 00m00s [336/353] Installing libcurl-devel-0:8. 100% | 25.7 MiB/s | 1.4 MiB | 00m00s [337/353] Installing libxslt-devel-0:1. 100% | 35.2 MiB/s | 972.9 KiB | 00m00s [338/353] Installing libCombine-devel-0 100% | 116.7 MiB/s | 358.6 KiB | 00m00s [339/353] Installing annobin-plugin-gcc 100% | 28.6 MiB/s | 995.1 KiB | 00m00s [340/353] Installing libappstream-glib- 100% | 50.6 MiB/s | 1.4 MiB | 00m00s [341/353] Installing gcc-plugin-annobin 100% | 1.4 MiB/s | 58.8 KiB | 00m00s [342/353] Installing flexiblas-devel-0: 100% | 119.6 MiB/s | 4.9 MiB | 00m00s [343/353] Installing libsedml-devel-2:2 100% | 136.9 MiB/s | 2.7 MiB | 00m00s [344/353] Installing libnuml-devel-0:1. 100% | 76.6 MiB/s | 313.8 KiB | 00m00s [345/353] Installing minizip-ng-compat- 100% | 44.9 MiB/s | 91.9 KiB | 00m00s [346/353] Installing zipper-devel-0:1.0 100% | 35.8 MiB/s | 73.4 KiB | 00m00s [347/353] Installing bison-0:3.8.2-10.f 100% | 30.6 MiB/s | 3.5 MiB | 00m00s [348/353] Installing flex-0:2.6.4-19.fc 100% | 37.9 MiB/s | 815.3 KiB | 00m00s [349/353] Installing desktop-file-utils 100% | 13.6 MiB/s | 222.2 KiB | 00m00s [350/353] Installing expat-devel-0:2.7. 100% | 33.5 MiB/s | 205.5 KiB | 00m00s [351/353] Installing swig-0:4.3.1-1.fc4 100% | 21.1 MiB/s | 6.4 MiB | 00m00s [352/353] Installing libnuml-static-0:1 100% | 316.9 MiB/s | 649.0 KiB | 00m00s [353/353] Installing bzip2-devel-0:1.0. 100% | 238.1 KiB/s | 310.7 KiB | 00m01s Warning: skipped OpenPGP checks for 350 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: build setup for COPASI-4.45.298-3.fc43.src.rpm Start: rpmbuild COPASI-4.45.298-3.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1747267200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.H9uJv0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.VgkhJs + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + cd /builddir/build/BUILD/COPASI-4.45.298-build + rm -rf COPASI-Build-298 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/COPASI-Build-298.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd COPASI-Build-298 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -f license.txt ++ find copasi -type f '(' -name '*.cpp' ')' + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + touch -r copasi/ABiochem/1d.cpp copasi/ABiochem/1d.cpp.new + mv copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + touch -r copasi/ABiochem/CGene.cpp copasi/ABiochem/CGene.cpp.new + mv copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + touch -r copasi/ABiochem/Erdos.cpp copasi/ABiochem/Erdos.cpp.new + mv copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + touch -r copasi/ABiochem/ab.cpp copasi/ABiochem/ab.cpp.new + mv copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + touch -r copasi/ABiochem/abiochem.cpp copasi/ABiochem/abiochem.cpp.new + mv copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + touch -r copasi/ABiochem/clo.cpp copasi/ABiochem/clo.cpp.new + mv copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + touch -r copasi/ABiochem/wattstrog.cpp copasi/ABiochem/wattstrog.cpp.new + mv copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + touch -r copasi/CopasiDataModel/CDataModel.cpp copasi/CopasiDataModel/CDataModel.cpp.new + mv copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + touch -r copasi/CopasiDataModel/CInfo.cpp copasi/CopasiDataModel/CInfo.cpp.new + mv copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + touch -r copasi/CopasiSBW/SBWTranslator.cpp copasi/CopasiSBW/SBWTranslator.cpp.new + mv copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + touch -r copasi/CopasiSE/CopasiSE.cpp copasi/CopasiSE/CopasiSE.cpp.new + mv copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + touch -r copasi/CopasiUI/main.cpp copasi/CopasiUI/main.cpp.new + mv copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + touch -r copasi/MIRIAM/CBiologicalDescription.cpp copasi/MIRIAM/CBiologicalDescription.cpp.new + mv copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + touch -r copasi/MIRIAM/CConstants.cpp copasi/MIRIAM/CConstants.cpp.new + mv copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + touch -r copasi/MIRIAM/CCreator.cpp copasi/MIRIAM/CCreator.cpp.new + mv copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + touch -r copasi/MIRIAM/CMIRIAMResource.cpp copasi/MIRIAM/CMIRIAMResource.cpp.new + mv copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + touch -r copasi/MIRIAM/CModelMIRIAMInfo.cpp copasi/MIRIAM/CModelMIRIAMInfo.cpp.new + mv copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + touch -r copasi/MIRIAM/CModified.cpp copasi/MIRIAM/CModified.cpp.new + mv copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + touch -r copasi/MIRIAM/CRDFGraph.cpp copasi/MIRIAM/CRDFGraph.cpp.new + mv copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + touch -r copasi/MIRIAM/CRDFGraphConverter.cpp copasi/MIRIAM/CRDFGraphConverter.cpp.new + mv copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + touch -r copasi/MIRIAM/CRDFLiteral.cpp copasi/MIRIAM/CRDFLiteral.cpp.new + mv copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + touch -r copasi/MIRIAM/CRDFNode.cpp copasi/MIRIAM/CRDFNode.cpp.new + mv copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + touch -r copasi/MIRIAM/CRDFObject.cpp copasi/MIRIAM/CRDFObject.cpp.new + mv copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + touch -r copasi/MIRIAM/CRDFParser.cpp copasi/MIRIAM/CRDFParser.cpp.new + mv copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + touch -r copasi/MIRIAM/CRDFPredicate.cpp copasi/MIRIAM/CRDFPredicate.cpp.new + mv copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + touch -r copasi/MIRIAM/CRDFSubject.cpp copasi/MIRIAM/CRDFSubject.cpp.new + mv copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + touch -r copasi/MIRIAM/CRDFTriplet.cpp copasi/MIRIAM/CRDFTriplet.cpp.new + mv copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + touch -r copasi/MIRIAM/CRDFUtilities.cpp copasi/MIRIAM/CRDFUtilities.cpp.new + mv copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + touch -r copasi/MIRIAM/CRDFWriter.cpp copasi/MIRIAM/CRDFWriter.cpp.new + mv copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + touch -r copasi/MIRIAM/CRaptorInit.cpp copasi/MIRIAM/CRaptorInit.cpp.new + mv copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + touch -r copasi/MIRIAM/CReference.cpp copasi/MIRIAM/CReference.cpp.new + mv copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + touch -r copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new + mv copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + touch -r copasi/MIRIAMUI/CQCreatorDM.cpp copasi/MIRIAMUI/CQCreatorDM.cpp.new + mv copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + touch -r copasi/MIRIAMUI/CQMiriamWidget.cpp copasi/MIRIAMUI/CQMiriamWidget.cpp.new + mv copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + touch -r copasi/MIRIAMUI/CQModifiedDM.cpp copasi/MIRIAMUI/CQModifiedDM.cpp.new + mv copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeView.cpp copasi/MIRIAMUI/CQRDFTreeView.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeViewItem.cpp copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + touch -r copasi/MIRIAMUI/CQReferenceDM.cpp copasi/MIRIAMUI/CQReferenceDM.cpp.new + mv copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CContext.cpp.new copasi/OpenMP/CContext.cpp + touch -r copasi/OpenMP/CContext.cpp copasi/OpenMP/CContext.cpp.new + mv copasi/OpenMP/CContext.cpp.new copasi/OpenMP/CContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CMathContext.cpp.new copasi/OpenMP/CMathContext.cpp + touch -r copasi/OpenMP/CMathContext.cpp copasi/OpenMP/CMathContext.cpp.new + mv copasi/OpenMP/CMathContext.cpp.new copasi/OpenMP/CMathContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CRandomContext.cpp.new copasi/OpenMP/CRandomContext.cpp + touch -r copasi/OpenMP/CRandomContext.cpp copasi/OpenMP/CRandomContext.cpp.new + mv copasi/OpenMP/CRandomContext.cpp.new copasi/OpenMP/CRandomContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/logging/CLogger.cpp.new copasi/OpenMP/logging/CLogger.cpp + touch -r copasi/OpenMP/logging/CLogger.cpp copasi/OpenMP/logging/CLogger.cpp.new + mv copasi/OpenMP/logging/CLogger.cpp.new copasi/OpenMP/logging/CLogger.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + touch -r copasi/Provenance/CProvenanceXMLWriter.cpp copasi/Provenance/CProvenanceXMLWriter.cpp.new + mv copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + touch -r copasi/UI/AboutDialog.cpp copasi/UI/AboutDialog.cpp.new + mv copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + touch -r copasi/UI/CColorScale.cpp copasi/UI/CColorScale.cpp.new + mv copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new copasi/UI/CCopasiPlot2YSelectionDialog.cpp + touch -r copasi/UI/CCopasiPlot2YSelectionDialog.cpp copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new + mv copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new copasi/UI/CCopasiPlot2YSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + touch -r copasi/UI/CCopasiPlotSelectionDialog.cpp copasi/UI/CCopasiPlotSelectionDialog.cpp.new + mv copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + touch -r copasi/UI/CCopasiSelectionDialog.cpp copasi/UI/CCopasiSelectionDialog.cpp.new + mv copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + touch -r copasi/UI/CCopasiSelectionWidget.cpp copasi/UI/CCopasiSelectionWidget.cpp.new + mv copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + touch -r copasi/UI/CEntityProvenanceDialog.cpp copasi/UI/CEntityProvenanceDialog.cpp.new + mv copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + touch -r copasi/UI/CLNAResultSubwidget.cpp copasi/UI/CLNAResultSubwidget.cpp.new + mv copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + touch -r copasi/UI/CLNAResultWidget.cpp copasi/UI/CLNAResultWidget.cpp.new + mv copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + touch -r copasi/UI/CMCAResultSubwidget.cpp copasi/UI/CMCAResultSubwidget.cpp.new + mv copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + touch -r copasi/UI/CMCAResultWidget.cpp copasi/UI/CMCAResultWidget.cpp.new + mv copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + touch -r copasi/UI/CProgressBar.cpp copasi/UI/CProgressBar.cpp.new + mv copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + touch -r copasi/UI/CProvenanceDialog.cpp copasi/UI/CProvenanceDialog.cpp.new + mv copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + touch -r copasi/UI/CQAnalyticsWidget.cpp copasi/UI/CQAnalyticsWidget.cpp.new + mv copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + touch -r copasi/UI/CQArrayAnnotationsWidget.cpp copasi/UI/CQArrayAnnotationsWidget.cpp.new + mv copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + touch -r copasi/UI/CQArrayAnnotationsWidgetDM.cpp copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new + mv copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + touch -r copasi/UI/CQBaseDataModel.cpp copasi/UI/CQBaseDataModel.cpp.new + mv copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBaseTreeDataModel.cpp.new copasi/UI/CQBaseTreeDataModel.cpp + touch -r copasi/UI/CQBaseTreeDataModel.cpp copasi/UI/CQBaseTreeDataModel.cpp.new + mv copasi/UI/CQBaseTreeDataModel.cpp.new copasi/UI/CQBaseTreeDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + touch -r copasi/UI/CQBrowserPane.cpp copasi/UI/CQBrowserPane.cpp.new + mv copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + touch -r copasi/UI/CQBrowserPaneDM.cpp copasi/UI/CQBrowserPaneDM.cpp.new + mv copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + touch -r copasi/UI/CQCheckModelWindow.cpp copasi/UI/CQCheckModelWindow.cpp.new + mv copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + touch -r copasi/UI/CQComboDelegate.cpp copasi/UI/CQComboDelegate.cpp.new + mv copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + touch -r copasi/UI/CQCompartment.cpp copasi/UI/CQCompartment.cpp.new + mv copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + touch -r copasi/UI/CQCompartmentCopyOptions.cpp copasi/UI/CQCompartmentCopyOptions.cpp.new + mv copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + touch -r copasi/UI/CQCompartmentDM.cpp copasi/UI/CQCompartmentDM.cpp.new + mv copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + touch -r copasi/UI/CQCompartmentsWidget.cpp copasi/UI/CQCompartmentsWidget.cpp.new + mv copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + touch -r copasi/UI/CQCopasiApplication.cpp copasi/UI/CQCopasiApplication.cpp.new + mv copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + touch -r copasi/UI/CQCrossSectionTaskWidget.cpp copasi/UI/CQCrossSectionTaskWidget.cpp.new + mv copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + touch -r copasi/UI/CQDateTimeEditDelegate.cpp copasi/UI/CQDateTimeEditDelegate.cpp.new + mv copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + touch -r copasi/UI/CQDependenciesWidget.cpp copasi/UI/CQDependenciesWidget.cpp.new + mv copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + touch -r copasi/UI/CQDependencyDialog.cpp copasi/UI/CQDependencyDialog.cpp.new + mv copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + touch -r copasi/UI/CQDependencyWidget.cpp copasi/UI/CQDependencyWidget.cpp.new + mv copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + touch -r copasi/UI/CQDifferentialEquations.cpp copasi/UI/CQDifferentialEquations.cpp.new + mv copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + touch -r copasi/UI/CQEFMListWidget.cpp copasi/UI/CQEFMListWidget.cpp.new + mv copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + touch -r copasi/UI/CQEFMNetReactionDM.cpp copasi/UI/CQEFMNetReactionDM.cpp.new + mv copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + touch -r copasi/UI/CQEFMReactionDM.cpp copasi/UI/CQEFMReactionDM.cpp.new + mv copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + touch -r copasi/UI/CQEFMResultWidget.cpp copasi/UI/CQEFMResultWidget.cpp.new + mv copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + touch -r copasi/UI/CQEFMSpeciesDM.cpp copasi/UI/CQEFMSpeciesDM.cpp.new + mv copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + touch -r copasi/UI/CQEFMWidget.cpp copasi/UI/CQEFMWidget.cpp.new + mv copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + touch -r copasi/UI/CQEventDM.cpp copasi/UI/CQEventDM.cpp.new + mv copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + touch -r copasi/UI/CQEventWidget1.cpp copasi/UI/CQEventWidget1.cpp.new + mv copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + touch -r copasi/UI/CQEventsWidget.cpp copasi/UI/CQEventsWidget.cpp.new + mv copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + touch -r copasi/UI/CQExpandModelData.cpp copasi/UI/CQExpandModelData.cpp.new + mv copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + touch -r copasi/UI/CQExperimentData.cpp copasi/UI/CQExperimentData.cpp.new + mv copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + touch -r copasi/UI/CQExperimentSelection.cpp copasi/UI/CQExperimentSelection.cpp.new + mv copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + touch -r copasi/UI/CQExpressionMmlStackedWidget.cpp copasi/UI/CQExpressionMmlStackedWidget.cpp.new + mv copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + touch -r copasi/UI/CQExpressionWidget.cpp copasi/UI/CQExpressionWidget.cpp.new + mv copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExternalToolDialog.cpp.new copasi/UI/CQExternalToolDialog.cpp + touch -r copasi/UI/CQExternalToolDialog.cpp copasi/UI/CQExternalToolDialog.cpp.new + mv copasi/UI/CQExternalToolDialog.cpp.new copasi/UI/CQExternalToolDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExternalTools.cpp.new copasi/UI/CQExternalTools.cpp + touch -r copasi/UI/CQExternalTools.cpp copasi/UI/CQExternalTools.cpp.new + mv copasi/UI/CQExternalTools.cpp.new copasi/UI/CQExternalTools.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + touch -r copasi/UI/CQFittingItemWidget.cpp copasi/UI/CQFittingItemWidget.cpp.new + mv copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + touch -r copasi/UI/CQFittingResult.cpp copasi/UI/CQFittingResult.cpp.new + mv copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + touch -r copasi/UI/CQFittingResultTab1.cpp copasi/UI/CQFittingResultTab1.cpp.new + mv copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + touch -r copasi/UI/CQFittingWidget.cpp copasi/UI/CQFittingWidget.cpp.new + mv copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + touch -r copasi/UI/CQFluxModeDM.cpp copasi/UI/CQFluxModeDM.cpp.new + mv copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + touch -r copasi/UI/CQFunctionDM.cpp copasi/UI/CQFunctionDM.cpp.new + mv copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + touch -r copasi/UI/CQFunctionsWidget.cpp copasi/UI/CQFunctionsWidget.cpp.new + mv copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + touch -r copasi/UI/CQGlobalQuantitiesWidget.cpp copasi/UI/CQGlobalQuantitiesWidget.cpp.new + mv copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + touch -r copasi/UI/CQGlobalQuantityDM.cpp copasi/UI/CQGlobalQuantityDM.cpp.new + mv copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + touch -r copasi/UI/CQLNAWidget.cpp copasi/UI/CQLNAWidget.cpp.new + mv copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + touch -r copasi/UI/CQLayoutsDM.cpp copasi/UI/CQLayoutsDM.cpp.new + mv copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + touch -r copasi/UI/CQLayoutsWidget.cpp copasi/UI/CQLayoutsWidget.cpp.new + mv copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + touch -r copasi/UI/CQLyapResultWidget.cpp copasi/UI/CQLyapResultWidget.cpp.new + mv copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + touch -r copasi/UI/CQLyapWidget.cpp copasi/UI/CQLyapWidget.cpp.new + mv copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + touch -r copasi/UI/CQMCAWidget.cpp copasi/UI/CQMCAWidget.cpp.new + mv copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + touch -r copasi/UI/CQMathMatrixWidget.cpp copasi/UI/CQMathMatrixWidget.cpp.new + mv copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + touch -r copasi/UI/CQMatrixDialog.cpp copasi/UI/CQMatrixDialog.cpp.new + mv copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + touch -r copasi/UI/CQMergingData.cpp copasi/UI/CQMergingData.cpp.new + mv copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + touch -r copasi/UI/CQMessageBox.cpp copasi/UI/CQMessageBox.cpp.new + mv copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + touch -r copasi/UI/CQMmlScrollView.cpp copasi/UI/CQMmlScrollView.cpp.new + mv copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + touch -r copasi/UI/CQModelValue.cpp copasi/UI/CQModelValue.cpp.new + mv copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + touch -r copasi/UI/CQModelWidget.cpp copasi/UI/CQModelWidget.cpp.new + mv copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + touch -r copasi/UI/CQMoietiesTaskResult.cpp copasi/UI/CQMoietiesTaskResult.cpp.new + mv copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + touch -r copasi/UI/CQMoietiesTaskWidget.cpp copasi/UI/CQMoietiesTaskWidget.cpp.new + mv copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + touch -r copasi/UI/CQMultipleSelectionDialog.cpp copasi/UI/CQMultipleSelectionDialog.cpp.new + mv copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + touch -r copasi/UI/CQNameSelectionDialog.cpp copasi/UI/CQNameSelectionDialog.cpp.new + mv copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + touch -r copasi/UI/CQNotes.cpp copasi/UI/CQNotes.cpp.new + mv copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + touch -r copasi/UI/CQOptPopulation.cpp copasi/UI/CQOptPopulation.cpp.new + mv copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + touch -r copasi/UI/CQOptimizationResult.cpp copasi/UI/CQOptimizationResult.cpp.new + mv copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + touch -r copasi/UI/CQOptimizationWidget.cpp copasi/UI/CQOptimizationWidget.cpp.new + mv copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + touch -r copasi/UI/CQOscillationTaskWidget.cpp copasi/UI/CQOscillationTaskWidget.cpp.new + mv copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + touch -r copasi/UI/CQParameterEstimationResult.cpp copasi/UI/CQParameterEstimationResult.cpp.new + mv copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + touch -r copasi/UI/CQParameterGroupDM.cpp copasi/UI/CQParameterGroupDM.cpp.new + mv copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + touch -r copasi/UI/CQParameterGroupView.cpp copasi/UI/CQParameterGroupView.cpp.new + mv copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + touch -r copasi/UI/CQParameterOverviewDM.cpp copasi/UI/CQParameterOverviewDM.cpp.new + mv copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + touch -r copasi/UI/CQParameterOverviewWidget.cpp copasi/UI/CQParameterOverviewWidget.cpp.new + mv copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + touch -r copasi/UI/CQParameterResultItemModel.cpp copasi/UI/CQParameterResultItemModel.cpp.new + mv copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + touch -r copasi/UI/CQParameterSetsDM.cpp copasi/UI/CQParameterSetsDM.cpp.new + mv copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + touch -r copasi/UI/CQParameterSetsWidget.cpp copasi/UI/CQParameterSetsWidget.cpp.new + mv copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + touch -r copasi/UI/CQPlotDM.cpp copasi/UI/CQPlotDM.cpp.new + mv copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + touch -r copasi/UI/CQPlotsWidget.cpp copasi/UI/CQPlotsWidget.cpp.new + mv copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + touch -r copasi/UI/CQPreferenceDialog.cpp copasi/UI/CQPreferenceDialog.cpp.new + mv copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + touch -r copasi/UI/CQProgressDialog.cpp copasi/UI/CQProgressDialog.cpp.new + mv copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + touch -r copasi/UI/CQProgressItem.cpp copasi/UI/CQProgressItem.cpp.new + mv copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + touch -r copasi/UI/CQProgressItemBar.cpp copasi/UI/CQProgressItemBar.cpp.new + mv copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + touch -r copasi/UI/CQProgressItemText.cpp copasi/UI/CQProgressItemText.cpp.new + mv copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + touch -r copasi/UI/CQPushButtonDelegate.cpp copasi/UI/CQPushButtonDelegate.cpp.new + mv copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + touch -r copasi/UI/CQReactionDM.cpp copasi/UI/CQReactionDM.cpp.new + mv copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + touch -r copasi/UI/CQReactionsWidget.cpp copasi/UI/CQReactionsWidget.cpp.new + mv copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + touch -r copasi/UI/CQReportDM.cpp copasi/UI/CQReportDM.cpp.new + mv copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + touch -r copasi/UI/CQReportDefinition.cpp copasi/UI/CQReportDefinition.cpp.new + mv copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + touch -r copasi/UI/CQReportDefinitionSelect.cpp copasi/UI/CQReportDefinitionSelect.cpp.new + mv copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + touch -r copasi/UI/CQReportListItem.cpp copasi/UI/CQReportListItem.cpp.new + mv copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + touch -r copasi/UI/CQReportsWidget.cpp copasi/UI/CQReportsWidget.cpp.new + mv copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + touch -r copasi/UI/CQSBMLFileDialog.cpp copasi/UI/CQSBMLFileDialog.cpp.new + mv copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + touch -r copasi/UI/CQSEDMLFileDialog.cpp copasi/UI/CQSEDMLFileDialog.cpp.new + mv copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSEDMLImportDialog.cpp.new copasi/UI/CQSEDMLImportDialog.cpp + touch -r copasi/UI/CQSEDMLImportDialog.cpp copasi/UI/CQSEDMLImportDialog.cpp.new + mv copasi/UI/CQSEDMLImportDialog.cpp.new copasi/UI/CQSEDMLImportDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQScanWidgetParameterSet.cpp.new copasi/UI/CQScanWidgetParameterSet.cpp + touch -r copasi/UI/CQScanWidgetParameterSet.cpp copasi/UI/CQScanWidgetParameterSet.cpp.new + mv copasi/UI/CQScanWidgetParameterSet.cpp.new copasi/UI/CQScanWidgetParameterSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + touch -r copasi/UI/CQScrolledDependenciesWidget.cpp copasi/UI/CQScrolledDependenciesWidget.cpp.new + mv copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + touch -r copasi/UI/CQSensResultWidget.cpp copasi/UI/CQSensResultWidget.cpp.new + mv copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + touch -r copasi/UI/CQSimpleSelectionTree.cpp copasi/UI/CQSimpleSelectionTree.cpp.new + mv copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + touch -r copasi/UI/CQSortFilterProxyModel.cpp copasi/UI/CQSortFilterProxyModel.cpp.new + mv copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + touch -r copasi/UI/CQSpecieDM.cpp copasi/UI/CQSpecieDM.cpp.new + mv copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + touch -r copasi/UI/CQSpeciesDetail.cpp copasi/UI/CQSpeciesDetail.cpp.new + mv copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + touch -r copasi/UI/CQSpeciesWidget.cpp copasi/UI/CQSpeciesWidget.cpp.new + mv copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + touch -r copasi/UI/CQSpinBoxDelegate.cpp copasi/UI/CQSpinBoxDelegate.cpp.new + mv copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + touch -r copasi/UI/CQSplashWidget.cpp copasi/UI/CQSplashWidget.cpp.new + mv copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + touch -r copasi/UI/CQStartValueReset.cpp copasi/UI/CQStartValueReset.cpp.new + mv copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + touch -r copasi/UI/CQSteadyStateResult.cpp copasi/UI/CQSteadyStateResult.cpp.new + mv copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + touch -r copasi/UI/CQTSSAResultSubWidget.cpp copasi/UI/CQTSSAResultSubWidget.cpp.new + mv copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + touch -r copasi/UI/CQTSSAResultWidget.cpp copasi/UI/CQTSSAResultWidget.cpp.new + mv copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + touch -r copasi/UI/CQTSSATimeScaleWidget.cpp copasi/UI/CQTSSATimeScaleWidget.cpp.new + mv copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + touch -r copasi/UI/CQTSSAWidget.cpp copasi/UI/CQTSSAWidget.cpp.new + mv copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + touch -r copasi/UI/CQTabWidget.cpp copasi/UI/CQTabWidget.cpp.new + mv copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + touch -r copasi/UI/CQTableView.cpp copasi/UI/CQTableView.cpp.new + mv copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTableWidget.cpp.new copasi/UI/CQTableWidget.cpp + touch -r copasi/UI/CQTableWidget.cpp copasi/UI/CQTableWidget.cpp.new + mv copasi/UI/CQTableWidget.cpp.new copasi/UI/CQTableWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + touch -r copasi/UI/CQTaskBtnWidget.cpp copasi/UI/CQTaskBtnWidget.cpp.new + mv copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + touch -r copasi/UI/CQTaskHeaderWidget.cpp copasi/UI/CQTaskHeaderWidget.cpp.new + mv copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + touch -r copasi/UI/CQTaskMethodWidget.cpp copasi/UI/CQTaskMethodWidget.cpp.new + mv copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + touch -r copasi/UI/CQTaskThread.cpp copasi/UI/CQTaskThread.cpp.new + mv copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + touch -r copasi/UI/CQTextDialog.cpp copasi/UI/CQTextDialog.cpp.new + mv copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + touch -r copasi/UI/CQThread.cpp copasi/UI/CQThread.cpp.new + mv copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSensWidget.cpp.new copasi/UI/CQTimeSensWidget.cpp + touch -r copasi/UI/CQTimeSensWidget.cpp copasi/UI/CQTimeSensWidget.cpp.new + mv copasi/UI/CQTimeSensWidget.cpp.new copasi/UI/CQTimeSensWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + touch -r copasi/UI/CQTimeSeriesDM.cpp copasi/UI/CQTimeSeriesDM.cpp.new + mv copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + touch -r copasi/UI/CQTimeSeriesWidget.cpp copasi/UI/CQTimeSeriesWidget.cpp.new + mv copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + touch -r copasi/UI/CQTrajectoryWidget.cpp copasi/UI/CQTrajectoryWidget.cpp.new + mv copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + touch -r copasi/UI/CQUndoTester.cpp copasi/UI/CQUndoTester.cpp.new + mv copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + touch -r copasi/UI/CQUnitDM.cpp copasi/UI/CQUnitDM.cpp.new + mv copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + touch -r copasi/UI/CQUnitDetail.cpp copasi/UI/CQUnitDetail.cpp.new + mv copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + touch -r copasi/UI/CQUnitsWidget.cpp copasi/UI/CQUnitsWidget.cpp.new + mv copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + touch -r copasi/UI/CQUpdateAvogadro.cpp copasi/UI/CQUpdateAvogadro.cpp.new + mv copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + touch -r copasi/UI/CQUpdatesWidget.cpp copasi/UI/CQUpdatesWidget.cpp.new + mv copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + touch -r copasi/UI/CQValidator.cpp copasi/UI/CQValidator.cpp.new + mv copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + touch -r copasi/UI/CQValidatorUnit.cpp copasi/UI/CQValidatorUnit.cpp.new + mv copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + touch -r copasi/UI/CScanContainerWidget.cpp copasi/UI/CScanContainerWidget.cpp.new + mv copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + touch -r copasi/UI/CScanItemData.cpp copasi/UI/CScanItemData.cpp.new + mv copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + touch -r copasi/UI/CScanWidgetRandom.cpp copasi/UI/CScanWidgetRandom.cpp.new + mv copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + touch -r copasi/UI/CScanWidgetRepeat.cpp copasi/UI/CScanWidgetRepeat.cpp.new + mv copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + touch -r copasi/UI/CScanWidgetScan.cpp copasi/UI/CScanWidgetScan.cpp.new + mv copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + touch -r copasi/UI/CScanWidgetTask.cpp copasi/UI/CScanWidgetTask.cpp.new + mv copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + touch -r copasi/UI/CUpDownSubwidget.cpp copasi/UI/CUpDownSubwidget.cpp.new + mv copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + touch -r copasi/UI/CWindowInterface.cpp copasi/UI/CWindowInterface.cpp.new + mv copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + touch -r copasi/UI/CopasiFileDialog.cpp copasi/UI/CopasiFileDialog.cpp.new + mv copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + touch -r copasi/UI/CopasiSlider.cpp copasi/UI/CopasiSlider.cpp.new + mv copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + touch -r copasi/UI/DataModelGUI.cpp copasi/UI/DataModelGUI.cpp.new + mv copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + touch -r copasi/UI/DefaultplotDialog.cpp copasi/UI/DefaultplotDialog.cpp.new + mv copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + touch -r copasi/UI/FunctionWidget1.cpp copasi/UI/FunctionWidget1.cpp.new + mv copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + touch -r copasi/UI/MyLineEdit.cpp copasi/UI/MyLineEdit.cpp.new + mv copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + touch -r copasi/UI/ObjectBrowserDialog.cpp copasi/UI/ObjectBrowserDialog.cpp.new + mv copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + touch -r copasi/UI/ObjectBrowserItem.cpp copasi/UI/ObjectBrowserItem.cpp.new + mv copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + touch -r copasi/UI/ObjectBrowserWidget.cpp copasi/UI/ObjectBrowserWidget.cpp.new + mv copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + touch -r copasi/UI/ReactionsWidget1.cpp copasi/UI/ReactionsWidget1.cpp.new + mv copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + touch -r copasi/UI/ScanWidget.cpp copasi/UI/ScanWidget.cpp.new + mv copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + touch -r copasi/UI/SensWidgetComboBox.cpp copasi/UI/SensWidgetComboBox.cpp.new + mv copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + touch -r copasi/UI/SensitivitiesWidget.cpp copasi/UI/SensitivitiesWidget.cpp.new + mv copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + touch -r copasi/UI/SliderDialog.cpp copasi/UI/SliderDialog.cpp.new + mv copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + touch -r copasi/UI/SliderSettingsDialog.cpp copasi/UI/SliderSettingsDialog.cpp.new + mv copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + touch -r copasi/UI/StateSubwidget.cpp copasi/UI/StateSubwidget.cpp.new + mv copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + touch -r copasi/UI/SteadyStateWidget.cpp copasi/UI/SteadyStateWidget.cpp.new + mv copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + touch -r copasi/UI/TaskWidget.cpp copasi/UI/TaskWidget.cpp.new + mv copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + touch -r copasi/UI/copasiWidget.cpp copasi/UI/copasiWidget.cpp.new + mv copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + touch -r copasi/UI/copasiui3window.cpp copasi/UI/copasiui3window.cpp.new + mv copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + touch -r copasi/UI/listviews.cpp copasi/UI/listviews.cpp.new + mv copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + touch -r copasi/UI/objectdebug.cpp copasi/UI/objectdebug.cpp.new + mv copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + touch -r copasi/UI/parametertable.cpp copasi/UI/parametertable.cpp.new + mv copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + touch -r copasi/UI/qtUtilities.cpp copasi/UI/qtUtilities.cpp.new + mv copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + touch -r copasi/ViewCurrentUI/arguments.cpp copasi/ViewCurrentUI/arguments.cpp.new + mv copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + touch -r copasi/ViewCurrentUI/main.cpp copasi/ViewCurrentUI/main.cpp.new + mv copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + touch -r copasi/ViewCurrentUI/worker.cpp copasi/ViewCurrentUI/worker.cpp.new + mv copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + touch -r copasi/analytics/CAnalyticsMethod.cpp copasi/analytics/CAnalyticsMethod.cpp.new + mv copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + touch -r copasi/analytics/CAnalyticsProblem.cpp copasi/analytics/CAnalyticsProblem.cpp.new + mv copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + touch -r copasi/analytics/CAnalyticsTask.cpp copasi/analytics/CAnalyticsTask.cpp.new + mv copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + touch -r copasi/analytics/CStatistics.cpp copasi/analytics/CStatistics.cpp.new + mv copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/CQ3DBarsModifier.cpp.new copasi/barChart/CQ3DBarsModifier.cpp + touch -r copasi/barChart/CQ3DBarsModifier.cpp copasi/barChart/CQ3DBarsModifier.cpp.new + mv copasi/barChart/CQ3DBarsModifier.cpp.new copasi/barChart/CQ3DBarsModifier.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + touch -r copasi/barChart/CQBaseWidget.cpp copasi/barChart/CQBaseWidget.cpp.new + mv copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + touch -r copasi/barChart/qwt3dBars.cpp copasi/barChart/qwt3dBars.cpp.new + mv copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + touch -r copasi/barChart/qwt3dColor.cpp copasi/barChart/qwt3dColor.cpp.new + mv copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + touch -r copasi/barChart/qwt3dPlot.cpp copasi/barChart/qwt3dPlot.cpp.new + mv copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + touch -r copasi/barChart/qwt3dScale.cpp copasi/barChart/qwt3dScale.cpp.new + mv copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + touch -r copasi/bindings/R/RProcessCallback.cpp copasi/bindings/R/RProcessCallback.cpp.new + mv copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + touch -r copasi/bindings/R/local.cpp copasi/bindings/R/local.cpp.new + mv copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + touch -r copasi/bindings/common/downcast_common.cpp copasi/bindings/common/downcast_common.cpp.new + mv copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + touch -r copasi/bindings/common/local_common.cpp copasi/bindings/common/local_common.cpp.new + mv copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + touch -r copasi/bindings/cpp_examples/assignParameterSet/main.cpp copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new + mv copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + touch -r copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new + mv copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new copasi/bindings/cpp_examples/changeValues/changeValues.cpp + touch -r copasi/bindings/cpp_examples/changeValues/changeValues.cpp copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new + mv copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new copasi/bindings/cpp_examples/changeValues/changeValues.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + touch -r copasi/bindings/cpp_examples/example1/example1.cpp copasi/bindings/cpp_examples/example1/example1.cpp.new + mv copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + touch -r copasi/bindings/cpp_examples/example10/example10.cpp copasi/bindings/cpp_examples/example10/example10.cpp.new + mv copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + touch -r copasi/bindings/cpp_examples/example2/example2.cpp copasi/bindings/cpp_examples/example2/example2.cpp.new + mv copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + touch -r copasi/bindings/cpp_examples/example3/example3.cpp copasi/bindings/cpp_examples/example3/example3.cpp.new + mv copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + touch -r copasi/bindings/cpp_examples/example4/example4.cpp copasi/bindings/cpp_examples/example4/example4.cpp.new + mv copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + touch -r copasi/bindings/cpp_examples/example5/example5.cpp copasi/bindings/cpp_examples/example5/example5.cpp.new + mv copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + touch -r copasi/bindings/cpp_examples/example6/example6.cpp copasi/bindings/cpp_examples/example6/example6.cpp.new + mv copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + touch -r copasi/bindings/cpp_examples/example7/example7.cpp copasi/bindings/cpp_examples/example7/example7.cpp.new + mv copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + touch -r copasi/bindings/cpp_examples/example8/example8.cpp copasi/bindings/cpp_examples/example8/example8.cpp.new + mv copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + touch -r copasi/bindings/cpp_examples/example9/example9.cpp copasi/bindings/cpp_examples/example9/example9.cpp.new + mv copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + touch -r copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new + mv copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + touch -r copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new + mv copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + touch -r copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new + mv copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + touch -r copasi/bindings/cpp_examples/renameActiveReport/main.cpp copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new + mv copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + touch -r copasi/bindings/cpp_examples/renderLayout/main.cpp copasi/bindings/cpp_examples/renderLayout/main.cpp.new + mv copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/runScan/runScan.cpp.new copasi/bindings/cpp_examples/runScan/runScan.cpp + touch -r copasi/bindings/cpp_examples/runScan/runScan.cpp copasi/bindings/cpp_examples/runScan/runScan.cpp.new + mv copasi/bindings/cpp_examples/runScan/runScan.cpp.new copasi/bindings/cpp_examples/runScan/runScan.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + touch -r copasi/bindings/cpp_examples/runSedML/runSedML.cpp copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new + mv copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + touch -r copasi/bindings/csharp/local.cpp copasi/bindings/csharp/local.cpp.new + mv copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + touch -r copasi/bindings/java/local.cpp copasi/bindings/java/local.cpp.new + mv copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + touch -r copasi/bindings/octave/local.cpp copasi/bindings/octave/local.cpp.new + mv copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + touch -r copasi/bindings/perl/local.cpp copasi/bindings/perl/local.cpp.new + mv copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + touch -r copasi/bindings/python/local.cpp copasi/bindings/python/local.cpp.new + mv copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + touch -r copasi/commandline/CConfigurationFile.cpp copasi/commandline/CConfigurationFile.cpp.new + mv copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + touch -r copasi/commandline/CLocaleString.cpp copasi/commandline/CLocaleString.cpp.new + mv copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + touch -r copasi/commandline/COptionParser.cpp copasi/commandline/COptionParser.cpp.new + mv copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + touch -r copasi/commandline/COptions.cpp copasi/commandline/COptions.cpp.new + mv copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + touch -r copasi/compareExpressions/CEvaluationNodeNormalizer.cpp copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new + mv copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + touch -r copasi/compareExpressions/CNormalBase.cpp copasi/compareExpressions/CNormalBase.cpp.new + mv copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + touch -r copasi/compareExpressions/CNormalCall.cpp copasi/compareExpressions/CNormalCall.cpp.new + mv copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + touch -r copasi/compareExpressions/CNormalChoice.cpp copasi/compareExpressions/CNormalChoice.cpp.new + mv copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + touch -r copasi/compareExpressions/CNormalChoiceLogical.cpp copasi/compareExpressions/CNormalChoiceLogical.cpp.new + mv copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + touch -r copasi/compareExpressions/CNormalFraction.cpp copasi/compareExpressions/CNormalFraction.cpp.new + mv copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + touch -r copasi/compareExpressions/CNormalFunction.cpp copasi/compareExpressions/CNormalFunction.cpp.new + mv copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + touch -r copasi/compareExpressions/CNormalGeneralPower.cpp copasi/compareExpressions/CNormalGeneralPower.cpp.new + mv copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + touch -r copasi/compareExpressions/CNormalItem.cpp copasi/compareExpressions/CNormalItem.cpp.new + mv copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + touch -r copasi/compareExpressions/CNormalItemPower.cpp copasi/compareExpressions/CNormalItemPower.cpp.new + mv copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + touch -r copasi/compareExpressions/CNormalLcm.cpp copasi/compareExpressions/CNormalLcm.cpp.new + mv copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + touch -r copasi/compareExpressions/CNormalLogical.cpp copasi/compareExpressions/CNormalLogical.cpp.new + mv copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + touch -r copasi/compareExpressions/CNormalLogicalItem.cpp copasi/compareExpressions/CNormalLogicalItem.cpp.new + mv copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + touch -r copasi/compareExpressions/CNormalProduct.cpp copasi/compareExpressions/CNormalProduct.cpp.new + mv copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + touch -r copasi/compareExpressions/CNormalSum.cpp copasi/compareExpressions/CNormalSum.cpp.new + mv copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + touch -r copasi/compareExpressions/CNormalTranslation.cpp copasi/compareExpressions/CNormalTranslation.cpp.new + mv copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + touch -r copasi/compareExpressions/ConvertToCEvaluationNode.cpp copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new + mv copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + touch -r copasi/compareExpressions/compare_utilities.cpp copasi/compareExpressions/compare_utilities.cpp.new + mv copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + touch -r copasi/compareExpressions/stresstest/stress_test.cpp copasi/compareExpressions/stresstest/stress_test.cpp.new + mv copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + touch -r copasi/compareExpressions/unittests/test.cpp copasi/compareExpressions/unittests/test.cpp.new + mv copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + touch -r copasi/compareExpressions/unittests/test_biomodels217_expression.cpp copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new + mv copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + touch -r copasi/compareExpressions/unittests/test_cnormallogical.cpp copasi/compareExpressions/unittests/test_cnormallogical.cpp.new + mv copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + touch -r copasi/compareExpressions/unittests/test_compare_utilities.cpp copasi/compareExpressions/unittests/test_compare_utilities.cpp.new + mv copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + touch -r copasi/compareExpressions/unittests/test_depth_first_iterator.cpp copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new + mv copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + touch -r copasi/compareExpressions/unittests/test_expression_comparison.cpp copasi/compareExpressions/unittests/test_expression_comparison.cpp.new + mv copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + touch -r copasi/compareExpressions/unittests/test_node_conversion.cpp copasi/compareExpressions/unittests/test_node_conversion.cpp.new + mv copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + touch -r copasi/compareExpressions/unittests/test_normalform.cpp copasi/compareExpressions/unittests/test_normalform.cpp.new + mv copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + touch -r copasi/compareExpressions/unittests/test_simplify.cpp copasi/compareExpressions/unittests/test_simplify.cpp.new + mv copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CArray.cpp.new copasi/core/CArray.cpp + touch -r copasi/core/CArray.cpp copasi/core/CArray.cpp.new + mv copasi/core/CArray.cpp.new copasi/core/CArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CArrayElementReference.cpp.new copasi/core/CArrayElementReference.cpp + touch -r copasi/core/CArrayElementReference.cpp copasi/core/CArrayElementReference.cpp.new + mv copasi/core/CArrayElementReference.cpp.new copasi/core/CArrayElementReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + touch -r copasi/core/CCommonName.cpp copasi/core/CCommonName.cpp.new + mv copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CCore.cpp.new copasi/core/CCore.cpp + touch -r copasi/core/CCore.cpp copasi/core/CCore.cpp.new + mv copasi/core/CCore.cpp.new copasi/core/CCore.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + touch -r copasi/core/CDataArray.cpp copasi/core/CDataArray.cpp.new + mv copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + touch -r copasi/core/CDataContainer.cpp copasi/core/CDataContainer.cpp.new + mv copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + touch -r copasi/core/CDataObject.cpp copasi/core/CDataObject.cpp.new + mv copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataObjectMap.cpp.new copasi/core/CDataObjectMap.cpp + touch -r copasi/core/CDataObjectMap.cpp copasi/core/CDataObjectMap.cpp.new + mv copasi/core/CDataObjectMap.cpp.new copasi/core/CDataObjectMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + touch -r copasi/core/CDataString.cpp copasi/core/CDataString.cpp.new + mv copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + touch -r copasi/core/CDataTimer.cpp copasi/core/CDataTimer.cpp.new + mv copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + touch -r copasi/core/CObjectInterface.cpp copasi/core/CObjectInterface.cpp.new + mv copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + touch -r copasi/core/CRegisteredCommonName.cpp copasi/core/CRegisteredCommonName.cpp.new + mv copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + touch -r copasi/core/CRootContainer.cpp copasi/core/CRootContainer.cpp.new + mv copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + touch -r copasi/crosssection/CCrossSectionMethod.cpp copasi/crosssection/CCrossSectionMethod.cpp.new + mv copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + touch -r copasi/crosssection/CCrossSectionProblem.cpp copasi/crosssection/CCrossSectionProblem.cpp.new + mv copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + touch -r copasi/crosssection/CCrossSectionTask.cpp copasi/crosssection/CCrossSectionTask.cpp.new + mv copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternMethod.cpp copasi/elementaryFluxModes/CBitPatternMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTree.cpp copasi/elementaryFluxModes/CBitPatternTree.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeNode.cpp copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + touch -r copasi/elementaryFluxModes/CEFMAlgorithm.cpp copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new + mv copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + touch -r copasi/elementaryFluxModes/CEFMMethod.cpp copasi/elementaryFluxModes/CEFMMethod.cpp.new + mv copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + touch -r copasi/elementaryFluxModes/CEFMProblem.cpp copasi/elementaryFluxModes/CEFMProblem.cpp.new + mv copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + touch -r copasi/elementaryFluxModes/CEFMTask.cpp copasi/elementaryFluxModes/CEFMTask.cpp.new + mv copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + touch -r copasi/elementaryFluxModes/CFluxMode.cpp copasi/elementaryFluxModes/CFluxMode.cpp.new + mv copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + touch -r copasi/elementaryFluxModes/CFluxScore.cpp copasi/elementaryFluxModes/CFluxScore.cpp.new + mv copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + touch -r copasi/elementaryFluxModes/CSSAMethod.cpp copasi/elementaryFluxModes/CSSAMethod.cpp.new + mv copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + touch -r copasi/elementaryFluxModes/CStepMatrix.cpp copasi/elementaryFluxModes/CStepMatrix.cpp.new + mv copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + touch -r copasi/elementaryFluxModes/CStepMatrixColumn.cpp copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new + mv copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + touch -r copasi/elementaryFluxModes/CTableauLine.cpp copasi/elementaryFluxModes/CTableauLine.cpp.new + mv copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + touch -r copasi/elementaryFluxModes/CTableauMatrix.cpp copasi/elementaryFluxModes/CTableauMatrix.cpp.new + mv copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + touch -r copasi/elementaryFluxModes/CZeroSet.cpp copasi/elementaryFluxModes/CZeroSet.cpp.new + mv copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + touch -r copasi/function/CCallParameters.cpp copasi/function/CCallParameters.cpp.new + mv copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + touch -r copasi/function/CDerive.cpp copasi/function/CDerive.cpp.new + mv copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + touch -r copasi/function/CEvaluationLexer_lex.cpp copasi/function/CEvaluationLexer_lex.cpp.new + mv copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + touch -r copasi/function/CEvaluationNode.cpp copasi/function/CEvaluationNode.cpp.new + mv copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + touch -r copasi/function/CEvaluationNodeCall.cpp copasi/function/CEvaluationNodeCall.cpp.new + mv copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + touch -r copasi/function/CEvaluationNodeChoice.cpp copasi/function/CEvaluationNodeChoice.cpp.new + mv copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + touch -r copasi/function/CEvaluationNodeConstant.cpp copasi/function/CEvaluationNodeConstant.cpp.new + mv copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + touch -r copasi/function/CEvaluationNodeDelay.cpp copasi/function/CEvaluationNodeDelay.cpp.new + mv copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + touch -r copasi/function/CEvaluationNodeFunction.cpp copasi/function/CEvaluationNodeFunction.cpp.new + mv copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + touch -r copasi/function/CEvaluationNodeLogical.cpp copasi/function/CEvaluationNodeLogical.cpp.new + mv copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + touch -r copasi/function/CEvaluationNodeNumber.cpp copasi/function/CEvaluationNodeNumber.cpp.new + mv copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + touch -r copasi/function/CEvaluationNodeObject.cpp copasi/function/CEvaluationNodeObject.cpp.new + mv copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + touch -r copasi/function/CEvaluationNodeOperator.cpp copasi/function/CEvaluationNodeOperator.cpp.new + mv copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + touch -r copasi/function/CEvaluationNodeStructure.cpp copasi/function/CEvaluationNodeStructure.cpp.new + mv copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + touch -r copasi/function/CEvaluationNodeUnit.cpp copasi/function/CEvaluationNodeUnit.cpp.new + mv copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + touch -r copasi/function/CEvaluationNodeVariable.cpp copasi/function/CEvaluationNodeVariable.cpp.new + mv copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + touch -r copasi/function/CEvaluationNodeVector.cpp copasi/function/CEvaluationNodeVector.cpp.new + mv copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + touch -r copasi/function/CEvaluationNodeWhiteSpace.cpp copasi/function/CEvaluationNodeWhiteSpace.cpp.new + mv copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + touch -r copasi/function/CEvaluationParser_yacc.cpp copasi/function/CEvaluationParser_yacc.cpp.new + mv copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + touch -r copasi/function/CEvaluationTree.cpp copasi/function/CEvaluationTree.cpp.new + mv copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + touch -r copasi/function/CExpression.cpp copasi/function/CExpression.cpp.new + mv copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + touch -r copasi/function/CFunction.cpp copasi/function/CFunction.cpp.new + mv copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + touch -r copasi/function/CFunctionAnalyzer.cpp copasi/function/CFunctionAnalyzer.cpp.new + mv copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + touch -r copasi/function/CFunctionDB.cpp copasi/function/CFunctionDB.cpp.new + mv copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + touch -r copasi/function/CFunctionParameter.cpp copasi/function/CFunctionParameter.cpp.new + mv copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + touch -r copasi/function/CFunctionParameters.cpp copasi/function/CFunctionParameters.cpp.new + mv copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + touch -r copasi/function/CKinFunction.cpp copasi/function/CKinFunction.cpp.new + mv copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + touch -r copasi/function/CMassAction.cpp copasi/function/CMassAction.cpp.new + mv copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + touch -r copasi/function/CNodeK.cpp copasi/function/CNodeK.cpp.new + mv copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/FunctionDB.xml.cpp.new copasi/function/FunctionDB.xml.cpp + touch -r copasi/function/FunctionDB.xml.cpp copasi/function/FunctionDB.xml.cpp.new + mv copasi/function/FunctionDB.xml.cpp.new copasi/function/FunctionDB.xml.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + touch -r copasi/layout/CAbstractLayoutInterface.cpp copasi/layout/CAbstractLayoutInterface.cpp.new + mv copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + touch -r copasi/layout/CCopasiSpringLayout.cpp copasi/layout/CCopasiSpringLayout.cpp.new + mv copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + touch -r copasi/layout/CLBase.cpp copasi/layout/CLBase.cpp.new + mv copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + touch -r copasi/layout/CLColorDefinition.cpp copasi/layout/CLColorDefinition.cpp.new + mv copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + touch -r copasi/layout/CLCurve.cpp copasi/layout/CLCurve.cpp.new + mv copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + touch -r copasi/layout/CLDefaultStyles.cpp copasi/layout/CLDefaultStyles.cpp.new + mv copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + touch -r copasi/layout/CLEllipse.cpp copasi/layout/CLEllipse.cpp.new + mv copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + touch -r copasi/layout/CLGlobalRenderInformation.cpp copasi/layout/CLGlobalRenderInformation.cpp.new + mv copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + touch -r copasi/layout/CLGlobalStyle.cpp copasi/layout/CLGlobalStyle.cpp.new + mv copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + touch -r copasi/layout/CLGlyphs.cpp copasi/layout/CLGlyphs.cpp.new + mv copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + touch -r copasi/layout/CLGradientBase.cpp copasi/layout/CLGradientBase.cpp.new + mv copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + touch -r copasi/layout/CLGradientStop.cpp copasi/layout/CLGradientStop.cpp.new + mv copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + touch -r copasi/layout/CLGradientStops.cpp copasi/layout/CLGradientStops.cpp.new + mv copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + touch -r copasi/layout/CLGraphicalObject.cpp copasi/layout/CLGraphicalObject.cpp.new + mv copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + touch -r copasi/layout/CLGraphicalPrimitive1D.cpp copasi/layout/CLGraphicalPrimitive1D.cpp.new + mv copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + touch -r copasi/layout/CLGraphicalPrimitive2D.cpp copasi/layout/CLGraphicalPrimitive2D.cpp.new + mv copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + touch -r copasi/layout/CLGroup.cpp copasi/layout/CLGroup.cpp.new + mv copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + touch -r copasi/layout/CLImage.cpp copasi/layout/CLImage.cpp.new + mv copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + touch -r copasi/layout/CLImageTexturizer.cpp copasi/layout/CLImageTexturizer.cpp.new + mv copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + touch -r copasi/layout/CLLayoutRenderer.cpp copasi/layout/CLLayoutRenderer.cpp.new + mv copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + touch -r copasi/layout/CLLineEnding.cpp copasi/layout/CLLineEnding.cpp.new + mv copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + touch -r copasi/layout/CLLinearGradient.cpp copasi/layout/CLLinearGradient.cpp.new + mv copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + touch -r copasi/layout/CLLocalRenderInformation.cpp copasi/layout/CLLocalRenderInformation.cpp.new + mv copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + touch -r copasi/layout/CLLocalStyle.cpp copasi/layout/CLLocalStyle.cpp.new + mv copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + touch -r copasi/layout/CLPolygon.cpp copasi/layout/CLPolygon.cpp.new + mv copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + touch -r copasi/layout/CLRadialGradient.cpp copasi/layout/CLRadialGradient.cpp.new + mv copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + touch -r copasi/layout/CLReactionGlyph.cpp copasi/layout/CLReactionGlyph.cpp.new + mv copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + touch -r copasi/layout/CLRectangle.cpp copasi/layout/CLRectangle.cpp.new + mv copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + touch -r copasi/layout/CLRelAbsVector.cpp copasi/layout/CLRelAbsVector.cpp.new + mv copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + touch -r copasi/layout/CLRenderCubicBezier.cpp copasi/layout/CLRenderCubicBezier.cpp.new + mv copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + touch -r copasi/layout/CLRenderCurve.cpp copasi/layout/CLRenderCurve.cpp.new + mv copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + touch -r copasi/layout/CLRenderFlattener.cpp copasi/layout/CLRenderFlattener.cpp.new + mv copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + touch -r copasi/layout/CLRenderInformationBase.cpp copasi/layout/CLRenderInformationBase.cpp.new + mv copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + touch -r copasi/layout/CLRenderPoint.cpp copasi/layout/CLRenderPoint.cpp.new + mv copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + touch -r copasi/layout/CLRenderResolver.cpp copasi/layout/CLRenderResolver.cpp.new + mv copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + touch -r copasi/layout/CLSimpleImageTexturizer.cpp copasi/layout/CLSimpleImageTexturizer.cpp.new + mv copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + touch -r copasi/layout/CLStyle.cpp copasi/layout/CLStyle.cpp.new + mv copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + touch -r copasi/layout/CLText.cpp copasi/layout/CLText.cpp.new + mv copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + touch -r copasi/layout/CLTransformation.cpp copasi/layout/CLTransformation.cpp.new + mv copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + touch -r copasi/layout/CLTransformation2D.cpp copasi/layout/CLTransformation2D.cpp.new + mv copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + touch -r copasi/layout/CLUnresolvedReferenceException.cpp copasi/layout/CLUnresolvedReferenceException.cpp.new + mv copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + touch -r copasi/layout/CLayout.cpp copasi/layout/CLayout.cpp.new + mv copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + touch -r copasi/layout/CLayoutEngine.cpp copasi/layout/CLayoutEngine.cpp.new + mv copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + touch -r copasi/layout/CLayoutInitializer.cpp copasi/layout/CLayoutInitializer.cpp.new + mv copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + touch -r copasi/layout/CLayoutState.cpp copasi/layout/CLayoutState.cpp.new + mv copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + touch -r copasi/layout/CListOfLayouts.cpp copasi/layout/CListOfLayouts.cpp.new + mv copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + touch -r copasi/layout/SBMLDocumentLoader.cpp copasi/layout/SBMLDocumentLoader.cpp.new + mv copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + touch -r copasi/layout/utility_classes.cpp copasi/layout/utility_classes.cpp.new + mv copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + touch -r copasi/layoutUI/BezierCurve.cpp copasi/layoutUI/BezierCurve.cpp.new + mv copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + touch -r copasi/layoutUI/CArrow.cpp copasi/layoutUI/CArrow.cpp.new + mv copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + touch -r copasi/layoutUI/CCompartmentGraphNode.cpp copasi/layoutUI/CCompartmentGraphNode.cpp.new + mv copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + touch -r copasi/layoutUI/CDataEntity.cpp copasi/layoutUI/CDataEntity.cpp.new + mv copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + touch -r copasi/layoutUI/CGraphCurve.cpp copasi/layoutUI/CGraphCurve.cpp.new + mv copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + touch -r copasi/layoutUI/CGraphNode.cpp copasi/layoutUI/CGraphNode.cpp.new + mv copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + touch -r copasi/layoutUI/CLabel.cpp copasi/layoutUI/CLabel.cpp.new + mv copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + touch -r copasi/layoutUI/CQAutolayoutWizard.cpp copasi/layoutUI/CQAutolayoutWizard.cpp.new + mv copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + touch -r copasi/layoutUI/CQCurrentValueTable.cpp copasi/layoutUI/CQCurrentValueTable.cpp.new + mv copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + touch -r copasi/layoutUI/CQFontRenderer.cpp copasi/layoutUI/CQFontRenderer.cpp.new + mv copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + touch -r copasi/layoutUI/CQGLLayoutPainter.cpp copasi/layoutUI/CQGLLayoutPainter.cpp.new + mv copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + touch -r copasi/layoutUI/CQGLLayoutViewer.cpp copasi/layoutUI/CQGLLayoutViewer.cpp.new + mv copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + touch -r copasi/layoutUI/CQGLNetworkPainter.cpp copasi/layoutUI/CQGLNetworkPainter.cpp.new + mv copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + touch -r copasi/layoutUI/CQGLViewport.cpp copasi/layoutUI/CQGLViewport.cpp.new + mv copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + touch -r copasi/layoutUI/CQLayoutMainWindow.cpp copasi/layoutUI/CQLayoutMainWindow.cpp.new + mv copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + touch -r copasi/layoutUI/CQLayoutThread.cpp copasi/layoutUI/CQLayoutThread.cpp.new + mv copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + touch -r copasi/layoutUI/CQNewMainWindow.cpp copasi/layoutUI/CQNewMainWindow.cpp.new + mv copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + touch -r copasi/layoutUI/CQPlayerControlWidget.cpp copasi/layoutUI/CQPlayerControlWidget.cpp.new + mv copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + touch -r copasi/layoutUI/CQQtImageTexturizer.cpp copasi/layoutUI/CQQtImageTexturizer.cpp.new + mv copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + touch -r copasi/layoutUI/CQScreenshotOptionsDialog.cpp copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new + mv copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + touch -r copasi/layoutUI/CQSpringLayoutParameterWindow.cpp copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new + mv copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + touch -r copasi/layoutUI/CSimSummaryInfo.cpp copasi/layoutUI/CSimSummaryInfo.cpp.new + mv copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + touch -r copasi/layoutUI/CVisParameters.cpp copasi/layoutUI/CVisParameters.cpp.new + mv copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + touch -r copasi/layoutUI/FontChooser.cpp copasi/layoutUI/FontChooser.cpp.new + mv copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + touch -r copasi/layoutUI/NodeSizePanel.cpp copasi/layoutUI/NodeSizePanel.cpp.new + mv copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + touch -r copasi/layoutUI/ParaPanel.cpp copasi/layoutUI/ParaPanel.cpp.new + mv copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + touch -r copasi/layoutUI/RGTextureSpec.cpp copasi/layoutUI/RGTextureSpec.cpp.new + mv copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + touch -r copasi/lna/CLNAMethod.cpp copasi/lna/CLNAMethod.cpp.new + mv copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + touch -r copasi/lna/CLNAProblem.cpp copasi/lna/CLNAProblem.cpp.new + mv copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + touch -r copasi/lna/CLNATask.cpp copasi/lna/CLNATask.cpp.new + mv copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + touch -r copasi/lyap/CLyapMethod.cpp copasi/lyap/CLyapMethod.cpp.new + mv copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + touch -r copasi/lyap/CLyapProblem.cpp copasi/lyap/CLyapProblem.cpp.new + mv copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + touch -r copasi/lyap/CLyapTask.cpp copasi/lyap/CLyapTask.cpp.new + mv copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + touch -r copasi/lyap/CLyapWolfMethod.cpp copasi/lyap/CLyapWolfMethod.cpp.new + mv copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitCompiler.cpp.new copasi/math/CJitCompiler.cpp + touch -r copasi/math/CJitCompiler.cpp copasi/math/CJitCompiler.cpp.new + mv copasi/math/CJitCompiler.cpp.new copasi/math/CJitCompiler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitCompilerImplementation.cpp.new copasi/math/CJitCompilerImplementation.cpp + touch -r copasi/math/CJitCompilerImplementation.cpp copasi/math/CJitCompilerImplementation.cpp.new + mv copasi/math/CJitCompilerImplementation.cpp.new copasi/math/CJitCompilerImplementation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitExpression.cpp.new copasi/math/CJitExpression.cpp + touch -r copasi/math/CJitExpression.cpp copasi/math/CJitExpression.cpp.new + mv copasi/math/CJitExpression.cpp.new copasi/math/CJitExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + touch -r copasi/math/CMathContainer.cpp copasi/math/CMathContainer.cpp.new + mv copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + touch -r copasi/math/CMathDelay.cpp copasi/math/CMathDelay.cpp.new + mv copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + touch -r copasi/math/CMathDependencyGraph.cpp copasi/math/CMathDependencyGraph.cpp.new + mv copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + touch -r copasi/math/CMathDependencyNode.cpp copasi/math/CMathDependencyNode.cpp.new + mv copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + touch -r copasi/math/CMathDependencyNodeIterator.cpp copasi/math/CMathDependencyNodeIterator.cpp.new + mv copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDerive.cpp.new copasi/math/CMathDerive.cpp + touch -r copasi/math/CMathDerive.cpp copasi/math/CMathDerive.cpp.new + mv copasi/math/CMathDerive.cpp.new copasi/math/CMathDerive.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + touch -r copasi/math/CMathEnum.cpp copasi/math/CMathEnum.cpp.new + mv copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + touch -r copasi/math/CMathEvent.cpp copasi/math/CMathEvent.cpp.new + mv copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + touch -r copasi/math/CMathEventQueue.cpp copasi/math/CMathEventQueue.cpp.new + mv copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + touch -r copasi/math/CMathExpression.cpp copasi/math/CMathExpression.cpp.new + mv copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + touch -r copasi/math/CMathHistory.cpp copasi/math/CMathHistory.cpp.new + mv copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + touch -r copasi/math/CMathObject.cpp copasi/math/CMathObject.cpp.new + mv copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + touch -r copasi/math/CMathReaction.cpp copasi/math/CMathReaction.cpp.new + mv copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + touch -r copasi/math/CMathUpdateSequence.cpp copasi/math/CMathUpdateSequence.cpp.new + mv copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + touch -r copasi/miase/CMiaseBase.cpp copasi/miase/CMiaseBase.cpp.new + mv copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + touch -r copasi/miase/CMiaseML.cpp copasi/miase/CMiaseML.cpp.new + mv copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + touch -r copasi/miase/CMiaseModel.cpp copasi/miase/CMiaseModel.cpp.new + mv copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + touch -r copasi/miase/CMiaseOutput.cpp copasi/miase/CMiaseOutput.cpp.new + mv copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + touch -r copasi/miase/CMiaseParser.cpp copasi/miase/CMiaseParser.cpp.new + mv copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + touch -r copasi/miase/CMiaseSimulation.cpp copasi/miase/CMiaseSimulation.cpp.new + mv copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + touch -r copasi/miase/CMiaseTask.cpp copasi/miase/CMiaseTask.cpp.new + mv copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + touch -r copasi/model/CAnnotation.cpp copasi/model/CAnnotation.cpp.new + mv copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + touch -r copasi/model/CChemEq.cpp copasi/model/CChemEq.cpp.new + mv copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + touch -r copasi/model/CChemEqElement.cpp copasi/model/CChemEqElement.cpp.new + mv copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + touch -r copasi/model/CChemEqInterface.cpp copasi/model/CChemEqInterface.cpp.new + mv copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + touch -r copasi/model/CChemEqParser.cpp copasi/model/CChemEqParser.cpp.new + mv copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + touch -r copasi/model/CChemEqParser_lex.cpp copasi/model/CChemEqParser_lex.cpp.new + mv copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + touch -r copasi/model/CChemEqParser_yacc.cpp copasi/model/CChemEqParser_yacc.cpp.new + mv copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + touch -r copasi/model/CCompartment.cpp copasi/model/CCompartment.cpp.new + mv copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + touch -r copasi/model/CEvent.cpp copasi/model/CEvent.cpp.new + mv copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + touch -r copasi/model/CMMLOutput.cpp copasi/model/CMMLOutput.cpp.new + mv copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + touch -r copasi/model/CMetab.cpp copasi/model/CMetab.cpp.new + mv copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + touch -r copasi/model/CMetabNameInterface.cpp copasi/model/CMetabNameInterface.cpp.new + mv copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModel.cpp.new copasi/model/CModel.cpp + touch -r copasi/model/CModel.cpp copasi/model/CModel.cpp.new + mv copasi/model/CModel.cpp.new copasi/model/CModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + touch -r copasi/model/CModelAnalyzer.cpp copasi/model/CModelAnalyzer.cpp.new + mv copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + touch -r copasi/model/CModelExpansion.cpp copasi/model/CModelExpansion.cpp.new + mv copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + touch -r copasi/model/CModelMerging.cpp copasi/model/CModelMerging.cpp.new + mv copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + touch -r copasi/model/CModelParameter.cpp copasi/model/CModelParameter.cpp.new + mv copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + touch -r copasi/model/CModelParameterGroup.cpp copasi/model/CModelParameterGroup.cpp.new + mv copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + touch -r copasi/model/CModelParameterSet.cpp copasi/model/CModelParameterSet.cpp.new + mv copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + touch -r copasi/model/CModelValue.cpp copasi/model/CModelValue.cpp.new + mv copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + touch -r copasi/model/CMoiety.cpp copasi/model/CMoiety.cpp.new + mv copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + touch -r copasi/model/CObjectLists.cpp copasi/model/CObjectLists.cpp.new + mv copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + touch -r copasi/model/CReaction.cpp copasi/model/CReaction.cpp.new + mv copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + touch -r copasi/model/CReactionInterface.cpp copasi/model/CReactionInterface.cpp.new + mv copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CState.cpp.new copasi/model/CState.cpp + touch -r copasi/model/CState.cpp copasi/model/CState.cpp.new + mv copasi/model/CState.cpp.new copasi/model/CState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + touch -r copasi/moieties/CMoietiesMethod.cpp copasi/moieties/CMoietiesMethod.cpp.new + mv copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + touch -r copasi/moieties/CMoietiesProblem.cpp copasi/moieties/CMoietiesProblem.cpp.new + mv copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + touch -r copasi/moieties/CMoietiesTask.cpp copasi/moieties/CMoietiesTask.cpp.new + mv copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + touch -r copasi/odepack++/CInternalSolver.cpp copasi/odepack++/CInternalSolver.cpp.new + mv copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + touch -r copasi/odepack++/CLSODA.cpp copasi/odepack++/CLSODA.cpp.new + mv copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + touch -r copasi/odepack++/CLSODAR.cpp copasi/odepack++/CLSODAR.cpp.new + mv copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CRadau5.cpp.new copasi/odepack++/CRadau5.cpp + touch -r copasi/odepack++/CRadau5.cpp copasi/odepack++/CRadau5.cpp.new + mv copasi/odepack++/CRadau5.cpp.new copasi/odepack++/CRadau5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + touch -r copasi/odepack++/Cxerrwd.cpp copasi/odepack++/Cxerrwd.cpp.new + mv copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + touch -r copasi/odepack++/common.cpp copasi/odepack++/common.cpp.new + mv copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + touch -r copasi/odepack++/dbnorm.cpp copasi/odepack++/dbnorm.cpp.new + mv copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dc_decsol.cpp.new copasi/odepack++/dc_decsol.cpp + touch -r copasi/odepack++/dc_decsol.cpp copasi/odepack++/dc_decsol.cpp.new + mv copasi/odepack++/dc_decsol.cpp.new copasi/odepack++/dc_decsol.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + touch -r copasi/odepack++/dcfode.cpp copasi/odepack++/dcfode.cpp.new + mv copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/decsol.cpp.new copasi/odepack++/decsol.cpp + touch -r copasi/odepack++/decsol.cpp copasi/odepack++/decsol.cpp.new + mv copasi/odepack++/decsol.cpp.new copasi/odepack++/decsol.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + touch -r copasi/odepack++/dewset.cpp copasi/odepack++/dewset.cpp.new + mv copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + touch -r copasi/odepack++/dfnorm.cpp copasi/odepack++/dfnorm.cpp.new + mv copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + touch -r copasi/odepack++/dintdy.cpp copasi/odepack++/dintdy.cpp.new + mv copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + touch -r copasi/odepack++/dmnorm.cpp copasi/odepack++/dmnorm.cpp.new + mv copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + touch -r copasi/odepack++/dprja.cpp copasi/odepack++/dprja.cpp.new + mv copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + touch -r copasi/odepack++/drcheck.cpp copasi/odepack++/drcheck.cpp.new + mv copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + touch -r copasi/odepack++/dsolsy.cpp copasi/odepack++/dsolsy.cpp.new + mv copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + touch -r copasi/odepack++/dstoda.cpp copasi/odepack++/dstoda.cpp.new + mv copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CNL2SOL.cpp.new copasi/optimization/CNL2SOL.cpp + touch -r copasi/optimization/CNL2SOL.cpp copasi/optimization/CNL2SOL.cpp.new + mv copasi/optimization/CNL2SOL.cpp.new copasi/optimization/CNL2SOL.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + touch -r copasi/optimization/COptItem.cpp copasi/optimization/COptItem.cpp.new + mv copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + touch -r copasi/optimization/COptLog.cpp copasi/optimization/COptLog.cpp.new + mv copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLogEntry.cpp.new copasi/optimization/COptLogEntry.cpp + touch -r copasi/optimization/COptLogEntry.cpp copasi/optimization/COptLogEntry.cpp.new + mv copasi/optimization/COptLogEntry.cpp.new copasi/optimization/COptLogEntry.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + touch -r copasi/optimization/COptLogItem.cpp copasi/optimization/COptLogItem.cpp.new + mv copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + touch -r copasi/optimization/COptMethod.cpp copasi/optimization/COptMethod.cpp.new + mv copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + touch -r copasi/optimization/COptMethodCoranaWalk.cpp copasi/optimization/COptMethodCoranaWalk.cpp.new + mv copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + touch -r copasi/optimization/COptMethodDE.cpp copasi/optimization/COptMethodDE.cpp.new + mv copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + touch -r copasi/optimization/COptMethodEP.cpp copasi/optimization/COptMethodEP.cpp.new + mv copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + touch -r copasi/optimization/COptMethodGA.cpp copasi/optimization/COptMethodGA.cpp.new + mv copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + touch -r copasi/optimization/COptMethodGASR.cpp copasi/optimization/COptMethodGASR.cpp.new + mv copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + touch -r copasi/optimization/COptMethodHookeJeeves.cpp copasi/optimization/COptMethodHookeJeeves.cpp.new + mv copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + touch -r copasi/optimization/COptMethodLevenbergMarquardt.cpp copasi/optimization/COptMethodLevenbergMarquardt.cpp.new + mv copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodNL2SOL.cpp.new copasi/optimization/COptMethodNL2SOL.cpp + touch -r copasi/optimization/COptMethodNL2SOL.cpp copasi/optimization/COptMethodNL2SOL.cpp.new + mv copasi/optimization/COptMethodNL2SOL.cpp.new copasi/optimization/COptMethodNL2SOL.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + touch -r copasi/optimization/COptMethodNelderMead.cpp copasi/optimization/COptMethodNelderMead.cpp.new + mv copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + touch -r copasi/optimization/COptMethodPS.cpp copasi/optimization/COptMethodPS.cpp.new + mv copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + touch -r copasi/optimization/COptMethodPraxis.cpp copasi/optimization/COptMethodPraxis.cpp.new + mv copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + touch -r copasi/optimization/COptMethodSA.cpp copasi/optimization/COptMethodSA.cpp.new + mv copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + touch -r copasi/optimization/COptMethodSRES.cpp copasi/optimization/COptMethodSRES.cpp.new + mv copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + touch -r copasi/optimization/COptMethodSS.cpp copasi/optimization/COptMethodSS.cpp.new + mv copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + touch -r copasi/optimization/COptMethodStatistics.cpp copasi/optimization/COptMethodStatistics.cpp.new + mv copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + touch -r copasi/optimization/COptMethodSteepestDescent.cpp copasi/optimization/COptMethodSteepestDescent.cpp.new + mv copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + touch -r copasi/optimization/COptMethodTruncatedNewton.cpp copasi/optimization/COptMethodTruncatedNewton.cpp.new + mv copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + touch -r copasi/optimization/COptPopulationMethod.cpp copasi/optimization/COptPopulationMethod.cpp.new + mv copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + touch -r copasi/optimization/COptProblem.cpp copasi/optimization/COptProblem.cpp.new + mv copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + touch -r copasi/optimization/COptTask.cpp copasi/optimization/COptTask.cpp.new + mv copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + touch -r copasi/optimization/CPraxis.cpp copasi/optimization/CPraxis.cpp.new + mv copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + touch -r copasi/optimization/CRandomSearch.cpp copasi/optimization/CRandomSearch.cpp.new + mv copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + touch -r copasi/optimization/CRealProblem.cpp copasi/optimization/CRealProblem.cpp.new + mv copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + touch -r copasi/optimization/CTruncatedNewton.cpp copasi/optimization/CTruncatedNewton.cpp.new + mv copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + touch -r copasi/oscillation/COscillationMethod.cpp copasi/oscillation/COscillationMethod.cpp.new + mv copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + touch -r copasi/oscillation/COscillationMethodIntegrate.cpp copasi/oscillation/COscillationMethodIntegrate.cpp.new + mv copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + touch -r copasi/oscillation/COscillationProblem.cpp copasi/oscillation/COscillationProblem.cpp.new + mv copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + touch -r copasi/oscillation/COscillationTask.cpp copasi/oscillation/COscillationTask.cpp.new + mv copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + touch -r copasi/output/COutputHandler.cpp copasi/output/COutputHandler.cpp.new + mv copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + touch -r copasi/parameterFitting/CExperiment.cpp copasi/parameterFitting/CExperiment.cpp.new + mv copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + touch -r copasi/parameterFitting/CExperimentFileInfo.cpp copasi/parameterFitting/CExperimentFileInfo.cpp.new + mv copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + touch -r copasi/parameterFitting/CExperimentObjectMap.cpp copasi/parameterFitting/CExperimentObjectMap.cpp.new + mv copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + touch -r copasi/parameterFitting/CExperimentSet.cpp copasi/parameterFitting/CExperimentSet.cpp.new + mv copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + touch -r copasi/parameterFitting/CFitItem.cpp copasi/parameterFitting/CFitItem.cpp.new + mv copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + touch -r copasi/parameterFitting/CFitProblem.cpp copasi/parameterFitting/CFitProblem.cpp.new + mv copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + touch -r copasi/parameterFitting/CFitTask.cpp copasi/parameterFitting/CFitTask.cpp.new + mv copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + touch -r copasi/plot/COutputDefinitionVector.cpp copasi/plot/COutputDefinitionVector.cpp.new + mv copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + touch -r copasi/plot/CPlotColors.cpp copasi/plot/CPlotColors.cpp.new + mv copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + touch -r copasi/plot/CPlotItem.cpp copasi/plot/CPlotItem.cpp.new + mv copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + touch -r copasi/plot/CPlotSpecification.cpp copasi/plot/CPlotSpecification.cpp.new + mv copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + touch -r copasi/plotUI/BandedGraphWidget.cpp copasi/plotUI/BandedGraphWidget.cpp.new + mv copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + touch -r copasi/plotUI/C2DCurveData.cpp copasi/plotUI/C2DCurveData.cpp.new + mv copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + touch -r copasi/plotUI/C2DPlotCurve.cpp copasi/plotUI/C2DPlotCurve.cpp.new + mv copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + touch -r copasi/plotUI/CBandedGraphData.cpp copasi/plotUI/CBandedGraphData.cpp.new + mv copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + touch -r copasi/plotUI/CHistoCurveData.cpp copasi/plotUI/CHistoCurveData.cpp.new + mv copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + touch -r copasi/plotUI/CLinearColorMap.cpp copasi/plotUI/CLinearColorMap.cpp.new + mv copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + touch -r copasi/plotUI/COutputHandlerPlot.cpp copasi/plotUI/COutputHandlerPlot.cpp.new + mv copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CPlotInterface.cpp.new copasi/plotUI/CPlotInterface.cpp + touch -r copasi/plotUI/CPlotInterface.cpp copasi/plotUI/CPlotInterface.cpp.new + mv copasi/plotUI/CPlotInterface.cpp.new copasi/plotUI/CPlotInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + touch -r copasi/plotUI/CPlotSpectogram.cpp copasi/plotUI/CPlotSpectogram.cpp.new + mv copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQAdvancedPlotSettings.cpp.new copasi/plotUI/CQAdvancedPlotSettings.cpp + touch -r copasi/plotUI/CQAdvancedPlotSettings.cpp copasi/plotUI/CQAdvancedPlotSettings.cpp.new + mv copasi/plotUI/CQAdvancedPlotSettings.cpp.new copasi/plotUI/CQAdvancedPlotSettings.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQCustomPlot.cpp.new copasi/plotUI/CQCustomPlot.cpp + touch -r copasi/plotUI/CQCustomPlot.cpp copasi/plotUI/CQCustomPlot.cpp.new + mv copasi/plotUI/CQCustomPlot.cpp.new copasi/plotUI/CQCustomPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQDataVizPlot.cpp.new copasi/plotUI/CQDataVizPlot.cpp + touch -r copasi/plotUI/CQDataVizPlot.cpp copasi/plotUI/CQDataVizPlot.cpp.new + mv copasi/plotUI/CQDataVizPlot.cpp.new copasi/plotUI/CQDataVizPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQExtender.cpp.new copasi/plotUI/CQExtender.cpp + touch -r copasi/plotUI/CQExtender.cpp copasi/plotUI/CQExtender.cpp.new + mv copasi/plotUI/CQExtender.cpp.new copasi/plotUI/CQExtender.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQMarchingSquares.cpp.new copasi/plotUI/CQMarchingSquares.cpp + touch -r copasi/plotUI/CQMarchingSquares.cpp copasi/plotUI/CQMarchingSquares.cpp.new + mv copasi/plotUI/CQMarchingSquares.cpp.new copasi/plotUI/CQMarchingSquares.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + touch -r copasi/plotUI/CQPlotColors.cpp copasi/plotUI/CQPlotColors.cpp.new + mv copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + touch -r copasi/plotUI/CQPlotEditWidget.cpp copasi/plotUI/CQPlotEditWidget.cpp.new + mv copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + touch -r copasi/plotUI/CQPlotSubwidget.cpp copasi/plotUI/CQPlotSubwidget.cpp.new + mv copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + touch -r copasi/plotUI/CQSpectogramWidget.cpp copasi/plotUI/CQSpectogramWidget.cpp.new + mv copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQtChartsPlot.cpp.new copasi/plotUI/CQtChartsPlot.cpp + touch -r copasi/plotUI/CQtChartsPlot.cpp copasi/plotUI/CQtChartsPlot.cpp.new + mv copasi/plotUI/CQtChartsPlot.cpp.new copasi/plotUI/CQtChartsPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQwtPlot.cpp.new copasi/plotUI/CQwtPlot.cpp + touch -r copasi/plotUI/CQwtPlot.cpp copasi/plotUI/CQwtPlot.cpp.new + mv copasi/plotUI/CQwtPlot.cpp.new copasi/plotUI/CQwtPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + touch -r copasi/plotUI/CSpectorgramData.cpp copasi/plotUI/CSpectorgramData.cpp.new + mv copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + touch -r copasi/plotUI/HistoWidget.cpp copasi/plotUI/HistoWidget.cpp.new + mv copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + touch -r copasi/plotUI/curve2dwidget.cpp copasi/plotUI/curve2dwidget.cpp.new + mv copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + touch -r copasi/plotUI/plotwindow.cpp copasi/plotUI/plotwindow.cpp.new + mv copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + touch -r copasi/plotUI/scrollbar.cpp copasi/plotUI/scrollbar.cpp.new + mv copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + touch -r copasi/plotUI/scrollzoomer.cpp copasi/plotUI/scrollzoomer.cpp.new + mv copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + touch -r copasi/pvmtest/pvmtest.cpp copasi/pvmtest/pvmtest.cpp.new + mv copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + touch -r copasi/qlayout/CQAnimationControls.cpp copasi/qlayout/CQAnimationControls.cpp.new + mv copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + touch -r copasi/qlayout/CQAnimationSettingsEditor.cpp copasi/qlayout/CQAnimationSettingsEditor.cpp.new + mv copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + touch -r copasi/qlayout/CQAnimationWindow.cpp copasi/qlayout/CQAnimationWindow.cpp.new + mv copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + touch -r copasi/qlayout/CQConnectionGraphicsItem.cpp copasi/qlayout/CQConnectionGraphicsItem.cpp.new + mv copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + touch -r copasi/qlayout/CQCopasiAnimation.cpp copasi/qlayout/CQCopasiAnimation.cpp.new + mv copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + touch -r copasi/qlayout/CQCopasiEffect.cpp copasi/qlayout/CQCopasiEffect.cpp.new + mv copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + touch -r copasi/qlayout/CQCopasiGraphicsItem.cpp copasi/qlayout/CQCopasiGraphicsItem.cpp.new + mv copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + touch -r copasi/qlayout/CQEffectDescription.cpp copasi/qlayout/CQEffectDescription.cpp.new + mv copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + touch -r copasi/qlayout/CQEffectDescriptionEdit.cpp copasi/qlayout/CQEffectDescriptionEdit.cpp.new + mv copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQElementProperties.cpp.new copasi/qlayout/CQElementProperties.cpp + touch -r copasi/qlayout/CQElementProperties.cpp copasi/qlayout/CQElementProperties.cpp.new + mv copasi/qlayout/CQElementProperties.cpp.new copasi/qlayout/CQElementProperties.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + touch -r copasi/qlayout/CQLabelGraphicsItem.cpp copasi/qlayout/CQLabelGraphicsItem.cpp.new + mv copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + touch -r copasi/qlayout/CQLayoutScene.cpp copasi/qlayout/CQLayoutScene.cpp.new + mv copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + touch -r copasi/qlayout/CQLayoutView.cpp copasi/qlayout/CQLayoutView.cpp.new + mv copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + touch -r copasi/qlayout/CQRenderConverter.cpp copasi/qlayout/CQRenderConverter.cpp.new + mv copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + touch -r copasi/qlayout/CQRoundedRect.cpp copasi/qlayout/CQRoundedRect.cpp.new + mv copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + touch -r copasi/qlayout/CQStyledGraphicsItem.cpp copasi/qlayout/CQStyledGraphicsItem.cpp.new + mv copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + touch -r copasi/qlayout/CQZoomableView.cpp copasi/qlayout/CQZoomableView.cpp.new + mv copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + touch -r copasi/randomGenerator/CPermutation.cpp copasi/randomGenerator/CPermutation.cpp.new + mv copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + touch -r copasi/randomGenerator/CRandom.cpp copasi/randomGenerator/CRandom.cpp.new + mv copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + touch -r copasi/randomGenerator/Cmt19937.cpp copasi/randomGenerator/Cmt19937.cpp.new + mv copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + touch -r copasi/randomGenerator/Cr250.cpp copasi/randomGenerator/Cr250.cpp.new + mv copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CDataHandler.cpp.new copasi/report/CDataHandler.cpp + touch -r copasi/report/CDataHandler.cpp copasi/report/CDataHandler.cpp.new + mv copasi/report/CDataHandler.cpp.new copasi/report/CDataHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + touch -r copasi/report/CKeyFactory.cpp copasi/report/CKeyFactory.cpp.new + mv copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + touch -r copasi/report/COutputAssistant.cpp copasi/report/COutputAssistant.cpp.new + mv copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReport.cpp.new copasi/report/CReport.cpp + touch -r copasi/report/CReport.cpp copasi/report/CReport.cpp.new + mv copasi/report/CReport.cpp.new copasi/report/CReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + touch -r copasi/report/CReportBody.cpp copasi/report/CReportBody.cpp.new + mv copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + touch -r copasi/report/CReportDefinition.cpp copasi/report/CReportDefinition.cpp.new + mv copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + touch -r copasi/report/CReportDefinitionVector.cpp copasi/report/CReportDefinitionVector.cpp.new + mv copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + touch -r copasi/resourcesUI/CQIconResource.cpp copasi/resourcesUI/CQIconResource.cpp.new + mv copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + touch -r copasi/sbml/CCellDesignerImporter.cpp copasi/sbml/CCellDesignerImporter.cpp.new + mv copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + touch -r copasi/sbml/CSBMLExporter.cpp copasi/sbml/CSBMLExporter.cpp.new + mv copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + touch -r copasi/sbml/ConverterASTNode.cpp copasi/sbml/ConverterASTNode.cpp.new + mv copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + touch -r copasi/sbml/SBMLImporter.cpp copasi/sbml/SBMLImporter.cpp.new + mv copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + touch -r copasi/sbml/SBMLIncompatibility.cpp copasi/sbml/SBMLIncompatibility.cpp.new + mv copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + touch -r copasi/sbml/SBMLReference.cpp copasi/sbml/SBMLReference.cpp.new + mv copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLUnitSupport.cpp.new copasi/sbml/SBMLUnitSupport.cpp + touch -r copasi/sbml/SBMLUnitSupport.cpp copasi/sbml/SBMLUnitSupport.cpp.new + mv copasi/sbml/SBMLUnitSupport.cpp.new copasi/sbml/SBMLUnitSupport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + touch -r copasi/sbml/SBMLUtils.cpp copasi/sbml/SBMLUtils.cpp.new + mv copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + touch -r copasi/sbml/StdException.cpp copasi/sbml/StdException.cpp.new + mv copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + touch -r copasi/sbml/unittests/test.cpp copasi/sbml/unittests/test.cpp.new + mv copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + touch -r copasi/sbml/unittests/test000001.cpp copasi/sbml/unittests/test000001.cpp.new + mv copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + touch -r copasi/sbml/unittests/test000002.cpp copasi/sbml/unittests/test000002.cpp.new + mv copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + touch -r copasi/sbml/unittests/test000003.cpp copasi/sbml/unittests/test000003.cpp.new + mv copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + touch -r copasi/sbml/unittests/test000004.cpp copasi/sbml/unittests/test000004.cpp.new + mv copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + touch -r copasi/sbml/unittests/test000005.cpp copasi/sbml/unittests/test000005.cpp.new + mv copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + touch -r copasi/sbml/unittests/test000006.cpp copasi/sbml/unittests/test000006.cpp.new + mv copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + touch -r copasi/sbml/unittests/test000007.cpp copasi/sbml/unittests/test000007.cpp.new + mv copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + touch -r copasi/sbml/unittests/test000008.cpp copasi/sbml/unittests/test000008.cpp.new + mv copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + touch -r copasi/sbml/unittests/test000009.cpp copasi/sbml/unittests/test000009.cpp.new + mv copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + touch -r copasi/sbml/unittests/test000010.cpp copasi/sbml/unittests/test000010.cpp.new + mv copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + touch -r copasi/sbml/unittests/test000011.cpp copasi/sbml/unittests/test000011.cpp.new + mv copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + touch -r copasi/sbml/unittests/test000012.cpp copasi/sbml/unittests/test000012.cpp.new + mv copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + touch -r copasi/sbml/unittests/test000013.cpp copasi/sbml/unittests/test000013.cpp.new + mv copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + touch -r copasi/sbml/unittests/test000014.cpp copasi/sbml/unittests/test000014.cpp.new + mv copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + touch -r copasi/sbml/unittests/test000015.cpp copasi/sbml/unittests/test000015.cpp.new + mv copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + touch -r copasi/sbml/unittests/test000016.cpp copasi/sbml/unittests/test000016.cpp.new + mv copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + touch -r copasi/sbml/unittests/test000017.cpp copasi/sbml/unittests/test000017.cpp.new + mv copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + touch -r copasi/sbml/unittests/test000018.cpp copasi/sbml/unittests/test000018.cpp.new + mv copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + touch -r copasi/sbml/unittests/test000019.cpp copasi/sbml/unittests/test000019.cpp.new + mv copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + touch -r copasi/sbml/unittests/test000020.cpp copasi/sbml/unittests/test000020.cpp.new + mv copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + touch -r copasi/sbml/unittests/test000021.cpp copasi/sbml/unittests/test000021.cpp.new + mv copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + touch -r copasi/sbml/unittests/test000022.cpp copasi/sbml/unittests/test000022.cpp.new + mv copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + touch -r copasi/sbml/unittests/test000023.cpp copasi/sbml/unittests/test000023.cpp.new + mv copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + touch -r copasi/sbml/unittests/test000024.cpp copasi/sbml/unittests/test000024.cpp.new + mv copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + touch -r copasi/sbml/unittests/test000025.cpp copasi/sbml/unittests/test000025.cpp.new + mv copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + touch -r copasi/sbml/unittests/test000026.cpp copasi/sbml/unittests/test000026.cpp.new + mv copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + touch -r copasi/sbml/unittests/test000027.cpp copasi/sbml/unittests/test000027.cpp.new + mv copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + touch -r copasi/sbml/unittests/test000028.cpp copasi/sbml/unittests/test000028.cpp.new + mv copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + touch -r copasi/sbml/unittests/test000029.cpp copasi/sbml/unittests/test000029.cpp.new + mv copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + touch -r copasi/sbml/unittests/test000030.cpp copasi/sbml/unittests/test000030.cpp.new + mv copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + touch -r copasi/sbml/unittests/test000031.cpp copasi/sbml/unittests/test000031.cpp.new + mv copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + touch -r copasi/sbml/unittests/test000032.cpp copasi/sbml/unittests/test000032.cpp.new + mv copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + touch -r copasi/sbml/unittests/test000033.cpp copasi/sbml/unittests/test000033.cpp.new + mv copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + touch -r copasi/sbml/unittests/test000034.cpp copasi/sbml/unittests/test000034.cpp.new + mv copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + touch -r copasi/sbml/unittests/test000035.cpp copasi/sbml/unittests/test000035.cpp.new + mv copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + touch -r copasi/sbml/unittests/test000036.cpp copasi/sbml/unittests/test000036.cpp.new + mv copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + touch -r copasi/sbml/unittests/test000037.cpp copasi/sbml/unittests/test000037.cpp.new + mv copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + touch -r copasi/sbml/unittests/test000038.cpp copasi/sbml/unittests/test000038.cpp.new + mv copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + touch -r copasi/sbml/unittests/test000039.cpp copasi/sbml/unittests/test000039.cpp.new + mv copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + touch -r copasi/sbml/unittests/test000040.cpp copasi/sbml/unittests/test000040.cpp.new + mv copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + touch -r copasi/sbml/unittests/test000041.cpp copasi/sbml/unittests/test000041.cpp.new + mv copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + touch -r copasi/sbml/unittests/test000042.cpp copasi/sbml/unittests/test000042.cpp.new + mv copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + touch -r copasi/sbml/unittests/test000043.cpp copasi/sbml/unittests/test000043.cpp.new + mv copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + touch -r copasi/sbml/unittests/test000044.cpp copasi/sbml/unittests/test000044.cpp.new + mv copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + touch -r copasi/sbml/unittests/test000045.cpp copasi/sbml/unittests/test000045.cpp.new + mv copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + touch -r copasi/sbml/unittests/test000046.cpp copasi/sbml/unittests/test000046.cpp.new + mv copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + touch -r copasi/sbml/unittests/test000047.cpp copasi/sbml/unittests/test000047.cpp.new + mv copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + touch -r copasi/sbml/unittests/test000048.cpp copasi/sbml/unittests/test000048.cpp.new + mv copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + touch -r copasi/sbml/unittests/test000049.cpp copasi/sbml/unittests/test000049.cpp.new + mv copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + touch -r copasi/sbml/unittests/test000050.cpp copasi/sbml/unittests/test000050.cpp.new + mv copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + touch -r copasi/sbml/unittests/test000051.cpp copasi/sbml/unittests/test000051.cpp.new + mv copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + touch -r copasi/sbml/unittests/test000052.cpp copasi/sbml/unittests/test000052.cpp.new + mv copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + touch -r copasi/sbml/unittests/test000053.cpp copasi/sbml/unittests/test000053.cpp.new + mv copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + touch -r copasi/sbml/unittests/test000054.cpp copasi/sbml/unittests/test000054.cpp.new + mv copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + touch -r copasi/sbml/unittests/test000055.cpp copasi/sbml/unittests/test000055.cpp.new + mv copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + touch -r copasi/sbml/unittests/test000056.cpp copasi/sbml/unittests/test000056.cpp.new + mv copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + touch -r copasi/sbml/unittests/test000057.cpp copasi/sbml/unittests/test000057.cpp.new + mv copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + touch -r copasi/sbml/unittests/test000058.cpp copasi/sbml/unittests/test000058.cpp.new + mv copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + touch -r copasi/sbml/unittests/test000059.cpp copasi/sbml/unittests/test000059.cpp.new + mv copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + touch -r copasi/sbml/unittests/test000060.cpp copasi/sbml/unittests/test000060.cpp.new + mv copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + touch -r copasi/sbml/unittests/test000061.cpp copasi/sbml/unittests/test000061.cpp.new + mv copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + touch -r copasi/sbml/unittests/test000062.cpp copasi/sbml/unittests/test000062.cpp.new + mv copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + touch -r copasi/sbml/unittests/test000063.cpp copasi/sbml/unittests/test000063.cpp.new + mv copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + touch -r copasi/sbml/unittests/test000064.cpp copasi/sbml/unittests/test000064.cpp.new + mv copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + touch -r copasi/sbml/unittests/test000065.cpp copasi/sbml/unittests/test000065.cpp.new + mv copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + touch -r copasi/sbml/unittests/test000066.cpp copasi/sbml/unittests/test000066.cpp.new + mv copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + touch -r copasi/sbml/unittests/test000067.cpp copasi/sbml/unittests/test000067.cpp.new + mv copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + touch -r copasi/sbml/unittests/test000068.cpp copasi/sbml/unittests/test000068.cpp.new + mv copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + touch -r copasi/sbml/unittests/test000069.cpp copasi/sbml/unittests/test000069.cpp.new + mv copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + touch -r copasi/sbml/unittests/test000070.cpp copasi/sbml/unittests/test000070.cpp.new + mv copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + touch -r copasi/sbml/unittests/test000071.cpp copasi/sbml/unittests/test000071.cpp.new + mv copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + touch -r copasi/sbml/unittests/test000072.cpp copasi/sbml/unittests/test000072.cpp.new + mv copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + touch -r copasi/sbml/unittests/test000073.cpp copasi/sbml/unittests/test000073.cpp.new + mv copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + touch -r copasi/sbml/unittests/test000074.cpp copasi/sbml/unittests/test000074.cpp.new + mv copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + touch -r copasi/sbml/unittests/test000075.cpp copasi/sbml/unittests/test000075.cpp.new + mv copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + touch -r copasi/sbml/unittests/test000076.cpp copasi/sbml/unittests/test000076.cpp.new + mv copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + touch -r copasi/sbml/unittests/test000077.cpp copasi/sbml/unittests/test000077.cpp.new + mv copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + touch -r copasi/sbml/unittests/test000078.cpp copasi/sbml/unittests/test000078.cpp.new + mv copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + touch -r copasi/sbml/unittests/test000079.cpp copasi/sbml/unittests/test000079.cpp.new + mv copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + touch -r copasi/sbml/unittests/test000080.cpp copasi/sbml/unittests/test000080.cpp.new + mv copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + touch -r copasi/sbml/unittests/test000081.cpp copasi/sbml/unittests/test000081.cpp.new + mv copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + touch -r copasi/sbml/unittests/test000082.cpp copasi/sbml/unittests/test000082.cpp.new + mv copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + touch -r copasi/sbml/unittests/test000083.cpp copasi/sbml/unittests/test000083.cpp.new + mv copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + touch -r copasi/sbml/unittests/test000084.cpp copasi/sbml/unittests/test000084.cpp.new + mv copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + touch -r copasi/sbml/unittests/test000085.cpp copasi/sbml/unittests/test000085.cpp.new + mv copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + touch -r copasi/sbml/unittests/test000086.cpp copasi/sbml/unittests/test000086.cpp.new + mv copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + touch -r copasi/sbml/unittests/test000087.cpp copasi/sbml/unittests/test000087.cpp.new + mv copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + touch -r copasi/sbml/unittests/test000088.cpp copasi/sbml/unittests/test000088.cpp.new + mv copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + touch -r copasi/sbml/unittests/test000089.cpp copasi/sbml/unittests/test000089.cpp.new + mv copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + touch -r copasi/sbml/unittests/test000090.cpp copasi/sbml/unittests/test000090.cpp.new + mv copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + touch -r copasi/sbml/unittests/test000091.cpp copasi/sbml/unittests/test000091.cpp.new + mv copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + touch -r copasi/sbml/unittests/test000092.cpp copasi/sbml/unittests/test000092.cpp.new + mv copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + touch -r copasi/sbml/unittests/test000093.cpp copasi/sbml/unittests/test000093.cpp.new + mv copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + touch -r copasi/sbml/unittests/test000094.cpp copasi/sbml/unittests/test000094.cpp.new + mv copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + touch -r copasi/sbml/unittests/test000095.cpp copasi/sbml/unittests/test000095.cpp.new + mv copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + touch -r copasi/sbml/unittests/test000096.cpp copasi/sbml/unittests/test000096.cpp.new + mv copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + touch -r copasi/sbml/unittests/test000097.cpp copasi/sbml/unittests/test000097.cpp.new + mv copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + touch -r copasi/sbml/unittests/test000098.cpp copasi/sbml/unittests/test000098.cpp.new + mv copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + touch -r copasi/sbml/unittests/test000099.cpp copasi/sbml/unittests/test000099.cpp.new + mv copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + touch -r copasi/sbml/unittests/test000100.cpp copasi/sbml/unittests/test000100.cpp.new + mv copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + touch -r copasi/sbml/unittests/test000101.cpp copasi/sbml/unittests/test000101.cpp.new + mv copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + touch -r copasi/sbml/unittests/test000102.cpp copasi/sbml/unittests/test000102.cpp.new + mv copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + touch -r copasi/sbml/unittests/test000103.cpp copasi/sbml/unittests/test000103.cpp.new + mv copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + touch -r copasi/sbml/unittests/test000104.cpp copasi/sbml/unittests/test000104.cpp.new + mv copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + touch -r copasi/sbml/unittests/utilities.cpp copasi/sbml/unittests/utilities.cpp.new + mv copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + touch -r copasi/sbmlunit/CSBMLunit.cpp copasi/sbmlunit/CSBMLunit.cpp.new + mv copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + touch -r copasi/sbmlunit/CSBMLunitInterface.cpp copasi/sbmlunit/CSBMLunitInterface.cpp.new + mv copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + touch -r copasi/sbmlunit/Expression2PresentationMML.cpp copasi/sbmlunit/Expression2PresentationMML.cpp.new + mv copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + touch -r copasi/sbmlunit/Expression2PresentationMMLUnits.cpp copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new + mv copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + touch -r copasi/scan/CScanMethod.cpp copasi/scan/CScanMethod.cpp.new + mv copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + touch -r copasi/scan/CScanProblem.cpp copasi/scan/CScanProblem.cpp.new + mv copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + touch -r copasi/scan/CScanTask.cpp copasi/scan/CScanTask.cpp.new + mv copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + touch -r copasi/sedml/CSEDMLExporter.cpp copasi/sedml/CSEDMLExporter.cpp.new + mv copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + touch -r copasi/sedml/SEDMLImporter.cpp copasi/sedml/SEDMLImporter.cpp.new + mv copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + touch -r copasi/sedml/SEDMLUtils.cpp copasi/sedml/SEDMLUtils.cpp.new + mv copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + touch -r copasi/sensitivities/CSensMethod.cpp copasi/sensitivities/CSensMethod.cpp.new + mv copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + touch -r copasi/sensitivities/CSensProblem.cpp copasi/sensitivities/CSensProblem.cpp.new + mv copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + touch -r copasi/sensitivities/CSensTask.cpp copasi/sensitivities/CSensTask.cpp.new + mv copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + touch -r copasi/steadystate/CEigen.cpp copasi/steadystate/CEigen.cpp.new + mv copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + touch -r copasi/steadystate/CMCAMethod.cpp copasi/steadystate/CMCAMethod.cpp.new + mv copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + touch -r copasi/steadystate/CMCAProblem.cpp copasi/steadystate/CMCAProblem.cpp.new + mv copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + touch -r copasi/steadystate/CMCATask.cpp copasi/steadystate/CMCATask.cpp.new + mv copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + touch -r copasi/steadystate/CNewtonMethod.cpp copasi/steadystate/CNewtonMethod.cpp.new + mv copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + touch -r copasi/steadystate/CSteadyStateMethod.cpp copasi/steadystate/CSteadyStateMethod.cpp.new + mv copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + touch -r copasi/steadystate/CSteadyStateProblem.cpp copasi/steadystate/CSteadyStateProblem.cpp.new + mv copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + touch -r copasi/steadystate/CSteadyStateTask.cpp copasi/steadystate/CSteadyStateTask.cpp.new + mv copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test/test.cpp.new copasi/test/test.cpp + touch -r copasi/test/test.cpp copasi/test/test.cpp.new + mv copasi/test/test.cpp.new copasi/test/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + touch -r copasi/test2/CNormalFraction.cpp copasi/test2/CNormalFraction.cpp.new + mv copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + touch -r copasi/test2/CNormalItem.cpp copasi/test2/CNormalItem.cpp.new + mv copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + touch -r copasi/test2/CNormalItemPower.cpp copasi/test2/CNormalItemPower.cpp.new + mv copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + touch -r copasi/test2/CNormalLcm.cpp copasi/test2/CNormalLcm.cpp.new + mv copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + touch -r copasi/test2/CNormalProduct.cpp copasi/test2/CNormalProduct.cpp.new + mv copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + touch -r copasi/test2/CNormalSum.cpp copasi/test2/CNormalSum.cpp.new + mv copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + touch -r copasi/test2/CNormalTranslation.cpp copasi/test2/CNormalTranslation.cpp.new + mv copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/test.cpp.new copasi/test2/test.cpp + touch -r copasi/test2/test.cpp copasi/test2/test.cpp.new + mv copasi/test2/test.cpp.new copasi/test2/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + touch -r copasi/tex/CMathMLToTeX.cpp copasi/tex/CMathMLToTeX.cpp.new + mv copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + touch -r copasi/tex/CStructureParser.cpp copasi/tex/CStructureParser.cpp.new + mv copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensLsodaMethod.cpp.new copasi/timesens/CTimeSensLsodaMethod.cpp + touch -r copasi/timesens/CTimeSensLsodaMethod.cpp copasi/timesens/CTimeSensLsodaMethod.cpp.new + mv copasi/timesens/CTimeSensLsodaMethod.cpp.new copasi/timesens/CTimeSensLsodaMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensMethod.cpp.new copasi/timesens/CTimeSensMethod.cpp + touch -r copasi/timesens/CTimeSensMethod.cpp copasi/timesens/CTimeSensMethod.cpp.new + mv copasi/timesens/CTimeSensMethod.cpp.new copasi/timesens/CTimeSensMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensProblem.cpp.new copasi/timesens/CTimeSensProblem.cpp + touch -r copasi/timesens/CTimeSensProblem.cpp copasi/timesens/CTimeSensProblem.cpp.new + mv copasi/timesens/CTimeSensProblem.cpp.new copasi/timesens/CTimeSensProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensTask.cpp.new copasi/timesens/CTimeSensTask.cpp + touch -r copasi/timesens/CTimeSensTask.cpp copasi/timesens/CTimeSensTask.cpp.new + mv copasi/timesens/CTimeSensTask.cpp.new copasi/timesens/CTimeSensTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + touch -r copasi/trajectory/CHybridMethod.cpp copasi/trajectory/CHybridMethod.cpp.new + mv copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + touch -r copasi/trajectory/CHybridMethodODE45.cpp copasi/trajectory/CHybridMethodODE45.cpp.new + mv copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionLSODAMethod.cpp copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionRKMethod.cpp copasi/trajectory/CHybridNextReactionRKMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + touch -r copasi/trajectory/CLsodaMethod.cpp copasi/trajectory/CLsodaMethod.cpp.new + mv copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + touch -r copasi/trajectory/CLsodaMethod2.cpp copasi/trajectory/CLsodaMethod2.cpp.new + mv copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRadau5Method.cpp.new copasi/trajectory/CRadau5Method.cpp + touch -r copasi/trajectory/CRadau5Method.cpp copasi/trajectory/CRadau5Method.cpp.new + mv copasi/trajectory/CRadau5Method.cpp.new copasi/trajectory/CRadau5Method.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + touch -r copasi/trajectory/CRootFinder.cpp copasi/trajectory/CRootFinder.cpp.new + mv copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + touch -r copasi/trajectory/CRungeKutta.cpp copasi/trajectory/CRungeKutta.cpp.new + mv copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + touch -r copasi/trajectory/CStochDirectMethod.cpp copasi/trajectory/CStochDirectMethod.cpp.new + mv copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + touch -r copasi/trajectory/CStochMethod.cpp copasi/trajectory/CStochMethod.cpp.new + mv copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + touch -r copasi/trajectory/CStochNextReactionMethod.cpp copasi/trajectory/CStochNextReactionMethod.cpp.new + mv copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + touch -r copasi/trajectory/CStochasticRungeKuttaRI5.cpp copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new + mv copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + touch -r copasi/trajectory/CTauLeapMethod.cpp copasi/trajectory/CTauLeapMethod.cpp.new + mv copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + touch -r copasi/trajectory/CTimeSeries.cpp copasi/trajectory/CTimeSeries.cpp.new + mv copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + touch -r copasi/trajectory/CTrajAdaptiveSA.cpp copasi/trajectory/CTrajAdaptiveSA.cpp.new + mv copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + touch -r copasi/trajectory/CTrajectoryMethod.cpp copasi/trajectory/CTrajectoryMethod.cpp.new + mv copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + touch -r copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new + mv copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + touch -r copasi/trajectory/CTrajectoryProblem.cpp copasi/trajectory/CTrajectoryProblem.cpp.new + mv copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + touch -r copasi/trajectory/CTrajectoryTask.cpp copasi/trajectory/CTrajectoryTask.cpp.new + mv copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + touch -r copasi/tss/CODEExporter.cpp copasi/tss/CODEExporter.cpp.new + mv copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + touch -r copasi/tss/CODEExporterBM.cpp copasi/tss/CODEExporterBM.cpp.new + mv copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + touch -r copasi/tss/CODEExporterC.cpp copasi/tss/CODEExporterC.cpp.new + mv copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + touch -r copasi/tss/CODEExporterXPPAUT.cpp copasi/tss/CODEExporterXPPAUT.cpp.new + mv copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + touch -r copasi/tssanalysis/CCSPMethod.cpp copasi/tssanalysis/CCSPMethod.cpp.new + mv copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + touch -r copasi/tssanalysis/CILDMMethod.cpp copasi/tssanalysis/CILDMMethod.cpp.new + mv copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + touch -r copasi/tssanalysis/CILDMModifiedMethod.cpp copasi/tssanalysis/CILDMModifiedMethod.cpp.new + mv copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + touch -r copasi/tssanalysis/CTSSAMethod.cpp copasi/tssanalysis/CTSSAMethod.cpp.new + mv copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + touch -r copasi/tssanalysis/CTSSAProblem.cpp copasi/tssanalysis/CTSSAProblem.cpp.new + mv copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + touch -r copasi/tssanalysis/CTSSATask.cpp copasi/tssanalysis/CTSSATask.cpp.new + mv copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CData.cpp.new copasi/undo/CData.cpp + touch -r copasi/undo/CData.cpp copasi/undo/CData.cpp.new + mv copasi/undo/CData.cpp.new copasi/undo/CData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + touch -r copasi/undo/CDataValue.cpp copasi/undo/CDataValue.cpp.new + mv copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + touch -r copasi/undo/CUndoData.cpp copasi/undo/CUndoData.cpp.new + mv copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoObjectInterface.cpp.new copasi/undo/CUndoObjectInterface.cpp + touch -r copasi/undo/CUndoObjectInterface.cpp copasi/undo/CUndoObjectInterface.cpp.new + mv copasi/undo/CUndoObjectInterface.cpp.new copasi/undo/CUndoObjectInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + touch -r copasi/undo/CUndoStack.cpp copasi/undo/CUndoStack.cpp.new + mv copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + touch -r copasi/undoUI/CQUndoDM.cpp copasi/undoUI/CQUndoDM.cpp.new + mv copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + touch -r copasi/undoUI/CQUndoDialog.cpp copasi/undoUI/CQUndoDialog.cpp.new + mv copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + touch -r copasi/utilities/CBaseUnit.cpp copasi/utilities/CBaseUnit.cpp.new + mv copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + touch -r copasi/utilities/CBrent.cpp copasi/utilities/CBrent.cpp.new + mv copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + touch -r copasi/utilities/CCopasiException.cpp copasi/utilities/CCopasiException.cpp.new + mv copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + touch -r copasi/utilities/CCopasiMessage.cpp copasi/utilities/CCopasiMessage.cpp.new + mv copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + touch -r copasi/utilities/CCopasiMethod.cpp copasi/utilities/CCopasiMethod.cpp.new + mv copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + touch -r copasi/utilities/CCopasiParameter.cpp copasi/utilities/CCopasiParameter.cpp.new + mv copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + touch -r copasi/utilities/CCopasiParameterGroup.cpp copasi/utilities/CCopasiParameterGroup.cpp.new + mv copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + touch -r copasi/utilities/CCopasiProblem.cpp copasi/utilities/CCopasiProblem.cpp.new + mv copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + touch -r copasi/utilities/CCopasiTask.cpp copasi/utilities/CCopasiTask.cpp.new + mv copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + touch -r copasi/utilities/CCopasiTaskStatus.cpp copasi/utilities/CCopasiTaskStatus.cpp.new + mv copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + touch -r copasi/utilities/CDependencyGraph.cpp copasi/utilities/CDependencyGraph.cpp.new + mv copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + touch -r copasi/utilities/CDirEntry.cpp copasi/utilities/CDirEntry.cpp.new + mv copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CExpressionGenerator.cpp.new copasi/utilities/CExpressionGenerator.cpp + touch -r copasi/utilities/CExpressionGenerator.cpp copasi/utilities/CExpressionGenerator.cpp.new + mv copasi/utilities/CExpressionGenerator.cpp.new copasi/utilities/CExpressionGenerator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + touch -r copasi/utilities/CIndexedPriorityQueue.cpp copasi/utilities/CIndexedPriorityQueue.cpp.new + mv copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CLeastSquareSolution.cpp.new copasi/utilities/CLeastSquareSolution.cpp + touch -r copasi/utilities/CLeastSquareSolution.cpp copasi/utilities/CLeastSquareSolution.cpp.new + mv copasi/utilities/CLeastSquareSolution.cpp.new copasi/utilities/CLeastSquareSolution.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + touch -r copasi/utilities/CLinkMatrix.cpp copasi/utilities/CLinkMatrix.cpp.new + mv copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CMethodFactory.cpp.new copasi/utilities/CMethodFactory.cpp + touch -r copasi/utilities/CMethodFactory.cpp copasi/utilities/CMethodFactory.cpp.new + mv copasi/utilities/CMethodFactory.cpp.new copasi/utilities/CMethodFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + touch -r copasi/utilities/CParameterEstimationUtils.cpp copasi/utilities/CParameterEstimationUtils.cpp.new + mv copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CProblemFactory.cpp.new copasi/utilities/CProblemFactory.cpp + touch -r copasi/utilities/CProblemFactory.cpp copasi/utilities/CProblemFactory.cpp.new + mv copasi/utilities/CProblemFactory.cpp.new copasi/utilities/CProblemFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + touch -r copasi/utilities/CProcessReport.cpp copasi/utilities/CProcessReport.cpp.new + mv copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + touch -r copasi/utilities/CReadConfig.cpp copasi/utilities/CReadConfig.cpp.new + mv copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + touch -r copasi/utilities/CSlider.cpp copasi/utilities/CSlider.cpp.new + mv copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + touch -r copasi/utilities/CSparseMatrix.cpp copasi/utilities/CSparseMatrix.cpp.new + mv copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + touch -r copasi/utilities/CTableCell.cpp copasi/utilities/CTableCell.cpp.new + mv copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + touch -r copasi/utilities/CTaskEnum.cpp copasi/utilities/CTaskEnum.cpp.new + mv copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + touch -r copasi/utilities/CTaskFactory.cpp copasi/utilities/CTaskFactory.cpp.new + mv copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + touch -r copasi/utilities/CUnit.cpp copasi/utilities/CUnit.cpp.new + mv copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + touch -r copasi/utilities/CUnitComponent.cpp copasi/utilities/CUnitComponent.cpp.new + mv copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + touch -r copasi/utilities/CUnitDefinition.cpp copasi/utilities/CUnitDefinition.cpp.new + mv copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + touch -r copasi/utilities/CUnitDefinitionDB.cpp copasi/utilities/CUnitDefinitionDB.cpp.new + mv copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + touch -r copasi/utilities/CUnitParser.cpp copasi/utilities/CUnitParser.cpp.new + mv copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + touch -r copasi/utilities/CUnitParser_lex.cpp copasi/utilities/CUnitParser_lex.cpp.new + mv copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + touch -r copasi/utilities/CUnitParser_yacc.cpp copasi/utilities/CUnitParser_yacc.cpp.new + mv copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + touch -r copasi/utilities/CUnitValidator.cpp copasi/utilities/CUnitValidator.cpp.new + mv copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + touch -r copasi/utilities/CValidatedUnit.cpp copasi/utilities/CValidatedUnit.cpp.new + mv copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + touch -r copasi/utilities/CValidity.cpp copasi/utilities/CValidity.cpp.new + mv copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + touch -r copasi/utilities/CVersion.cpp copasi/utilities/CVersion.cpp.new + mv copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + touch -r copasi/utilities/CluX.cpp copasi/utilities/CluX.cpp.new + mv copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/Cmd5.cpp.new copasi/utilities/Cmd5.cpp + touch -r copasi/utilities/Cmd5.cpp copasi/utilities/Cmd5.cpp.new + mv copasi/utilities/Cmd5.cpp.new copasi/utilities/Cmd5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + touch -r copasi/utilities/CopasiTime.cpp copasi/utilities/CopasiTime.cpp.new + mv copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/dgemm.cpp.new copasi/utilities/dgemm.cpp + touch -r copasi/utilities/dgemm.cpp copasi/utilities/dgemm.cpp.new + mv copasi/utilities/dgemm.cpp.new copasi/utilities/dgemm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + touch -r copasi/utilities/utility.cpp copasi/utilities/utility.cpp.new + mv copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + touch -r copasi/versioning/CModelVersion.cpp copasi/versioning/CModelVersion.cpp.new + mv copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CModelVersionHierarchy.cpp.new copasi/versioning/CModelVersionHierarchy.cpp + touch -r copasi/versioning/CModelVersionHierarchy.cpp copasi/versioning/CModelVersionHierarchy.cpp.new + mv copasi/versioning/CModelVersionHierarchy.cpp.new copasi/versioning/CModelVersionHierarchy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CVCard.cpp.new copasi/versioning/CVCard.cpp + touch -r copasi/versioning/CVCard.cpp copasi/versioning/CVCard.cpp.new + mv copasi/versioning/CVCard.cpp.new copasi/versioning/CVCard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CBrowseModelVersionDialog.cpp.new copasi/versioningUI/CBrowseModelVersionDialog.cpp + touch -r copasi/versioningUI/CBrowseModelVersionDialog.cpp copasi/versioningUI/CBrowseModelVersionDialog.cpp.new + mv copasi/versioningUI/CBrowseModelVersionDialog.cpp.new copasi/versioningUI/CBrowseModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CCreateModelVersionDialog.cpp.new copasi/versioningUI/CCreateModelVersionDialog.cpp + touch -r copasi/versioningUI/CCreateModelVersionDialog.cpp copasi/versioningUI/CCreateModelVersionDialog.cpp.new + mv copasi/versioningUI/CCreateModelVersionDialog.cpp.new copasi/versioningUI/CCreateModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new copasi/versioningUI/CQModelVersionHierarchyDM.cpp + touch -r copasi/versioningUI/CQModelVersionHierarchyDM.cpp copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new + mv copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new copasi/versioningUI/CQModelVersionHierarchyDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + touch -r copasi/wizard/wizard.cpp copasi/wizard/wizard.cpp.new + mv copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + touch -r copasi/xml/CCopasiXML.cpp copasi/xml/CCopasiXML.cpp.new + mv copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + touch -r copasi/xml/CCopasiXMLInterface.cpp copasi/xml/CCopasiXMLInterface.cpp.new + mv copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + touch -r copasi/xml/CExpat.cpp copasi/xml/CExpat.cpp.new + mv copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + touch -r copasi/xml/CFixLocalReactionParameters.cpp copasi/xml/CFixLocalReactionParameters.cpp.new + mv copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CGroupXML.cpp.new copasi/xml/CGroupXML.cpp + touch -r copasi/xml/CGroupXML.cpp copasi/xml/CGroupXML.cpp.new + mv copasi/xml/CGroupXML.cpp.new copasi/xml/CGroupXML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + touch -r copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new + mv copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + touch -r copasi/xml/parser/AssignmentHandler.cpp copasi/xml/parser/AssignmentHandler.cpp.new + mv copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + touch -r copasi/xml/parser/BoundingBoxHandler.cpp copasi/xml/parser/BoundingBoxHandler.cpp.new + mv copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + touch -r copasi/xml/parser/COPASIHandler.cpp copasi/xml/parser/COPASIHandler.cpp.new + mv copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + touch -r copasi/xml/parser/CXMLHandler.cpp copasi/xml/parser/CXMLHandler.cpp.new + mv copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + touch -r copasi/xml/parser/CXMLHandlerFactory.cpp copasi/xml/parser/CXMLHandlerFactory.cpp.new + mv copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + touch -r copasi/xml/parser/CXMLParser.cpp copasi/xml/parser/CXMLParser.cpp.new + mv copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + touch -r copasi/xml/parser/CXMLParserData.cpp copasi/xml/parser/CXMLParserData.cpp.new + mv copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + touch -r copasi/xml/parser/CallParameterHandler.cpp copasi/xml/parser/CallParameterHandler.cpp.new + mv copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + touch -r copasi/xml/parser/ChannelSpecHandler.cpp copasi/xml/parser/ChannelSpecHandler.cpp.new + mv copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + touch -r copasi/xml/parser/CharacterDataHandler.cpp copasi/xml/parser/CharacterDataHandler.cpp.new + mv copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + touch -r copasi/xml/parser/ColorDefinitionHandler.cpp copasi/xml/parser/ColorDefinitionHandler.cpp.new + mv copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + touch -r copasi/xml/parser/CommentHandler.cpp copasi/xml/parser/CommentHandler.cpp.new + mv copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + touch -r copasi/xml/parser/CompartmentGlyphHandler.cpp copasi/xml/parser/CompartmentGlyphHandler.cpp.new + mv copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + touch -r copasi/xml/parser/CompartmentHandler.cpp copasi/xml/parser/CompartmentHandler.cpp.new + mv copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + touch -r copasi/xml/parser/ConstantHandler.cpp copasi/xml/parser/ConstantHandler.cpp.new + mv copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + touch -r copasi/xml/parser/CubicBezierHandler.cpp copasi/xml/parser/CubicBezierHandler.cpp.new + mv copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + touch -r copasi/xml/parser/CurveHandler.cpp copasi/xml/parser/CurveHandler.cpp.new + mv copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + touch -r copasi/xml/parser/DimensionsHandler.cpp copasi/xml/parser/DimensionsHandler.cpp.new + mv copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + touch -r copasi/xml/parser/EllipseHandler.cpp copasi/xml/parser/EllipseHandler.cpp.new + mv copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + touch -r copasi/xml/parser/EventHandler.cpp copasi/xml/parser/EventHandler.cpp.new + mv copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + touch -r copasi/xml/parser/FunctionHandler.cpp copasi/xml/parser/FunctionHandler.cpp.new + mv copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + touch -r copasi/xml/parser/GUIHandler.cpp copasi/xml/parser/GUIHandler.cpp.new + mv copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + touch -r copasi/xml/parser/GradientStopHandler.cpp copasi/xml/parser/GradientStopHandler.cpp.new + mv copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + touch -r copasi/xml/parser/GroupHandler.cpp copasi/xml/parser/GroupHandler.cpp.new + mv copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + touch -r copasi/xml/parser/ImageHandler.cpp copasi/xml/parser/ImageHandler.cpp.new + mv copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + touch -r copasi/xml/parser/InitialStateHandler.cpp copasi/xml/parser/InitialStateHandler.cpp.new + mv copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + touch -r copasi/xml/parser/KineticLawHandler.cpp copasi/xml/parser/KineticLawHandler.cpp.new + mv copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + touch -r copasi/xml/parser/LayoutHandler.cpp copasi/xml/parser/LayoutHandler.cpp.new + mv copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + touch -r copasi/xml/parser/LineEndingHandler.cpp copasi/xml/parser/LineEndingHandler.cpp.new + mv copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + touch -r copasi/xml/parser/LineSegmentHandler.cpp copasi/xml/parser/LineSegmentHandler.cpp.new + mv copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + touch -r copasi/xml/parser/LinearGradientHandler.cpp copasi/xml/parser/LinearGradientHandler.cpp.new + mv copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + touch -r copasi/xml/parser/ListOfCurveSegmentsHandler.cpp copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new + mv copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + touch -r copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new + mv copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + touch -r copasi/xml/parser/ListOfHandler.cpp copasi/xml/parser/ListOfHandler.cpp.new + mv copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + touch -r copasi/xml/parser/ListOfLayoutsHandler.cpp copasi/xml/parser/ListOfLayoutsHandler.cpp.new + mv copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + touch -r copasi/xml/parser/MathMLHandler.cpp copasi/xml/parser/MathMLHandler.cpp.new + mv copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteGlyphHandler.cpp copasi/xml/parser/MetaboliteGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + touch -r copasi/xml/parser/MetaboliteHandler.cpp copasi/xml/parser/MetaboliteHandler.cpp.new + mv copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + touch -r copasi/xml/parser/MethodHandler.cpp copasi/xml/parser/MethodHandler.cpp.new + mv copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + touch -r copasi/xml/parser/MiriamAnnotationHandler.cpp copasi/xml/parser/MiriamAnnotationHandler.cpp.new + mv copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + touch -r copasi/xml/parser/ModelHandler.cpp copasi/xml/parser/ModelHandler.cpp.new + mv copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + touch -r copasi/xml/parser/ModelParameterGroupHandler.cpp copasi/xml/parser/ModelParameterGroupHandler.cpp.new + mv copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + touch -r copasi/xml/parser/ModelParameterHandler.cpp copasi/xml/parser/ModelParameterHandler.cpp.new + mv copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + touch -r copasi/xml/parser/ModelParameterSetHandler.cpp copasi/xml/parser/ModelParameterSetHandler.cpp.new + mv copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + touch -r copasi/xml/parser/ModelValueHandler.cpp copasi/xml/parser/ModelValueHandler.cpp.new + mv copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + touch -r copasi/xml/parser/ModifierHandler.cpp copasi/xml/parser/ModifierHandler.cpp.new + mv copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + touch -r copasi/xml/parser/ObjectHandler.cpp copasi/xml/parser/ObjectHandler.cpp.new + mv copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + touch -r copasi/xml/parser/ParameterDescriptionHandler.cpp copasi/xml/parser/ParameterDescriptionHandler.cpp.new + mv copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + touch -r copasi/xml/parser/ParameterGroupHandler.cpp copasi/xml/parser/ParameterGroupHandler.cpp.new + mv copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + touch -r copasi/xml/parser/ParameterHandler.cpp copasi/xml/parser/ParameterHandler.cpp.new + mv copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + touch -r copasi/xml/parser/ParameterTextHandler.cpp copasi/xml/parser/ParameterTextHandler.cpp.new + mv copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + touch -r copasi/xml/parser/PlotItemHandler.cpp copasi/xml/parser/PlotItemHandler.cpp.new + mv copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + touch -r copasi/xml/parser/PlotSpecificationHandler.cpp copasi/xml/parser/PlotSpecificationHandler.cpp.new + mv copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + touch -r copasi/xml/parser/PointHandler.cpp copasi/xml/parser/PointHandler.cpp.new + mv copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + touch -r copasi/xml/parser/PolygonHandler.cpp copasi/xml/parser/PolygonHandler.cpp.new + mv copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + touch -r copasi/xml/parser/ProductHandler.cpp copasi/xml/parser/ProductHandler.cpp.new + mv copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + touch -r copasi/xml/parser/RadialGradientHandler.cpp copasi/xml/parser/RadialGradientHandler.cpp.new + mv copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + touch -r copasi/xml/parser/ReactionGlyphHandler.cpp copasi/xml/parser/ReactionGlyphHandler.cpp.new + mv copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + touch -r copasi/xml/parser/ReactionHandler.cpp copasi/xml/parser/ReactionHandler.cpp.new + mv copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + touch -r copasi/xml/parser/RectangleHandler.cpp copasi/xml/parser/RectangleHandler.cpp.new + mv copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + touch -r copasi/xml/parser/RenderCurveElementHandler.cpp copasi/xml/parser/RenderCurveElementHandler.cpp.new + mv copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + touch -r copasi/xml/parser/RenderCurveHandler.cpp copasi/xml/parser/RenderCurveHandler.cpp.new + mv copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + touch -r copasi/xml/parser/RenderInformationHandler.cpp copasi/xml/parser/RenderInformationHandler.cpp.new + mv copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + touch -r copasi/xml/parser/RenderTextHandler.cpp copasi/xml/parser/RenderTextHandler.cpp.new + mv copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + touch -r copasi/xml/parser/ReportDefinitionHandler.cpp copasi/xml/parser/ReportDefinitionHandler.cpp.new + mv copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + touch -r copasi/xml/parser/ReportSectionHandler.cpp copasi/xml/parser/ReportSectionHandler.cpp.new + mv copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + touch -r copasi/xml/parser/ReportTargetHandler.cpp copasi/xml/parser/ReportTargetHandler.cpp.new + mv copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + touch -r copasi/xml/parser/SBMLMapHandler.cpp copasi/xml/parser/SBMLMapHandler.cpp.new + mv copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + touch -r copasi/xml/parser/SliderHandler.cpp copasi/xml/parser/SliderHandler.cpp.new + mv copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + touch -r copasi/xml/parser/SourceParameterHandler.cpp copasi/xml/parser/SourceParameterHandler.cpp.new + mv copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + touch -r copasi/xml/parser/StateTemplateHandler.cpp copasi/xml/parser/StateTemplateHandler.cpp.new + mv copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + touch -r copasi/xml/parser/StateTemplateVariableHandler.cpp copasi/xml/parser/StateTemplateVariableHandler.cpp.new + mv copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + touch -r copasi/xml/parser/StyleHandler.cpp copasi/xml/parser/StyleHandler.cpp.new + mv copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + touch -r copasi/xml/parser/SubstrateHandler.cpp copasi/xml/parser/SubstrateHandler.cpp.new + mv copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + touch -r copasi/xml/parser/TableHandler.cpp copasi/xml/parser/TableHandler.cpp.new + mv copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + touch -r copasi/xml/parser/TaskHandler.cpp copasi/xml/parser/TaskHandler.cpp.new + mv copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + touch -r copasi/xml/parser/TextGlyphHandler.cpp copasi/xml/parser/TextGlyphHandler.cpp.new + mv copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + touch -r copasi/xml/parser/UNKNOWNHandler.cpp copasi/xml/parser/UNKNOWNHandler.cpp.new + mv copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + touch -r copasi/xml/parser/UnitDefinitionHandler.cpp copasi/xml/parser/UnitDefinitionHandler.cpp.new + mv copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp + touch -r copasi/xml/parser/UnsupportedAnnotationHandler.cpp copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new + mv copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp Patch #0 (COPASI-fix_install_libpaths.patch): + echo 'Patch #0 (COPASI-fix_install_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_install_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 917 (offset 74 lines). patching file copasi/bindings/csharp/CMakeLists.txt Hunk #1 succeeded at 170 (offset 14 lines). Hunk #2 succeeded at 198 (offset 14 lines). patching file copasi/bindings/perl/CMakeLists.txt Hunk #1 succeeded at 158 (offset 5 lines). Hunk #2 succeeded at 175 (offset 5 lines). patching file copasi/bindings/python/CMakeLists.txt Hunk #1 succeeded at 163 (offset -2 lines). patching file copasi/bindings/java/CMakeLists.txt Hunk #1 succeeded at 159 (offset 8 lines). Hunk #2 succeeded at 192 (offset 8 lines). patching file copasi/bindings/octave/CMakeLists.txt Hunk #1 succeeded at 153 (offset 6 lines). Patch #6 (COPASI-libCombine_paths.patch): + echo 'Patch #6 (COPASI-libCombine_paths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .libCombine_paths --fuzz=0 patching file CMakeModules/FindLIBCOMBINE.cmake Hunk #3 succeeded at 147 (offset 25 lines). Patch #7 (COPASI-find_crossguid2.patch): + echo 'Patch #7 (COPASI-find_crossguid2.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_crossguid2 --fuzz=0 patching file CMakeModules/FindCROSSGUID.cmake Hunk #2 succeeded at 35 (offset 1 line). Hunk #3 succeeded at 54 (offset 2 lines). Hunk #4 succeeded at 86 (offset 3 lines). Patch #8 (COPASI-use_c++17.patch): + echo 'Patch #8 (COPASI-use_c++17.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .use_c++17 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 129 (offset 11 lines). Patch #9 (COPASI-find_libsedml.patch): + echo 'Patch #9 (COPASI-find_libsedml.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_libsedml --fuzz=0 patching file CMakeModules/FindLIBSEDML.cmake Hunk #1 succeeded at 66 (offset 2 lines). Hunk #2 succeeded at 90 (offset 3 lines). Hunk #3 succeeded at 117 (offset 4 lines). Patch #10 (COPASI-find_sbw.patch): + echo 'Patch #10 (COPASI-find_sbw.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_sbw --fuzz=0 patching file CMakeModules/FindSBW.cmake Patch #13 (COPASI-qwt62.patch): + echo 'Patch #13 (COPASI-qwt62.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .qwt --fuzz=0 patching file copasi/plotUI/C2DCurveData.h patching file copasi/plotUI/C2DPlotCurve.h patching file copasi/plotUI/CBandedGraphData.h patching file copasi/plotUI/CHistoCurveData.h patching file copasi/plotUI/CLinearColorMap.h patching file copasi/plotUI/CPlotSpectogram.h patching file copasi/plotUI/CQwtPlot.cpp patching file copasi/plotUI/CQwtPlot.h patching file copasi/plotUI/CSpectorgramData.h patching file copasi/plotUI/scrollzoomer.cpp patching file copasi/plotUI/scrollzoomer.h Patch #14 (COPASI-4.41.283-fix_missing_header.patch): + echo 'Patch #14 (COPASI-4.41.283-fix_missing_header.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file copasi/plotUI/CQMarchingSquares.cpp Patch #15 (COPASI-find_qcp_libs.patch): + echo 'Patch #15 (COPASI-find_qcp_libs.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file CMakeModules/FindQCP.cmake Patch #11 (COPASI-porting_to_python310.patch): + echo 'Patch #11 (COPASI-porting_to_python310.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .porting_to_python310 --fuzz=0 patching file copasi/bindings/python/CMakeLists.txt Hunk #1 succeeded at 156 (offset 3 lines). Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch): + echo 'Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file CMakeModules/FindQWT.cmake Hunk #1 succeeded at 19 (offset -5 lines). Hunk #2 succeeded at 30 (offset -5 lines). patching file CMakeModules/FindMML.cmake + sed -e 's|@@libdir@@|/usr/lib64|g' -i CMakeModules/FindQWT.cmake Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch): + echo 'Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .QWTPLOT3D_QT5 --fuzz=0 patching file CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@qtplot3d_includedir@@|/usr/include/qt5/qwtplot3d-qt5|g' -i CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@qtplot3d_libdir@@|/usr/lib64|g' -i CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@_libmml_includedir@@|/usr/include/qt5/libmml-qt5|g' -i CMakeModules/FindMML.cmake + sed -e 's|@@_libmml_libdir@@|/usr/lib64|g' -i CMakeModules/FindMML.cmake + sed -i.bak '/double sqrt(doublereal);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/double pow_dd(doublereal *, doublereal *);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/int s_copy(char *, char *, ftnlen, ftnlen);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/double sqrt(doublereal);/d' copasi/odepack++/dc_decsol.cpp + sed -i.bak '/double sqrt(doublereal),/d' copasi/odepack++/CRadau5.cpp + sed -i.bak '/double pow_dd(doublereal *,/d' copasi/odepack++/CRadau5.cpp + sed -i.bak '/C_FLOAT64 d_lg10(C_FLOAT64 *);/d' copasi/optimization/CPraxis.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.53luMm + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-298 + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCOPASI_OVERRIDE_VERSION:STRING=4.45.298 -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.13.so -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DENABLE_JIT:BOOL=OFF -DSELECT_QT=Qt5 -DCOPASI_USE_RAPTOR:BOOL=OFF -DSITE:STRING=fedora -DF2C_INTEGER=int -DF2C_LOGICAL=long '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG' -DCOPASI_INSTALL_C_API=OFF -DCombine_DIR:PATH=/usr/lib64/cmake '-DCMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread' '-DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread' -DQT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake-qt5 -DQWT_VERSION_STRING:STRING=6.2.0 -DQWT_LIBRARY:FILEPATH=/usr/lib64/libqwt-qt5.so -DQWT_INCLUDE_DIR:PATH=/usr/include/qt5/qwt -DBUILD_GUI:BOOL=ON -DBUILD_COPASISBW:BOOL=ON -DENABLE_MML:BOOL=ON -DENABLE_USE_SBMLUNIT=ON -DMML_INCLUDE_DIR:PATH=/usr/include/qt5/libmml-qt5 -DMML_LIBRARY:FILEPATH=/usr/lib64/libmml.so -DENABLE_SBW_INTEGRATION=ON -DBUILD_CXX_EXAMPLES=OFF -DENABLE_COPASI_BANDED_GRAPH:BOOL=ON -DENABLE_COPASI_SEDML:BOOL=ON -DENABLE_COPASI_NONLIN_DYN_OSCILLATION:BOOL=ON -DENABLE_COPASI_EXTUNIT:BOOL=ON -DCOPASI_OVERWRITE_USE_LAPACK:BOOL=ON -DNO_BLAS_WRAP:BOOL=ON -DBLA_VENDOR=Generic -DBLAS_blas_LIBRARY:FILEPATH=/usr/lib64/libflexiblas.so -DLAPACK_lapack_LIBRARY:FILEPATH=/usr/lib64/libflexiblas.so -DCROSSGUID_INCLUDE_DIR:PATH=/usr/include/crossguid2 -DENABLE_COPASI_PARAMETERFITTING_RESIDUAL_SCALING:BOOL=ON -DENABLE_WITH_MERGEMODEL:BOOL=ON -DENABLE_USE_MATH_CONTAINER:BOOL=ON -DLIBSBML_INCLUDE_DIR:PATH=/usr/include/sbml -DLIBSBML_SHARED:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DLIBNUML_LIBRARY:FILEPATH=/usr/lib64/libnuml.so -DEXTRA_INCLUDE_DIRS:STRING=-I/usr/include/numl -DEXPAT_LIBRARY:FILEPATH=/usr/lib64/libexpat.so -DEXPAT_INCLUDE_DIR:PATH=/usr/include -DF2C_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DENABLE_GPROF:BOOL=OFF -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DENABLE_FLEX_BISON:BOOL=ON -DBISON_EXECUTABLE:FILEPATH=/usr/bin/bison -DPREFER_STATIC:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCOPASI_USE_QCUSTOMPLOT:BOOL=ON CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is GNU 15.1.1 -- The CXX compiler identification is GNU 15.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for strptime -- Looking for strptime - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of size_t -- Check size of size_t - done -- Performing Test EXPAT_EXPAT_TEST -- Performing Test EXPAT_EXPAT_TEST - Success -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.7.1") -- Found LIBSBML: sbml -- Found LIBSEDML: /lib64/libsedml.so (found version "2.0.33") -- Found LIBCOMBINE: /usr/lib64/libCombine.so.0.2.20;z;sbml;Zipper;numl;sbml;xml2;bz2;z;m;dl;expat (found version "0.2.20") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found BISON: /usr/bin/bison (found version "3.8.2") -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Looking for cheev_ -- Looking for cheev_ - found -- Found CLAPACK: /usr/lib64/libflexiblas.so;/usr/lib64/libflexiblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Found LIBUUID: //usr/lib64/libuuid.so -- Found CROSSGUID: /usr/include/crossguid2 -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found QCP: /usr/lib64/libqcustomplot-qt5.so -- Using Qt5 -- Found QWT: /usr/lib64/libqwt-qt5.so -- Found MML: /usr/lib64/libmml.so -- Found SBW: //usr/lib64/libSBW.so -- Found SWIG: /usr/bin/swig (found version "4.3.1") -- Mocing with options: -DWITH_TIME_SENS=1;-DWITH_QT5_VISUALIZATION=1;-DCOPASI_SBW_INTEGRATION=1;-DCOPASI_BANDED_GRAPH=1;-DCOPASI_NONLIN_DYN_OSCILLATION=1;-DQT_USE_TEXTBROWSER=1;-DCOPASI_USE_QWT=1;-DCOPASI_USE_QCUSTOMPLOT=1;-DQWT_VERSION=0x060200 -- Mocing files for subdir: barChart -- Mocing files for subdir: layoutUI -- Mocing files for subdir: MIRIAMUI -- Mocing files for subdir: plotUI -- Mocing files for subdir: tex -- Mocing files for subdir: UI -- Mocing files for subdir: wizard -- Mocing files for subdir: qlayout -- Mocing files for subdir: undoFramework -- Mocing files for subdir: undoUI -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /lib64/libz.so (found version "1.3.1.zlib-ng") -- Found PythonInterp: /usr/bin/python3 (found version "3.13.3") -- Found PythonLibs: /usr/lib64/libpython3.13.so (found version "3.13.3") -- Found Python: /usr/bin/python3.13 (found version "3.13.3") found components: Interpreter -- ----------------------------------------------------------- Building COPASI 4.45.298 (Release) Source Dir = /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 Binary Dir = /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 Install Prefix = /usr Dependencies: Vendor = Generic LAPACK Libs = /usr/lib64/libflexiblas.so;/usr/lib64/libflexiblas.so LAPACK LDFLAGS = LAPACK include = /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack crossguid Libs = /lib64/libcrossguid2.so;//usr/lib64/libuuid.so cross include = /usr/include/crossguid2 Expat version = 2.7.1 Expat Libs = /usr/lib64/libexpat.so Expat include = /usr/include Raptor version = Raptor Libs = Raptor include = libSBML version = libSBML lib = /usr/lib64/libsbml.so libSBML include = /usr/include/sbml Qt version = 5.15.16 Qt lib = Qt5::Concurrent;Qt5::Core;Qt5::Gui;Qt5::Widgets;Qt5::Network;Qt5::OpenGL;Qt5::PrintSupport;Qt5::Svg;Qt5::Xml;Qt5::DataVisualization Qt include = /usr/include/qt5/;/usr/include/qt5/QtConcurrent;/usr/include/qt5/QtCore;/usr/lib64/qt5//mkspecs/linux-g++;/usr/include/qt5/QtGui;/usr/include/qt5/QtWidgets;/usr/include/qt5/QtNetwork;/usr/include/qt5/QtOpenGL;/usr/include/qt5/QtPrintSupport;/usr/include/qt5/QtSvg;/usr/include/qt5/QtXml;/usr/include/qt5/QtDataVisualization QWT version = 6.2.0 (0x60200) QWT lib = /usr/lib64/libqwt-qt5.so QWT include = /usr/include/qt5/qwt qwtplot3d lib = qwtplot3d include = qtmml lib = /usr/lib64/libmml.so qtmml include = /usr/include/qt5/libmml-qt5 SBW version = SBW lib = //usr/lib64/libSBW.so SBW include = /usr/include libSEDML version = 2.0.33 libSEDML lib = /lib64/libsedml.so libSEDML include = /usr/include Combine version = 0.2.20 Combine lib = /usr/lib64/libCombine.so.0.2.20;z;sbml;Zipper;numl;sbml;xml2;bz2;z;m;dl;expat Combine include = /usr/include NativeJIT lib = NativeJIT include = NativeJIT CXX Flags = cpu_features lib = cpu_features include = OpenMP Libs = OpenMP CXX Flags = Options: COPASI_EXTUNIT = ON SBW integration = ON Model Merging = ON SEDML support = ON Combine Archive support = ON SDE support = ON GPROF support = OFF UNDO framework = ON Versioning framework = OFF Provenance framework = OFF Analytics Task = OFF Time Sensitivities task = ON JIT Compilation = OFF OpenMP = OFF CXX Flags = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC Additional Defines = Linux;HAVE_F2C_H;LINUX Language Bindings: SWIG = /usr/bin/swig .NET Bindings = OFF Java Bindings = OFF Python Bindings = ON Perl Bindings = OFF Octave Bindings = OFF R Bindings = OFF Building: COPASI SE = ON COPASI UI = ON C++ Examples = OFF SBML TestRunner = OFF Franks TestRunner = OFF Semantic Testsuite = OFF Stochastic Testsuite = OFF Steady State TestRunner = OFF MCA TestRunner = OFF ----------------------------------------------------------- -- Configuring done (4.3s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP COPASI_OVERWRITE_USE_LAPACK CSHARP_COMPILER ENABLE_COPASI_SEDML ENABLE_USE_MATH_CONTAINER ENABLE_USE_SBMLUNIT ENABLE_WITH_MERGEMODEL QT_QMAKE_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 + /usr/bin/cmake --build . -j2 --verbose Change Dir: '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -B/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/CMakeFiles /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/depend /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CMakeFiles/libCOPASISE-core.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' gmake[2]: Nothing to be done for 'copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 0%] Built target binding_python_swig gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CInfo.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CInfo.cpp:7: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CBiologicalDescription.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CBiologicalDescription.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:110:23: warning: ‘virtual std::string CODEExporter::setConcentrationName(const std::string&)’ was hidden [-Woverloaded-virtual=] 110 | virtual std::string setConcentrationName(const std::string & objName); | ^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.h:48:15: note: by ‘std::string CODEExporterC::setConcentrationName(const CModelEntity::Status&, size_t*, size_t)’ 48 | std::string setConcentrationName(const CModelEntity::Status & status, size_t n[], size_t dependent); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:58:16: warning: ‘virtual bool CODEExporter::exportTitleData(const CModel*, std::ostream&)’ was hidden [-Woverloaded-virtual=] 58 | virtual bool exportTitleData(const CModel* copasiModel, std::ostream & os); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.h:36:16: note: by ‘virtual bool CODEExporterBM::exportTitleData(const CDataModel*, std::ostream&)’ 36 | virtual bool exportTitleData(const CDataModel* pDataModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:58:16: warning: ‘virtual bool CODEExporter::exportTitleData(const CModel*, std::ostream&)’ was hidden [-Woverloaded-virtual=] 58 | virtual bool exportTitleData(const CModel* copasiModel, std::ostream & os); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.h:38:16: note: by ‘virtual bool CODEExporterXPPAUT::exportTitleData(const CDataModel*, std::ostream&)’ 38 | virtual bool exportTitleData(const CDataModel* pDataModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:74: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:449:56: required from here 449 | static_cast< CTrajectoryTask * >(&mData.pTaskList->operator[]("Time-Course"))->load(inbuf); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::openCombineArchive(const std::string&, CProcessReport*, const bool&, const SedmlImportOptions*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2223:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2223 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2250:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2250 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2268:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2268 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2072:8: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2072 | bool result = true; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::importSEDML(const std::string&, CProcessReport*, const bool&, const SedmlImportOptions*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2395:17: warning: unused variable ‘pSEDMLDocument’ [-Wunused-variable] 2395 | SedDocument * pSEDMLDocument = NULL; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2399:18: warning: unused variable ‘pSBMLDocument’ [-Wunused-variable] 2399 | SBMLDocument * pSBMLDocument = NULL; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2400:20: warning: unused variable ‘pLol’ [-Wunused-variable] 2400 | CListOfLayouts * pLol = NULL; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2401:29: warning: unused variable ‘pLotList’ [-Wunused-variable] 2401 | COutputDefinitionVector * pLotList = NULL; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::exportSEDML(const std::string&, bool, int, int, bool, bool, CProcessReport*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.cpp:2593:17: warning: unused variable ‘pOrigSEDMLDocument’ [-Wunused-variable] 2593 | SedDocument * pOrigSEDMLDocument = NULL; | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CBiologicalDescription.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:219:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 219 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:214:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 214 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.cpp:436:1: warning: when initialized here [-Wreorder] 436 | CMIRIAMResource::CMIRIAMResource(const std::string & name, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const CMIRIAMResource&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:219:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 219 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:214:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 214 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.cpp:448:1: warning: when initialized here [-Wreorder] 448 | CMIRIAMResource::CMIRIAMResource(const CMIRIAMResource & src, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const CCopasiParameterGroup&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:219:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 219 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:214:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 214 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.cpp:460:1: warning: when initialized here [-Wreorder] 460 | CMIRIAMResource::CMIRIAMResource(const CCopasiParameterGroup & group, | ^~~~~~~~~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModified.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModified.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModified.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModified.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp: In function ‘void addXmlNodeToGraph(CRDFGraph&, XMLNode&, CRDFSubject&, const std::string&, const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 792 | for (int i = 0; i < current.getNumChildren(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp:799:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 799 | for (int i = 0; i < current.getNumChildren(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp: In static member function ‘static CRDFGraph* CRDFGraph::fromString(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp:844:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 844 | for (int i = 0; i < desc.getNumChildren(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp: In member function ‘XMLNode* TreeNode::createNode()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraph.cpp:916:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 916 | if (pos == std::string::npos) | ~~~~^~~~~~~~~~~~~~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraphConverter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFGraphConverter.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFLiteral.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFNode.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFObject.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFParser.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFPredicate.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFSubject.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFTriplet.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFUtilities.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRDFWriter.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CRaptorInit.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArrayElementReference.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArrayElementReference.cpp:7: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CCommonName.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CCore.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectMap.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectMap.cpp: In member function ‘void CDataObjectMap::objectRenamed(CDataObject*, const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectMap.cpp:301:16: warning: unused variable ‘success’ [-Wunused-variable] 301 | bool success = (itMap->second.erase(pObject) > 0); | ^~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataString.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataTimer.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CObjectInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CObjectInterface.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:54: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 54 | #pragma omp critical (cregisteredcommonname_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:68: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 68 | #pragma omp critical (cregisteredcommonname_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:78: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 78 | #pragma omp critical (cregisteredcommonname_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:86: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 86 | #pragma omp critical (cregisteredcommonname_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRegisteredCommonName.cpp:92: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 92 | #pragma omp critical (cregisteredcommonname_access) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CObjectInterface.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CObjectInterface.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h: In constructor ‘CRootContainer::CRootContainer(const bool&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:82:23: warning: ‘CRootContainer::mpUnitDefinitionList’ will be initialized after [-Wreorder] 82 | CUnitDefinitionDB * mpUnitDefinitionList; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:80:23: warning: ‘CConfigurationFile* CRootContainer::mpConfiguration’ [-Wreorder] 80 | CConfigurationFile* mpConfiguration; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.cpp:49:1: warning: when initialized here [-Wreorder] 49 | CRootContainer::CRootContainer(const bool & withGUI) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h: In constructor ‘CConfigurationFile::CConfigurationFile(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h:509:10: warning: ‘CConfigurationFile::mpValidateUnits’ will be initialized after [-Wreorder] 509 | bool * mpValidateUnits; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h:498:27: warning: ‘CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity’ [-Wreorder] 498 | CCopasiParameterGroup * mpDisplayIssueSeverity; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.cpp:115:1: warning: when initialized here [-Wreorder] 115 | CConfigurationFile::CConfigurationFile(const std::string & name, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h: In constructor ‘CConfigurationFile::CConfigurationFile(const CConfigurationFile&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h:509:10: warning: ‘CConfigurationFile::mpValidateUnits’ will be initialized after [-Wreorder] 509 | bool * mpValidateUnits; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.h:498:27: warning: ‘CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity’ [-Wreorder] 498 | CCopasiParameterGroup * mpDisplayIssueSeverity; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CConfigurationFile.cpp:148:1: warning: when initialized here [-Wreorder] 148 | CConfigurationFile::CConfigurationFile(const CConfigurationFile & src, | ^~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/CLocaleString.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptionParser.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CEvaluationNodeNormalizer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CEvaluationNodeNormalizer.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CEvaluationNodeNormalizer.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalBase.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalCall.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalChoice.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalChoiceLogical.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalFraction.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalFunction.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalGeneralPower.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalItem.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalItemPower.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLcm.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogicalItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySetOfSets(const TemplateSetOfSets&, TemplateSetOfSets&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp:39:16: required from here 39 | copySetOfSets(src.mChoices, this->mChoices); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 530 | bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySetOfSets(const TemplateSetOfSets&, TemplateSetOfSets&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp:41:16: required from here 41 | copySetOfSets(src.mAndSets, this->mAndSets); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 530 | bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp:216:18: required from here 216 | copySet((*it).first, tmpSet); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.cpp:494:22: required from here 494 | copySet((*it2).first, tmpSet); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalProduct.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalProduct.cpp: In copy constructor ‘CNormalProduct::CNormalProduct(const CNormalProduct&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalProduct.cpp:73:12: warning: unused variable ‘result’ [-Wunused-variable] 73 | bool result = this->mItemPowers.insert(pDestItemPower).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalSum.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalSum.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalSum.cpp: In copy constructor ‘CNormalSum::CNormalSum(const CNormalSum&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalSum.cpp:93:12: warning: unused variable ‘tmpRes’ [-Wunused-variable] 93 | bool tmpRes = mProducts.insert(new CNormalProduct(*pTmpProduct)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalSum.cpp:102:12: warning: unused variable ‘tmpRes’ [-Wunused-variable] 102 | bool tmpRes = mFractions.insert(new CNormalFraction(**it2)).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/ConvertToCEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp: In static member function ‘static CNormalFraction* CNormalTranslation::normAndSimplifyReptdly(const CEvaluationNode*, unsigned int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp:175:20: warning: unused variable ‘pFraction’ [-Wunused-variable] 175 | CNormalFraction* pFraction = dynamic_cast(base0); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp: In static member function ‘static CEvaluationNode* CNormalTranslation::newCancel(const CEvaluationNode*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.cpp:4076:34: warning: unused variable ‘pChild2’ [-Wunused-variable] 4076 | const CEvaluationNode* pChild2 = dynamic_cast(pChild1->getSibling()); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:59: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2650:44: required from here 2650 | CNormalLogical::copySet((*it).first, tmpSet); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2660:44: required from here 2660 | CNormalLogical::copySet((*it2).first, tmpSet); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalTranslation.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:32: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:55: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:65: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp: In function ‘bool contains_necessary_mass_action_elements(const CDataVector&, const CNormalProduct*, const CModel*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:1231:25: warning: unused variable ‘pDatamodel’ [-Wunused-variable] 1231 | const CDataModel* pDatamodel = dynamic_cast(pModel->getObjectParent()); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp: In function ‘normalize_variable_names(CNormalBase*, std::map, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:271:54: warning: ‘this’ pointer is null [-Wnonnull] 271 | normalize_variable_names(&pChoice->getCondition(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalChoice.h:46:21: note: in a call to non-static member function ‘CNormalChoice::getCondition()’ 46 | CNormalLogical& getCondition(); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:272:59: warning: ‘this’ pointer is null [-Wnonnull] 272 | normalize_variable_names(&pChoice->getTrueExpression(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalChoice.h:49:22: note: in a call to non-static member function ‘CNormalChoice::getTrueExpression()’ 49 | CNormalFraction& getTrueExpression(); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/compare_utilities.cpp:273:60: warning: ‘this’ pointer is null [-Wnonnull] 273 | normalize_variable_names(&pChoice->getFalseExpression(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/compareExpressions/CNormalChoice.h:52:22: note: in a call to non-static member function ‘CNormalChoice::getFalseExpression()’ 52 | CNormalFraction& getFalseExpression(); | ^~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionMethod.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionProblem.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionProblem.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionProblem.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CCrossSectionProblem&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionProblem.cpp:95:21: warning: unused variable ‘pDataModel’ [-Wunused-variable] 95 | const CDataModel* pDataModel = o.getObjectDataModel(); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTree.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeNode.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTree.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTree.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeNode.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternTreeNode.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMAlgorithm.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMMethod.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMProblem.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxMode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauLine.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxMode.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxMode.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrix.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrixColumn.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrix.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrix.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrixColumn.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrixColumn.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CStepMatrixColumn.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauLine.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauLine.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauLine.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauMatrix.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CFluxScore.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauLine.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauMatrix.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CTableauMatrix.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CZeroSet.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationParser_yacc.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from CEvaluationParser.ypp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationLexer_lex.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /io/build-system/git/COPASI.release/copasi/function/CEvaluationLexer.lpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp: In member function ‘CIssue CFunctionParameterMap::setCallParameter(std::string, const CDataObject*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp:171:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 171 | switch (pFunctionParameter->getUsage()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp: In member function ‘CIssue CFunctionParameterMap::addCallParameter(std::string, const CDataObject*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.cpp:217:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 217 | switch (pFunctionParameter->getUsage()) | ^ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CDerive.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CDerive.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CDerive.cpp: In member function ‘CEvaluationNode* CDerive::deriveBranch(const CEvaluationNode*, const CDataObject*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CDerive.cpp:508:25: warning: unused variable ‘tmpFunction’ [-Wunused-variable] 508 | const CFunction * tmpFunction = dynamic_cast(pENCall->getCalledTree()); | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.cpp: In member function ‘bool CEvaluationNode::operator<(const CEvaluationNode&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.cpp:863:10: warning: enumeration value ‘UNIT’ not handled in switch [-Wswitch] 863 | switch (mainType()) | ^ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.cpp:617: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeChoice.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeChoice.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeChoice.cpp:276: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp: In member function ‘virtual ASTNode* CEvaluationNodeConstant::toAST(const CDataModel*, int, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 238 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeConstant.cpp:271: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeDelay.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeDelay.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeDelay.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeDelay.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeDelay.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp: In member function ‘virtual ASTNode* CEvaluationNodeFunction::toAST(const CDataModel*, int, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1192 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1192:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp: In member function ‘virtual std::string CEvaluationNodeFunction::getMMLString(const std::vector >&, bool, const std::vector > >&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1646 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.cpp:1646:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp: In constructor ‘CEvaluationNodeLogical::CEvaluationNodeLogical(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 53 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CIssue CEvaluationNodeLogical::compile()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 127 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:127:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CValidatedUnit CEvaluationNodeLogical::getUnit(const CMathContainer&, const std::vector&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 427 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:427:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CValidatedUnit CEvaluationNodeLogical::setUnit(const CMathContainer&, const std::map&, std::map&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 464 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:464:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp: In static member function ‘static CEvaluationNode* CEvaluationNodeLogical::fromAST(const ASTNode*, const std::vector&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 565 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:565:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:499:10: warning: unused variable ‘i’ [-Wunused-variable] 499 | size_t i = 0; | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeLogical.cpp:685: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp: In constructor ‘CEvaluationNodeNumber::CEvaluationNodeNumber(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 51 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp: In member function ‘virtual ASTNode* CEvaluationNodeNumber::toAST(const CDataModel*, int, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 240 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeNumber.cpp:275: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp: In constructor ‘CEvaluationNodeObject::CEvaluationNodeObject(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 61 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual CIssue CEvaluationNodeObject::compile()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 131 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:131:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual const CCopasiNode >::Data& CEvaluationNodeObject::getData() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 335 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:335:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual std::string CEvaluationNodeObject::getInfix(const std::vector >&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 362 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:362:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp: In member function ‘void CEvaluationNodeObject::setObjectValuePtr(double*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 569 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeObject.cpp:569:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp: In static member function ‘static CEvaluationNode* CEvaluationNodeOperator::fromAST(const ASTNode*, const std::vector&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:419:10: warning: unused variable ‘i’ [-Wunused-variable] 419 | size_t i = 0, iMax = children.size(); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp: In member function ‘virtual ASTNode* CEvaluationNodeOperator::toAST(const CDataModel*, int, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 548 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:548:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1555: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp: In member function ‘virtual std::string CEvaluationNodeOperator::getMMLString(const std::vector >&, bool, const std::vector > >&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1567 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeOperator.cpp:1567:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp: In constructor ‘CEvaluationNodeStructure::CEvaluationNodeStructure(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 40 | switch (subType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeUnit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeUnit.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeVariable.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeVariable.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeVariable.cpp:118: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeVector.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeWhiteSpace.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeVector.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeWhiteSpace.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/copasi.h:55, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp: In member function ‘bool CEvaluationTree::setTree(const ASTNode&, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:635:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 635 | switch (TargetType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:619:20: warning: unused variable ‘pErrorNode’ [-Wunused-variable] 619 | CEvaluationNode *pErrorNode = NULL; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp: In static member function ‘static CEvaluationNode* CEvaluationTree::fromAST(const ASTNode*, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_END_OF_CORE’ not handled in switch [-Wswitch] 684 | switch (itNode->getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_RATE_OF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CSYMBOL_FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_NORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_UNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BERNOULLI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BINOMIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CAUCHY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CHISQUARE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_EXPONENTIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_GAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LAPLACE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LOGNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_POISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_RAYLEIGH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SELECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIXROW’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_DETERMINANT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_TRANSPOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SCALAR_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_OUTER_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LOGICAL_EXISTS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LOGICAL_FORALL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MEAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MEDIAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MODE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MOMENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_SDEV’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_VARIANCE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MOMENTABOUT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_SUM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_LIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_TENDSTO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_GCD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_CONJUGATE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_ARG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_REAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_IMAGINARY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_LCM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_EQUIVALENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_APPROX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_FACTOROF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_INT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_DIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_PARTIALDIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_LOWLIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_UPLIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_DIVERGENCE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_GRAD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_CURL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_LAPLACIAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_LIST’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_UNION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_INTERSECT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_IN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_PRSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTPRSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SETDIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_CARD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_CARTESIANPRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANT_IMAGINARYI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_INTEGERS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_REALS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_RATIONALS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_NATURALNUMBERS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_COMPLEXES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_PRIMES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_EMPTYSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_EULERGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_INTERVAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_INVERSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_CONDITION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DECLARE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_COMPOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_IDENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_CODOMAIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_IMAGE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAINOFAPPLICATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.cpp: In member function ‘void CExpression::initObjects()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.cpp:61:22: warning: unused variable ‘pObject’ [-Wunused-variable] 61 | CObjectInterface * pObject = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.cpp:227: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp: In static member function ‘static void CFunctionAnalyzer::constructCallParameters(const CFunctionParameters&, std::vector&, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp:1197:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1197 | switch (role) | ^ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp: In static member function ‘static void CFunctionAnalyzer::constructCallParametersActualValues(std::vector&, const CReaction*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionAnalyzer.cpp:1229:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1229 | switch (role) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.cpp: In member function ‘size_t CFunctionParameters::findParameterByName(const std::string&, const CFunctionParameter**) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.cpp:199:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 199 | if (ppFunctionParameter != NULL) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.cpp:195:10: warning: unused variable ‘imax’ [-Wunused-variable] 195 | size_t imax = mParameters.size(); | ^~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CKinFunction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CKinFunction.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CKinFunction.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CMassAction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CMassAction.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CMassAction.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CMassAction.cpp:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CNodeK.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CNodeK.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/FunctionDB.xml.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/FunctionDB.xml.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/FunctionDB.xml.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/FunctionDB.xml.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/FunctionDB.xml.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CNodeK.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CNodeK.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CAbstractLayoutInterface.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLBase.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CCopasiSpringLayout.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLColorDefinition.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLColorDefinition.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLCurve.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLDefaultStyles.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLEllipse.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLDefaultStyles.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLDefaultStyles.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLEllipse.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLDefaultStyles.h:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLEllipse.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLEllipse.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalStyle.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalStyle.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalStyle.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.cpp:175: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.cpp:176: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientStop.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientStop.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientStops.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientStops.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientStops.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.cpp: In member function ‘RenderGroup* CLGroup::toSBML(unsigned int, unsigned int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.cpp:884:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 884 | int result; | ^~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLImage.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLImage.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLImageTexturizer.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.cpp:63: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLayoutRenderer.cpp:67: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLinearGradient.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLinearGradient.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLinearGradient.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* CLLocalRenderInformation::toSBML(unsigned int, unsigned int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.cpp:201:11: warning: unused variable ‘result’ [-Wunused-variable] 201 | int result = pLRI->addStyle(pStyle); | ^~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalStyle.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalStyle.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLPolygon.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLPolygon.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLPolygon.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLPolygon.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRadialGradient.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRadialGradient.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRadialGradient.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRectangle.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRectangle.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRectangle.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRectangle.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRelAbsVector.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCubicBezier.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCurve.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderFlattener.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCurve.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderFlattener.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderFlattener.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCurve.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCurve.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.cpp: In member function ‘void CLRenderInformationBase::addSBMLAttributes(RenderInformationBase*) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.cpp:445:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 445 | int result; | ^~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderPoint.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLText.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLText.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLText.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLText.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLUnresolvedReferenceException.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutEngine.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutInitializer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutInitializer.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutInitializer.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutState.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayoutState.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.cpp: In static member function ‘static CLayout* SBMLDocumentLoader::createLayout(const Layout&, const std::map, std::__cxx11::basic_string >&, std::map, std::__cxx11::basic_string >&, const std::map, std::__cxx11::basic_string >&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.cpp:272:10: warning: unused variable ‘count’ [-Wunused-variable] 272 | size_t count = idToKeyMap.size() + globalIdToKeyMap.size(); | ^~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/utility_classes.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp: In member function ‘int CLNAMethod::calculateCovarianceMatrixReduced()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.cpp:303:21: warning: unused variable ‘pJacobian’ [-Wunused-variable] 303 | const C_FLOAT64 * pJacobian = mJacobianReduced.array(); | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAProblem.cpp:91:75: required from here 91 | pSubTask = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.cpp [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapProblem.cpp [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapProblem.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapProblem.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapProblem.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataVectorReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:206:10: required from ‘CDataVectorReference* CDataContainer::addVectorReference(const std::string&, CType&, const CFlags&) [with CType = CVector; std::string = std::__cxx11::basic_string]’ 206 | return new CDataVectorReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.cpp:117:21: required from here 117 | addVectorReference("Exponents", mExponents, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:210:25: note: by ‘CDataObject* CDataVectorReference::getObject(const CCommonName&) [with CType = CVector]’ 210 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CJitCompiler.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CJitCompiler.cpp:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CJitCompilerImplementation.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CJitExpression.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CJitCompilerImplementation.cpp:9: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp: In constructor ‘CMathContainer::CMathContainer()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:315:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct CMathContainer::sSize’; use assignment or value-initialization instead [-Wclass-memaccess] 315 | memset(&mSize, 0, sizeof(mSize)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:58:10: note: ‘struct CMathContainer::sSize’ declared here 58 | struct sSize | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp: In constructor ‘CMathContainer::CMathContainer(CModel&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:417:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct CMathContainer::sSize’; use assignment or value-initialization instead [-Wclass-memaccess] 417 | memset(&mSize, 0, sizeof(mSize)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:58:10: note: ‘struct CMathContainer::sSize’ declared here 58 | struct sSize | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp: In member function ‘void CMathContainer::createSynchronizeInitialValuesSequence()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:2578:20: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 2578 | switch (pObject->getSimulationType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp: In member function ‘void CMathContainer::createApplyInitialValuesSequence()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:2739:20: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 2739 | switch (pObject->getSimulationType()) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDelay.h:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp: In member function ‘std::string CMathDependencyGraph::getDOTNodeId(const CObjectInterface*) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘Noise’ not handled in switch [-Wswitch] 646 | switch (pMathObject->getValueType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘ParticleNoise’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘DelayValue’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘DelayLag’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘TransitionTime’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyGraph.cpp:646:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNodeIterator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNode.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDependencyNodeIterator.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDerive.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDerive.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDerive.cpp: In member function ‘void CMathDerive::initOneVar(size_t, size_t)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathDerive.cpp:41:16: warning: unused variable ‘pVMO’ [-Wunused-variable] 41 | CMathObject* pVMO = mpContainer->getMathObject(&mpContainer->getValues()[var]); | ^~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEnum.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.h: In copy constructor ‘CMathEventQueue::CAction::CAction(const CMathEventQueue::CAction&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.h:190:23: warning: ‘CMathEventQueue::CAction::mpPriority’ will be initialized after [-Wreorder] 190 | const C_FLOAT64 * mpPriority; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.h:185:26: warning: ‘CVector CMathEventQueue::CAction::mValues’ [-Wreorder] 185 | CVector< C_FLOAT64 > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp:85:1: warning: when initialized here [-Wreorder] 85 | CMathEventQueue::CAction::CAction(const CAction & src): | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp: In constructor ‘CMathEventQueue::CAction::CAction(CMathEvent*, CMathEventQueue*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEventQueue.cpp:103:10: warning: enumeration value ‘Stop’ not handled in switch [-Wswitch] 103 | switch (pEvent->getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp: In static member function ‘static CEvaluationNode* CMathEvent::CTrigger::compileLE(const CEvaluationNode*, const std::vector&, const CMath::Variables&, CRootProcessor*&, CMathContainer&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 989 | switch (pTriggerNode->subType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.cpp:989:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_construct.h:61, from /usr/include/c++/15/bits/stl_tempbuf.h:61, from /usr/include/c++/15/memory:68, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:18: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp: In member function ‘virtual CIssue CMathExpression::compile()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 285 | switch ((*it)->subType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathHistory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathHistory.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathHistory.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::compile(CMathContainer&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:643:10: warning: enumeration value ‘DelayValue’ not handled in switch [-Wswitch] 643 | switch (mValueType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:643:10: warning: enumeration value ‘DelayLag’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::createIntensiveValueExpression(const CMetab*, CMathContainer&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:1833:22: warning: unused variable ‘pNumber’ [-Wunused-variable] 1833 | CObjectInterface * pNumber = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:1834:22: warning: unused variable ‘pCompartment’ [-Wunused-variable] 1834 | CObjectInterface * pCompartment = NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::createExtensiveValueExpression(const CMetab*, CMathContainer&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:1868:22: warning: variable ‘pIntensiveValue’ set but not used [-Wunused-but-set-variable] 1868 | CObjectInterface * pIntensiveValue = NULL; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathObject.cpp:1869:22: warning: variable ‘pCompartment’ set but not used [-Wunused-but-set-variable] 1869 | CObjectInterface * pCompartment = NULL; | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathReaction.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqParser_yacc.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from CChemEqParser.ypp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqParser_lex.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /raid/shoops/git/COPASI/copasi/model/CChemEqParser.lpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CMIRIAMResource.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CConstants.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CReference.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEq.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEq.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEq.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp: In member function ‘void CAnnotation::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CAnnotation.cpp:160:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 160 | switch (type) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqElement.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEq.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEq.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqElement.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqElement.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqElement.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqParser.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqInterface.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp: In static member function ‘static void CMMLOutput::writeDifferentialEquations(std::ostream&, CModel*, bool, bool, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMMLOutput.cpp:284:8: warning: variable ‘hasContents’ set but not used [-Wunused-but-set-variable] 284 | bool hasContents = false; | ^~~~~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelAnalyzer.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelAnalyzer.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:61: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelAnalyzer.cpp: In member function ‘CReactionResult CModelAnalyzer::checkReaction(const CReaction*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelAnalyzer.cpp:196:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 196 | switch (role) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h: In constructor ‘CModel::CModel(CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1218:86: warning: ‘CModel::mReactionsPerSpecies’ will be initialized after [-Wreorder] 1218 | std::map < const CMetab *, std::set< std::pair< const CReaction *, C_FLOAT64 > > > mReactionsPerSpecies; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: warning: ‘CDataVectorN CModel::mValues’ [-Wreorder] 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:202:1: warning: when initialized here [-Wreorder] 202 | CModel::CModel(CDataContainer* pParent): | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp: In member function ‘bool CModel::handleUnusedMetabolites()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:928:23: warning: variable ‘pStoiEnd’ set but not used [-Wunused-but-set-variable] 928 | C_FLOAT64 * pStoi, *pStoiEnd, *pRowEnd; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:2556: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:2558: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp: In function ‘const CObjectInterface* getDependentOrNull(const std::map&, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:2577:22: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 2577 | if (it->second == index) return it->first; | ~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:2597:85: required from here 2597 | const CFitTask* task = dynamic_cast(&dataModel->getTaskList()->operator[]("Parameter Estimation")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp: In member function ‘void CModel::updateInitialValues(std::set&, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:3418:8: warning: unused variable ‘success’ [-Wunused-variable] 3418 | bool success = compileIfNecessary(NULL); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataMatrixReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:213:10: required from ‘CDataMatrixReference* CDataContainer::addMatrixReference(const std::string&, CType&, const CFlags&) [with CType = CMatrix; std::string = std::__cxx11::basic_string]’ 213 | return new CDataMatrixReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:3160:21: required from here 3160 | addMatrixReference("Stoichiometry", mStoi, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:271:25: note: by ‘CDataObject* CDataMatrixReference::getObject(const CCommonName&) [with CType = CMatrix]’ 271 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataMatrixReference’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:213:10: required from ‘CDataMatrixReference* CDataContainer::addMatrixReference(const std::string&, CType&, const CFlags&) [with CType = CLinkMatrixView; std::string = std::__cxx11::basic_string]’ 213 | return new CDataMatrixReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.cpp:3162:21: required from here 3162 | addMatrixReference("Link Matrix", mLView, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:271:25: note: by ‘CDataObject* CDataMatrixReference::getObject(const CCommonName&) [with CType = CLinkMatrixView]’ 271 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelExpansion.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelExpansion.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelExpansion.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp: In member function ‘virtual CUndoObjectInterface* CModelParameterSet::insert(const CData&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:84:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 84 | switch (CModelParameter::TypeNames.toEnum(data.getProperty(CData::OBJECT_TYPE).toString(), CModelParameter::Type::unknown)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp: In constructor ‘CModelParameterSet::CModelParameterSet(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:150:19: warning: base ‘CAnnotation’ will be initialized after [-Wreorder] 150 | mpReactions(NULL) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:150:19: warning: base ‘CModelParameterGroup’ [-Wreorder] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:139:1: warning: when initialized here [-Wreorder] 139 | CModelParameterSet::CModelParameterSet(const std::string & name, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp: In constructor ‘CModelParameterSet::CModelParameterSet(const CModelParameterSet&, const CDataContainer*, const bool&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:185:19: warning: base ‘CAnnotation’ will be initialized after [-Wreorder] 185 | mpReactions(NULL) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:185:19: warning: base ‘CModelParameterGroup’ [-Wreorder] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:173:1: warning: when initialized here [-Wreorder] 173 | CModelParameterSet::CModelParameterSet(const CModelParameterSet & src, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp: In constructor ‘CModelParameterSet::CModelParameterSet(CModel*, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:217:19: warning: base ‘CAnnotation’ will be initialized after [-Wreorder] 217 | mpReactions(NULL) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:217:19: warning: base ‘CModelParameterGroup’ [-Wreorder] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.cpp:206:1: warning: when initialized here [-Wreorder] 206 | CModelParameterSet::CModelParameterSet(CModel * pModel, | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h: In constructor ‘CModelEntity::CModelEntity(const std::string&, const CDataContainer*, const std::string&, const CFlags&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:477:20: warning: ‘CModelEntity::mpModel’ will be initialized after [-Wreorder] 477 | mutable CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:458:15: warning: ‘std::string CModelEntity::mUnitExpression’ [-Wreorder] 458 | std::string mUnitExpression; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.cpp:173:1: warning: when initialized here [-Wreorder] 173 | CModelEntity::CModelEntity(const std::string & name, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h: In constructor ‘CModelEntity::CModelEntity(const CModelEntity&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:477:20: warning: ‘CModelEntity::mpModel’ will be initialized after [-Wreorder] 477 | mutable CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:458:15: warning: ‘std::string CModelEntity::mUnitExpression’ [-Wreorder] 458 | std::string mUnitExpression; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.cpp:200:1: warning: when initialized here [-Wreorder] 200 | CModelEntity::CModelEntity(const CModelEntity & src, | ^~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CObjectLists.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CObjectLists.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CChemEqElement.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp: In member function ‘void CMoiety::initObjects()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.cpp:122:17: warning: unused variable ‘pObject’ [-Wunused-variable] 122 | CDataObject * pObject = addObjectReference("Amount", mIAmount, CDataObject::ValueDbl); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp: In member function ‘std::string CReaction::getReactionScheme() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.cpp:2347:15: warning: unused variable ‘pModel’ [-Wunused-variable] 2347 | CDataModel* pModel = getObjectDataModel(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp: In member function ‘CUndoData CReactionInterface::createUndoData(const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:454:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 454 | switch (framework) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:508:27: warning: unused variable ‘pObject’ [-Wunused-variable] 508 | const CDataObject * pObject = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:568:27: warning: unused variable ‘pObject’ [-Wunused-variable] 568 | const CDataObject * pObject = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp: In member function ‘std::vector > CReactionInterface::getUnitVector(size_t) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:1295:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1295 | switch (getUsage(index)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp: In member function ‘std::string CReactionInterface::getUnit(size_t) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:1347:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1347 | switch (getUsage(index)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp: In member function ‘std::string CReactionInterface::getEffectiveKineticLawUnit() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:1683:10: warning: enumeration value ‘Default’ not handled in switch [-Wswitch] 1683 | switch (getEffectiveKineticLawUnitType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.cpp:1683:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesProblem.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesProblem.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesProblem.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesProblem.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesTask.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CInternalSolver.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesTask.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesTask.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesTask.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CLSODA.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CLSODAR.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp: In member function ‘int CRadau5::operator()(int*, evalF, double*, double*, double*, double*, double*, double*, int*, evalJ, int*, int*, int*, evalM, int*, int*, int*, evalO, int*, double*, int*, int*, int*, double*, int*, int*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:127:17: warning: unused variable ‘io___10’ [-Wunused-variable] 127 | static cilist io___10 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:128:17: warning: unused variable ‘io___12’ [-Wunused-variable] 128 | static cilist io___12 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:129:17: warning: unused variable ‘io___15’ [-Wunused-variable] 129 | static cilist io___15 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:130:17: warning: unused variable ‘io___17’ [-Wunused-variable] 130 | static cilist io___17 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:131:17: warning: unused variable ‘io___19’ [-Wunused-variable] 131 | static cilist io___19 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:132:17: warning: unused variable ‘io___24’ [-Wunused-variable] 132 | static cilist io___24 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:133:17: warning: unused variable ‘io___29’ [-Wunused-variable] 133 | static cilist io___29 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:134:17: warning: unused variable ‘io___31’ [-Wunused-variable] 134 | static cilist io___31 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:135:17: warning: unused variable ‘io___33’ [-Wunused-variable] 135 | static cilist io___33 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:136:17: warning: unused variable ‘io___36’ [-Wunused-variable] 136 | static cilist io___36 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:137:17: warning: unused variable ‘io___39’ [-Wunused-variable] 137 | static cilist io___39 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:138:17: warning: unused variable ‘io___43’ [-Wunused-variable] 138 | static cilist io___43 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:139:17: warning: unused variable ‘io___50’ [-Wunused-variable] 139 | static cilist io___50 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:140:17: warning: unused variable ‘io___52’ [-Wunused-variable] 140 | static cilist io___52 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:141:17: warning: unused variable ‘io___68’ [-Wunused-variable] 141 | static cilist io___68 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:142:17: warning: unused variable ‘io___72’ [-Wunused-variable] 142 | static cilist io___72 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp: In function ‘int radcor_(int*, CRadau5::evalF, double*, double*, double*, double*, double*, double*, double*, int*, CRadau5::evalJ, int*, int*, int*, CRadau5::evalM, int*, int*, CRadau5::evalO, int*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, long int*, int*, int*, int*, long int*, double*, double*, int*, int*, int*, long int*, long int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1071:20: warning: variable ‘index1’ set but not used [-Wunused-but-set-variable] 1071 | static C_LOGICAL index1, index2, index3, caljac; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1107:17: warning: unused variable ‘io___176’ [-Wunused-variable] 1107 | static cilist io___176 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1108:17: warning: unused variable ‘io___177’ [-Wunused-variable] 1108 | static cilist io___177 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1109:17: warning: unused variable ‘io___178’ [-Wunused-variable] 1109 | static cilist io___178 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1110:17: warning: unused variable ‘io___179’ [-Wunused-variable] 1110 | static cilist io___179 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1111:17: warning: unused variable ‘io___180’ [-Wunused-variable] 1111 | static cilist io___180 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1112:17: warning: unused variable ‘io___181’ [-Wunused-variable] 1112 | static cilist io___181 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:1113:17: warning: unused variable ‘io___182’ [-Wunused-variable] 1113 | static cilist io___182 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:53:14: warning: ‘c__3’ defined but not used [-Wunused-variable] 53 | static C_INT c__3 = 3; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:52:14: warning: ‘c__5’ defined but not used [-Wunused-variable] 52 | static C_INT c__5 = 5; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:51:14: warning: ‘c__1’ defined but not used [-Wunused-variable] 51 | static C_INT c__1 = 1; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/CRadau5.cpp:50:14: warning: ‘c__9’ defined but not used [-Wunused-variable] 50 | static C_INT c__9 = 9; | ^~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/Cxerrwd.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/common.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dbnorm.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dc_decsol.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dcfode.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/decsol.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dewset.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dfnorm.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dintdy.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dmnorm.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dprja.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/drcheck.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dsolsy.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/odepack++/dstoda.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.cpp:8: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.cpp:26: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 26 | #pragma omp parallel for [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CRandomContext.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CRandomContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CRandomContext.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:9831:3: warning: ‘/*’ within comment [-Wcomment] 9831 | /* ret_val = i1mach_(&mdperm[*k - 1]); */ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘doublereal d1mach_(integer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:391:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘integer’ {aka ‘int’} [-Wformat=] 391 | fprintf(stderr, "invalid argument: d1mach(%ld)\n", *i); | ~~^ ~~ | | | | | integer {aka int} | long int | %d /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘int da7sst_(integer*, integer*, integer*, doublereal*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:1090:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1090 | if (v[6] > 0. && v[6] <= emax || v[6] == 0. && v[7] == 0.) | ~~~~~~~~~~^~~~~~~~~~~~~~~ [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘int dg7itb_(doublereal*, doublereal*, doublereal*, integer*, integer*, integer*, integer*, integer*, doublereal*, doublereal*, doublereal*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:2092:41: warning: variable ‘rstrst’ set but not used [-Wunused-but-set-variable] 2092 | static integer td1, tg1, lstgst, pp1, rstrst; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘int dparck_(integer*, doublereal*, integer*, integer*, integer*, integer*, doublereal*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:6647:15: warning: unused variable ‘vn’ [-Wunused-variable] 6647 | static char vn[4 * 2 * 34] = ""; | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:6663:15: warning: unused variable ‘varnm’ [-Wunused-variable] 6663 | static char varnm[1 * 2] = ""; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:6664:15: warning: unused variable ‘sh’ [-Wunused-variable] 6664 | static char sh[1 * 2] = ""; | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘integer i1mach_(integer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:9778:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘integer’ {aka ‘int’} [-Wformat=] 9778 | fprintf(stderr, "invalid argument: i1mach(%ld)\n", *i); | ~~^ ~~ | | | | | integer {aka int} | long int | %d /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp: In function ‘integer i7mdcn_(integer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CNL2SOL.cpp:9833:43: warning: suggest parentheses around ‘-’ inside ‘<<’ [-Wparentheses] 9833 | ret_val = i1mach_(&mdperm[(0 + (0 + (*k - 1 << 2))) / 4]); | ~~~^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.cpp: In member function ‘void COptItem::updatePrerequisites(const std::vector&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.cpp:519:45: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 519 | std::vector< COptItem * >::const_iterator it = influencingIntervals.begin(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.cpp:520:45: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] 520 | std::vector< COptItem * >::const_iterator end = influencingIntervals.end(); | ^~~ [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptLog.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptLogEntry.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptLogItem.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.cpp:121: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 121 | #pragma omp parallel for [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodDE.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodDE.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodDE.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodDE.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodDE.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodEP.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodEP.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodEP.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodEP.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodEP.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGA.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGA.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGA.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGA.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGA.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGASR.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGASR.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGASR.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGASR.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodGASR.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodHookeJeeves.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodHookeJeeves.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodHookeJeeves.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodHookeJeeves.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodHookeJeeves.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.cpp: In member function ‘virtual bool COptMethodLevenbergMarquardt::optimise()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodLevenbergMarquardt.cpp:132:28: warning: variable ‘nrhs’ set but not used [-Wunused-but-set-variable] 132 | C_INT dim, starts, info, nrhs; | ^~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNL2SOL.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNL2SOL.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNL2SOL.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNL2SOL.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNelderMead.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNelderMead.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNelderMead.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNelderMead.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:107: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 107 | #pragma omp critical (ps_evaluate_continue) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:120: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 120 | #pragma omp critical (ps_evaluate_increment_counters) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:201: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 201 | #pragma omp critical (ps_move_best_value) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:343: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 343 | #pragma omp critical (ps_create_best_value) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:625: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 625 | #pragma omp parallel for schedule(runtime) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:645: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 645 | #pragma omp parallel for schedule(runtime) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodNelderMead.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp: In member function ‘bool COptMethodPS::reachedStdDeviation()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPS.cpp:481:15: warning: unused variable ‘pEnd’ [-Wunused-variable] 481 | C_FLOAT64 * pEnd = pValue + mPopulationSize; | ^~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSA.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSA.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSA.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSA.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp: In member function ‘virtual bool COptMethodPraxis::optimise()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp:100:13: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 100 | C_FLOAT64 tmp = 0.0; | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodPraxis.cpp:101:13: warning: variable ‘machep’ set but not used [-Wunused-but-set-variable] 101 | C_FLOAT64 machep, stepmx, d1, d2; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSA.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSRES.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSRES.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSRES.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSRES.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSRES.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodStatistics.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp: In member function ‘bool COptMethodSS::combination()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp:820:13: warning: variable ‘la’ set but not used [-Wunused-but-set-variable] 820 | C_FLOAT64 la; // for orders of magnitude | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSS.cpp:827:22: warning: variable ‘xprval’ set but not used [-Wunused-but-set-variable] 827 | C_FLOAT64 xnewval, xprval; // to hold temp value of "parent" in go-beyond strategy | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodStatistics.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodStatistics.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodStatistics.cpp: In member function ‘virtual bool COptMethodStatistics::optimise()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodStatistics.cpp:93:8: warning: variable ‘Continue’ set but not used [-Wunused-but-set-variable] 93 | bool Continue = true; | ^~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSteepestDescent.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSteepestDescent.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSteepestDescent.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSteepestDescent.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodSteepestDescent.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.cpp: In member function ‘int COptMethodTruncatedNewton::sFun(int*, double*, double*, double*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodTruncatedNewton.cpp:328:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 328 | for (size_t i = 0; i < mVariableSize; i++, g++) | ~~^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:51: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h: In constructor ‘COptProblem::COptProblem(const CTaskEnum::Task&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:679:13: warning: ‘COptProblem::mSolutionValue’ will be initialized after [-Wreorder] 679 | C_FLOAT64 mSolutionValue; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:674:12: warning: ‘COptProblem::sCounter COptProblem::mCounters’ [-Wreorder] 674 | sCounter mCounters; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:84:1: warning: when initialized here [-Wreorder] 84 | COptProblem::COptProblem(const CTaskEnum::Task & type, | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h: In constructor ‘COptProblem::COptProblem(const COptProblem&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:679:13: warning: ‘COptProblem::mSolutionValue’ will be initialized after [-Wreorder] 679 | C_FLOAT64 mSolutionValue; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:674:12: warning: ‘COptProblem::sCounter COptProblem::mCounters’ [-Wreorder] 674 | sCounter mCounters; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:129:1: warning: when initialized here [-Wreorder] 129 | COptProblem::COptProblem(const COptProblem & src, | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp: In member function ‘virtual void COptProblem::calculateValue()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:184:45: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 184 | std::vector< COptItem * >::const_iterator it = mpOptItems->begin(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:185:45: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] 185 | std::vector< COptItem * >::const_iterator end = mpOptItems->end(); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp: In member function ‘double COptProblem::evalMinimizeIntervals(const double&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:876:23: warning: unused variable ‘SQRT_EPSILON’ [-Wunused-variable] 876 | static const double SQRT_EPSILON = sqrt(std::numeric_limits< double >::epsilon()); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp: In member function ‘virtual bool COptProblem::setSolution(const double&, const CVector&, const bool&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:1064:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1064 | if (variables.size() != 0) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:1206:77: required from here 1206 | dynamic_cast< CDataVectorN< CCopasiTask > *>(getObjectAncestor("Vector")); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataVectorReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:206:10: required from ‘CDataVectorReference* CDataContainer::addVectorReference(const std::string&, CType&, const CFlags&) [with CType = CVector; std::string = std::__cxx11::basic_string]’ 206 | return new CDataVectorReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.cpp:355:21: required from here 355 | addVectorReference("Best Parameters", mSolutionVariables, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:210:25: note: by ‘CDataObject* CDataVectorReference::getObject(const CCommonName&) [with CType = CVector]’ 210 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp: In member function ‘double CPraxis::operator()(double, double, int, int, double*, FPraxis*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp:1097:11: warning: variable ‘seed’ set but not used [-Wunused-but-set-variable] 1097 | C_INT32 seed; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp: In member function ‘CPraxis::minfit(int, double, double*, double*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp:337:11: warning: ‘f’ may be used uninitialized [-Wmaybe-uninitialized] 337 | if (0.0 <= f) | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CPraxis.cpp:236:13: note: ‘f’ was declared here 236 | C_FLOAT64 f; | ^ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRandomSearch.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRandomSearch.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRealProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRealProblem.h:53, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRealProblem.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CRandomSearch.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp: In member function ‘int CTruncatedNewton::lmqn_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, int*, int*, int*, double*, double*, double*, double*, COptLog*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:387:13: warning: variable ‘fold’ set but not used [-Wunused-but-set-variable] 387 | C_FLOAT64 fold, oldf; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:391:9: warning: variable ‘lhyr’ set but not used [-Wunused-but-set-variable] 391 | C_INT lhyr; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:401:27: warning: variable ‘fstop’ set but not used [-Wunused-but-set-variable] 401 | C_FLOAT64 gnorm, ftest, fstop, pnorm, rteps, xnorm; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp: In member function ‘int CTruncatedNewton::lmqnbc_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, double*, double*, int*, int*, int*, int*, double*, double*, double*, double*, COptLog*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:761:13: warning: variable ‘fold’ set but not used [-Wunused-but-set-variable] 761 | C_FLOAT64 fold, oldf; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:766:9: warning: variable ‘lhyr’ set but not used [-Wunused-but-set-variable] 766 | C_INT lhyr; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:777:13: warning: variable ‘fstop’ set but not used [-Wunused-but-set-variable] 777 | C_FLOAT64 fstop, pnorm, rteps, xnorm; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp: In function ‘int initp3_(double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/CTruncatedNewton.cpp:2398:13: warning: variable ‘cond’ set but not used [-Wunused-but-set-variable] 2398 | C_FLOAT64 cond; | ^~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentFileInfo.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentFileInfo.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp: In member function ‘double CExperiment::getErrorMeanSD(const CObjectInterface*, const double&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.cpp:1669:20: warning: unused variable ‘pScale’ [-Wunused-variable] 1669 | const C_FLOAT64 *pScale = mScale.array() + it->second; | ^~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentObjectMap.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentObjectMap.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentObjectMap.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentObjectMap.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentObjectMap.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.cpp:129: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 129 | #pragma omp critical (experiment_read) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitTask.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitTask.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitTask.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptTask.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataTimer.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:347:85: required from here 347 | pTasks = dynamic_cast *>(getObjectAncestor("Vector")); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp: In member function ‘virtual bool CFitProblem::calculate()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:1085:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1085 | for (j = 0; j < kmax && Continue; j++) // For each data row; | ~~^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:1133:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1133 | for (j = 0; j < kmax && Continue; j++) // For each data row; | ~~^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:1234:34: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 1234 | auto it = mpOptItems->begin(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp: In member function ‘virtual void CFitProblem::updateContainer(const bool&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.cpp:1372:17: warning: variable ‘pExp’ set but not used [-Wunused-but-set-variable] 1372 | CExperiment * pExp = NULL; | ^~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotColors.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/CPermutation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/CPermutation.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/CPermutation.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/CRandom.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/CRandom.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/Cmt19937.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/randomGenerator/Cr250.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:8: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp:183: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 183 | #pragma omp critical (key_factory_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp:213: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 213 | #pragma omp critical(key_factory_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp:251: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 251 | #pragma omp critical (key_factory_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.cpp:278: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 278 | #pragma omp critical(key_factory_access) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h: In constructor ‘CDataHandler::CDataHandler(bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:35:37: warning: ‘CDataHandler::mAfterObjectList’ will be initialized after [-Wreorder] 35 | std::vector< CObjectInterface * > mAfterObjectList; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:34:37: warning: ‘std::vector CDataHandler::mDuringObjectList’ [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:26:1: warning: when initialized here [-Wreorder] 26 | CDataHandler::CDataHandler(bool separate) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:34:37: warning: ‘CDataHandler::mDuringObjectList’ will be initialized after [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:33:37: warning: ‘std::vector CDataHandler::mBeforeObjectList’ [-Wreorder] 33 | std::vector< CObjectInterface * > mBeforeObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:26:1: warning: when initialized here [-Wreorder] 26 | CDataHandler::CDataHandler(bool separate) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h: In copy constructor ‘CDataHandler::CDataHandler(const CDataHandler&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:35:37: warning: ‘CDataHandler::mAfterObjectList’ will be initialized after [-Wreorder] 35 | std::vector< CObjectInterface * > mAfterObjectList; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:34:37: warning: ‘std::vector CDataHandler::mDuringObjectList’ [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:40:1: warning: when initialized here [-Wreorder] 40 | CDataHandler::CDataHandler(const CDataHandler & src) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:34:37: warning: ‘CDataHandler::mDuringObjectList’ will be initialized after [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.h:33:37: warning: ‘std::vector CDataHandler::mBeforeObjectList’ [-Wreorder] 33 | std::vector< CObjectInterface * > mBeforeObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:40:1: warning: when initialized here [-Wreorder] 40 | CDataHandler::CDataHandler(const CDataHandler & src) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp: In member function ‘virtual void CDataHandler::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CDataHandler.cpp:171:10: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 171 | switch (activity) | ^ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReport.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReport.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReport.cpp: In member function ‘virtual void CReport::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReport.cpp:136:10: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 136 | switch (activity) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/COutputAssistant.cpp:723:57: required from here 723 | CCopasiTask * pTask = &pDataModel->getTaskList()->operator[]("Parameter Estimation"); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportBody.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.h: In constructor ‘CReportDefinition::CReportDefinition(const CReportDefinition&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.h:68:20: warning: ‘CReportDefinition::mPrecision’ will be initialized after [-Wreorder] 68 | unsigned C_INT32 mPrecision; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.h:60:38: warning: ‘std::vector CReportDefinition::mHeaderVector’ [-Wreorder] 60 | std::vector mHeaderVector; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.cpp:142:1: warning: when initialized here [-Wreorder] 142 | CReportDefinition::CReportDefinition(const CReportDefinition & src, | ^~~~~~~~~~~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinition.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp:77: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static REACTION_TYPE CCellDesignerImporter::reactionTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp:4885:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 4885 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static MODIFICATION_LINK_TYPE CCellDesignerImporter::modificationLinkTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp:4973:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 4973 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static MODIFICATION_TYPE CCellDesignerImporter::modificationTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp:5041:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 5041 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static SPECIES_MODIFICATION_TYPE CCellDesignerImporter::speciesModificationTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CCellDesignerImporter.cpp:10933:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 10933 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLDefaultStyles.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:71: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:80: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/bits/specfun.h:43, from /usr/include/c++/15/cmath:3913, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:97: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp: In function ‘void addSymbolComponentToUnitDefinition(UnitDefinition*, CUnit::SymbolComponent&, const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:3113:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3113 | if (unitKind != C_INVALID_INDEX && use_d_prefix) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:3118:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3118 | if (unitKind == C_INVALID_INDEX) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp: In member function ‘void CSBMLExporter::addInitialAssignmentsToModel(const CDataModel&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:3401:11: warning: unused variable ‘result’ [-Wunused-variable] 3401 | int result = model->addParameter(param); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp: In member function ‘bool CSBMLExporter::createSBMLDocument(CDataModel&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:3751:15: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 3751 | int result; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp: In static member function ‘static XMLNode* CSBMLExporter::createSBMLNotes(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:8147:31: warning: unused variable ‘tmp’ [-Wunused-variable] 8147 | int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", prefix); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.cpp:8216:27: warning: unused variable ‘tmp’ [-Wunused-variable] 8216 | int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", ""); | ^~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/ConverterASTNode.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:71: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:72: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:79: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:81: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:84: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:34: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/SBMLDocumentLoader.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:98: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:99: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp: In member function ‘void SBMLImporter::replaceAmountReferences(ConverterASTNode*, Model*, double, std::map&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:3651:43: warning: variable ‘pSpecies’ set but not used [-Wunused-but-set-variable] 3651 | ASTNode *pAvogadro = NULL, *pSpecies = NULL; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp: In member function ‘void SBMLImporter::applyConversionFactors()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.cpp:7930:25: warning: variable ‘pE’ set but not used [-Wunused-but-set-variable] 7930 | const CChemEqElement* pE = NULL; | ^~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLIncompatibility.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLReference.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp: In member function ‘void SBMLUnitSupport::importUnitsFromSBMLDocument(Model*, CModel*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:172:24: warning: unused variable ‘pUDef’ [-Wunused-variable] 172 | UnitDefinition * pUDef = NULL; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp: In member function ‘void SBMLUnitSupport::checkElementUnits(const Model*, CModel*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:1048:8: warning: variable ‘inconsistentDimensionlessUnits’ set but not used [-Wunused-but-set-variable] 1048 | bool inconsistentDimensionlessUnits = false; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:1049:8: warning: unused variable ‘defaultVolumeUsed’ [-Wunused-variable] 1049 | bool defaultVolumeUsed = false; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:1050:8: warning: unused variable ‘defaultAreaUsed’ [-Wunused-variable] 1050 | bool defaultAreaUsed = false; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUnitSupport.cpp:1051:8: warning: unused variable ‘defaultLengthUsed’ [-Wunused-variable] 1051 | bool defaultLengthUsed = false; | ^~~~~~~~~~~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUtils.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLUtils.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/StdException.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbmlunit/CSBMLunit.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbmlunit/CSBMLunitInterface.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbmlunit/Expression2PresentationMML.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbmlunit/Expression2PresentationMML.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/copasimathml.h:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbmlunit/Expression2PresentationMMLUnits.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp: In member function ‘bool CScanMethod::loop(size_t)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:574:10: warning: unused variable ‘failCounter’ [-Wunused-variable] 574 | size_t failCounter = 0; | ^~~~~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp: In member function ‘CScanItemRandom::step()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:388:22: warning: ‘Value’ may be used uninitialized [-Wmaybe-uninitialized] 388 | *mpObjectValue = Value; | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.cpp:339:13: note: ‘Value’ was declared here 339 | C_FLOAT64 Value; | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.cpp:112:34: required from here 112 | CDataVectorN< CCopasiTask >::iterator it = pDataModel->getTaskList()->begin(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.cpp:256:48: required from here 256 | (&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp:492:48: required from here 492 | (&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp: In member function ‘bool CSensMethod::initialize(CSensProblem*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensMethod.cpp:484:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 484 | switch (mpProblem->getSubTaskType()) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp:298:34: required from here 298 | CDataVectorN< CCopasiTask >::iterator it = pDataModel->getTaskList()->begin(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp: In static member function ‘static std::vector CSensProblem::getPossibleTargetFunctions(SubTaskType)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp:480:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 480 | switch (type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp: In static member function ‘static std::vector CSensProblem::getPossibleVariables(SubTaskType)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.cpp:548:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 548 | switch (type) | ^ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CEigen.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CEigen.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CEigen.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp: In member function ‘virtual bool CSensTask::process(const bool&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensTask.cpp:106:17: warning: unused variable ‘pProblem’ [-Wunused-variable] 106 | CSensProblem* pProblem = | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CEigen.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataVectorReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:206:10: required from ‘CDataVectorReference* CDataContainer::addVectorReference(const std::string&, CType&, const CFlags&) [with CType = CVector; std::string = std::__cxx11::basic_string]’ 206 | return new CDataVectorReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CEigen.cpp:177:21: required from here 177 | addVectorReference("Vector of real part of eigenvalues", mR, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:210:25: note: by ‘CDataObject* CDataVectorReference::getObject(const CCommonName&) [with CType = CVector]’ 210 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp: In member function ‘void CMCAMethod::calculateUnscaledElasticities(double)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:227:32: warning: unused variable ‘TransientDependencies’ [-Wunused-variable] 227 | const CMathDependencyGraph & TransientDependencies = mpContainer->getTransientDependencies(); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:230:17: warning: unused variable ‘pParticleFluxObjectEnd’ [-Wunused-variable] 230 | CMathObject * pParticleFluxObjectEnd = pParticleFluxObject + numReacs; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:232:17: warning: unused variable ‘pSpeciesObjectEnd’ [-Wunused-variable] 232 | CMathObject * pSpeciesObjectEnd = pSpeciesObjectStart + numMetabs; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp: In member function ‘bool CMCAMethod::calculateUnscaledConcentrationCC()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:336:9: warning: unused variable ‘N’ [-Wunused-variable] 336 | C_INT N = (C_INT) aux2.numRows(); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp: In member function ‘bool CMCAMethod::scaleMCA(const bool&, double)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.cpp:400:10: warning: unused variable ‘numReacs’ [-Wunused-variable] 400 | size_t numReacs = mpContainer->getParticleFluxes().size(); | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CState.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAProblem.cpp:103:75: required from here 103 | pSubTask = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.h:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:235: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h: In constructor ‘CNewtonMethod::CNewtonMethod(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h:92:13: warning: ‘CNewtonMethod::mTargetRate’ will be initialized after [-Wreorder] 92 | C_FLOAT64 mTargetRate; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h:91:13: warning: ‘double CNewtonMethod::mTargetDistance’ [-Wreorder] 91 | C_FLOAT64 mTargetDistance; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:54:1: warning: when initialized here [-Wreorder] 54 | CNewtonMethod::CNewtonMethod(const CDataContainer * pParent, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h: In constructor ‘CNewtonMethod::CNewtonMethod(const CNewtonMethod&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h:92:13: warning: ‘CNewtonMethod::mTargetRate’ will be initialized after [-Wreorder] 92 | C_FLOAT64 mTargetRate; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.h:91:13: warning: ‘double CNewtonMethod::mTargetDistance’ [-Wreorder] 91 | C_FLOAT64 mTargetDistance; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:83:1: warning: when initialized here [-Wreorder] 83 | CNewtonMethod::CNewtonMethod(const CNewtonMethod & src, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp: In member function ‘std::string CNewtonMethod::targetValueToString() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:679:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 679 | switch (mTargetCriterion) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:902:69: required from here 902 | dynamic_cast< CTrajectoryTask * >(&pDataModel->getTaskList()->operator[]("Time-Course")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp: In member function ‘virtual bool CNewtonMethod::initialize(const CSteadyStateProblem*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CNewtonMethod.cpp:855:23: warning: variable ‘pTrajectoryMethod’ set but not used [-Wunused-but-set-variable] 855 | CTrajectoryMethod * pTrajectoryMethod = NULL; | ^~~~~~~~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateProblem.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateProblem.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.h:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp: In member function ‘virtual void CTimeSensLsodaMethod::start()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensLsodaMethod.cpp:565:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 565 | for (i = mSystemSize + 1; i < mData.dim; ++i) | ~~^~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.h:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensMethod.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:56, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.cpp:153:84: required from here 153 | mpSteadyState = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp:56: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:65: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp: In member function ‘void CHybridMethod::calculateDerivative(CVectorCore&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.cpp:407:11: warning: unused variable ‘bal’ [-Wunused-variable] 407 | C_INT32 bal = 0; | ^~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:51: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:65: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h: In constructor ‘CHybridMethodODE45::CHybridMethodODE45(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h:361:26: warning: ‘CHybridMethodODE45::mSpeciesRateUpdateSequence’ will be initialized after [-Wreorder] 361 | CCore::CUpdateSequence mSpeciesRateUpdateSequence; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h:330:31: warning: ‘CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus’ [-Wreorder] 330 | CRungeKutta::RKMethodStatus mRKMethodStatus; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:83:1: warning: when initialized here [-Wreorder] 83 | CHybridMethodODE45::CHybridMethodODE45(const CDataContainer * pParent, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h: In constructor ‘CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h:361:26: warning: ‘CHybridMethodODE45::mSpeciesRateUpdateSequence’ will be initialized after [-Wreorder] 361 | CCore::CUpdateSequence mSpeciesRateUpdateSequence; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h:330:31: warning: ‘CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus’ [-Wreorder] 330 | CRungeKutta::RKMethodStatus mRKMethodStatus; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.cpp:141:1: warning: when initialized here [-Wreorder] 141 | CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45 & src, | ^~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:56, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionLSODAMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:56, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethod.h:65: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp: In member function ‘virtual void CHybridNextReactionRKMethod::integrateDeterministicPart(double)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridNextReactionRKMethod.cpp:96:22: warning: unused variable ‘react’ [-Wunused-variable] 96 | CHybridStochFlag * react = NULL; | ^~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:11, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:110:18: warning: ‘virtual CTrajectoryMethod::Status CTrajectoryMethod::step(const double&, const bool&)’ was hidden [-Woverloaded-virtual=] 110 | virtual Status step(const double & deltaT, const bool & final = false); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:91:37: note: by ‘virtual CTrajectoryMethod::Status CLsodaMethod2::step(const double&)’ 91 | virtual CTrajectoryMethod::Status step(const double & deltaT); | ^~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRadau5Method.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRadau5Method.cpp:8: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h: In constructor ‘CLsodaMethod2::CLsodaMethod2(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:247:9: warning: ‘CLsodaMethod2::mNumRoots’ will be initialized after [-Wreorder] 247 | C_INT mNumRoots; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:187:13: warning: ‘double CLsodaMethod2::mTime’ [-Wreorder] 187 | C_FLOAT64 mTime; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:28:1: warning: when initialized here [-Wreorder] 28 | CLsodaMethod2::CLsodaMethod2(const CDataContainer * pParent, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h: In constructor ‘CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:247:9: warning: ‘CLsodaMethod2::mNumRoots’ will be initialized after [-Wreorder] 247 | C_INT mNumRoots; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.h:187:13: warning: ‘double CLsodaMethod2::mTime’ [-Wreorder] 187 | C_FLOAT64 mTime; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:61:1: warning: when initialized here [-Wreorder] 61 | CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2 & src, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp: In member function ‘virtual CTrajectoryMethod::Status CLsodaMethod2::step(const double&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod2.cpp:150:13: warning: unused variable ‘StartTime’ [-Wunused-variable] 150 | C_FLOAT64 StartTime = mTime; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRadau5Method.cpp:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRadau5Method.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRootFinder.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRootFinder.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRootFinder.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::doOneStep()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp:431:10: warning: unused variable ‘s’ [-Wunused-variable] 431 | size_t s = mStage - 1; | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::setInitialStepSize()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp:710:13: warning: unused variable ‘absT’ [-Wunused-variable] 710 | C_FLOAT64 absT = fabs(mTLeft); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::checkRoots()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp:802:15: warning: unused variable ‘pLeftRoots’ [-Wunused-variable] 802 | C_FLOAT64 * pLeftRoots = mRootValuesLeft; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CRungeKutta.cpp:805:15: warning: unused variable ‘pRightRoots’ [-Wunused-variable] 805 | C_FLOAT64 * pRightRoots = mRootValueRight; | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochDirectMethod.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochNextReactionMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochNextReactionMethod.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochNextReactionMethod.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochNextReactionMethod.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochMethod.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp: In member function ‘bool CTauLeapMethod::updateSystem()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.cpp:365:21: warning: unused variable ‘pKEnd’ [-Wunused-variable] 365 | const C_FLOAT64 * pKEnd = pK + mNumReactions; | ^~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp: In member function ‘virtual bool CTimeSeries::compile(CObjectInterface::ContainerList)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.cpp:181:14: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 181 | switch (pObject->getSimulationType()) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h: In constructor ‘CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: ‘CTrajAdaptiveSA::mNumReactionSpecies’ will be initialized after [-Wreorder] 204 | size_t mNumReactionSpecies; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: ‘unsigned int CTrajAdaptiveSA::mMaxSteps’ [-Wreorder] 189 | unsigned C_INT32 mMaxSteps; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:44:1: warning: when initialized here [-Wreorder] 44 | CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer * pParent, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h: In constructor ‘CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: ‘CTrajAdaptiveSA::mNumReactionSpecies’ will be initialized after [-Wreorder] 204 | size_t mNumReactionSpecies; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: ‘unsigned int CTrajAdaptiveSA::mMaxSteps’ [-Wreorder] 189 | unsigned C_INT32 mMaxSteps; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajAdaptiveSA.cpp:70:1: warning: when initialized here [-Wreorder] 70 | CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA & src, | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CHybridMethodODE45.h:54, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTauLeapMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CLsodaMethod.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CTaskEnum::Task&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:211:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 211 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:206:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 206 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:48:1: warning: when initialized here [-Wreorder] 48 | CTrajectoryProblem::CTrajectoryProblem(const CTaskEnum::Task & type, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:211:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 211 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:206:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 206 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:71:1: warning: when initialized here [-Wreorder] 71 | CTrajectoryProblem::CTrajectoryProblem(const CDataContainer * pParent): | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:211:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 211 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.h:206:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 206 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryProblem.cpp:94:1: warning: when initialized here [-Wreorder] 94 | CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem & src, | ^~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.cpp:193:84: required from here 193 | mpSteadyState = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:56: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/locale:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:60: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.cpp:611:104: required from here 611 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:58:16: warning: ‘virtual bool CODEExporter::exportTitleData(const CModel*, std::ostream&)’ was hidden [-Woverloaded-virtual=] 58 | virtual bool exportTitleData(const CModel* copasiModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.h:36:16: note: by ‘virtual bool CODEExporterBM::exportTitleData(const CDataModel*, std::ostream&)’ 36 | virtual bool exportTitleData(const CDataModel* pDataModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterBM.cpp:73:94: required from here 73 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:110:23: warning: ‘virtual std::string CODEExporter::setConcentrationName(const std::string&)’ was hidden [-Woverloaded-virtual=] 110 | virtual std::string setConcentrationName(const std::string & objName); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.h:48:15: note: by ‘std::string CODEExporterC::setConcentrationName(const CModelEntity::Status&, size_t*, size_t)’ 48 | std::string setConcentrationName(const CModelEntity::Status & status, size_t n[], size_t dependent); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterC.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporter.h:58:16: warning: ‘virtual bool CODEExporter::exportTitleData(const CModel*, std::ostream&)’ was hidden [-Woverloaded-virtual=] 58 | virtual bool exportTitleData(const CModel* copasiModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.h:38:16: note: by ‘virtual bool CODEExporterXPPAUT::exportTitleData(const CDataModel*, std::ostream&)’ 38 | virtual bool exportTitleData(const CDataModel* pDataModel, std::ostream & os); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tss/CODEExporterXPPAUT.cpp:71:94: required from here 71 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp: In member function ‘int CCSPMethod::isBlockDiagonal(int, int, const CMatrix&, const double&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:781:15: warning: variable ‘imax’ set but not used [-Wunused-but-set-variable] 781 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:781:21: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable] 781 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:781:27: warning: variable ‘imaxl’ set but not used [-Wunused-but-set-variable] 781 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CCSPMethod.cpp:781:34: warning: variable ‘jmaxl’ set but not used [-Wunused-but-set-variable] 781 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp: In member function ‘virtual void CILDMMethod::step(const double&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:108:9: warning: variable ‘flag_jacob’ set but not used [-Wunused-but-set-variable] 108 | C_INT flag_jacob; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:223:9: warning: variable ‘flag_schur’ set but not used [-Wunused-but-set-variable] 223 | C_INT flag_schur; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp: In member function ‘void CILDMMethod::deuflhard(int&, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:886:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 886 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:1029:13: warning: variable ‘max1’ set but not used [-Wunused-but-set-variable] 1029 | C_FLOAT64 max1; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataMatrixReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:213:10: required from ‘CDataMatrixReference* CDataContainer::addMatrixReference(const std::string&, CType&, const CFlags&) [with CType = CMatrix; std::string = std::__cxx11::basic_string]’ 213 | return new CDataMatrixReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMMethod.cpp:73:21: required from here 73 | addMatrixReference("Contribution of Species to Slow Space", mVslow, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:271:25: note: by ‘CDataObject* CDataMatrixReference::getObject(const CCommonName&) [with CType = CMatrix]’ 271 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘virtual void CILDMModifiedMethod::step(const double&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:117:9: warning: variable ‘flag_jacob’ set but not used [-Wunused-but-set-variable] 117 | C_INT flag_jacob; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:179:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 179 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:224:9: warning: variable ‘flag_schur’ set but not used [-Wunused-but-set-variable] 224 | C_INT flag_schur; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::deuflhard_metab(int&, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:508:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 508 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::newton_new(int*, int&, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:619:25: warning: variable ‘flag_newton’ set but not used [-Wunused-but-set-variable] 619 | C_INT nrhs, ok, fast, flag_newton; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::newton_for_timestep(int, double&, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:847:27: warning: variable ‘flag_newton’ set but not used [-Wunused-but-set-variable] 847 | C_INT i, iter, itermax, flag_newton; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h: In instantiation of ‘class CDataMatrixReference >’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:213:10: required from ‘CDataMatrixReference* CDataContainer::addMatrixReference(const std::string&, CType&, const CFlags&) [with CType = CMatrix; std::string = std::__cxx11::basic_string]’ 213 | return new CDataMatrixReference< CType >(name, this, reference, flag); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CILDMModifiedMethod.cpp:59:21: required from here 59 | addMatrixReference("Contribution of Species to Slow Space", mVslow, CDataObject::ValueDbl); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:141:36: warning: ‘virtual const CObjectInterface* CDataObject::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 141 | virtual const CObjectInterface * getObject(const CCommonName & cn) const override; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:193: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObjectReference.h:271:25: note: by ‘CDataObject* CDataMatrixReference::getObject(const CCommonName&) [with CType = CMatrix]’ 271 | virtual CDataObject * getObject(const CCommonName & cn) | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_mod_space(int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:407:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 407 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_fast_space(int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:465:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 465 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_fast_space_thomas(int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:523:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 523 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::sylvester(int, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.cpp:1645:9: warning: variable ‘flag_sylvester’ set but not used [-Wunused-but-set-variable] 1645 | C_INT flag_sylvester; | ^~~~~~~~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAProblem.cpp:259:88: required from here 259 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time Scale Separation Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CData.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In member function ‘bool CDataValue::operator==(const CDataValue&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:322:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 322 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In member function ‘bool CDataValue::operator!=(const CDataValue&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:362:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 362 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::allocateData(const Type&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:416:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 416 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::deleteData()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:466:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 466 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::assignData(const CDataValue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:510:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 510 | switch (rhs.mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CDataValue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:626:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 626 | switch (o.mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp: In function ‘std::istream& operator>>(std::istream&, CDataValue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CDataValue.cpp:707:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 707 | switch (i.mType) | ^ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoObjectInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoObjectInterface.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘void CUndoData::CChangeSet::add(const CUndoData::ChangeInfo&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:67:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 67 | switch (Info.type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In constructor ‘CUndoData::CUndoData(const Type&, const CUndoObjectInterface*, const size_t&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:207:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 207 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In constructor ‘CUndoData::CUndoData(const Type&, const CData&, const size_t&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:252:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 252 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::addProperty(const std::string&, const CDataValue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:320:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 320 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::addProperty(const std::string&, const CDataValue&, const CDataValue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:354:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 354 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::isSetProperty(const std::string&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:422:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 422 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::apply(const CDataModel&, CChangeSet&, const bool&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:555:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 555 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::undo(const CDataModel&, CChangeSet&, const bool&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:577:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 577 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘std::string CUndoData::getObjectDisplayName() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:649:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 649 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:666:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 666 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘std::string CUndoData::getObjectType() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:696:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 696 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::operator<(const CUndoData&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:715:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 715 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:753:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 753 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp: In member function ‘const CData& CUndoData::getData(const bool&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoData.cpp:977:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 977 | switch (mType) | ^ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoStack.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undo/CUndoStack.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser_yacc.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h:18, from CUnitParser.ypp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser_lex.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h:18, from /raid/shoops/git/COPASI/copasi/utilities/CUnitParser.lpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CBaseUnit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CBaseUnit.cpp:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CBrent.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiException.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiException.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiException.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In member function ‘virtual CData CCopasiParameter::toData() const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:105:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 105 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In member function ‘virtual void CCopasiParameter::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:185:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 185 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CCopasiParameter&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:430:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 430 | switch (o.mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In member function ‘void CCopasiParameter::createValue()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:545:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 545 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In member function ‘void CCopasiParameter::assignValidValues(const void*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:613:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 613 | switch (mType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::allocateValue(const Type&, void*&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:678:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 678 | switch (type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::assignValue(const Type&, void*&, const void*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:730:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 730 | switch (type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::allocateValidValues(const Type&, void*&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.cpp:824:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 824 | switch (type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.cpp: In member function ‘virtual void CCopasiParameterGroup::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.cpp:237:22: warning: unused variable ‘pParameter’ [-Wunused-variable] 237 | CCopasiParameter * pParameter; | ^~~~~~~~~~ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h: In constructor ‘CCopasiTask::CCopasiTask()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:524:24: warning: ‘CCopasiTask::mInitialState’ will be initialized after [-Wreorder] 524 | CVector< C_FLOAT64 > mInitialState; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:518:20: warning: ‘CMathContainer* CCopasiTask::mpContainer’ [-Wreorder] 518 | CMathContainer * mpContainer; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp:268:1: warning: when initialized here [-Wreorder] 268 | CCopasiTask::CCopasiTask() | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp: In member function ‘virtual void CCopasiTask::separate(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.cpp:694:12: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 694 | switch (activity) | ^ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTaskStatus.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CDependencyGraph.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CDirEntry.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CDirEntry.cpp:51: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp: In static member function ‘static std::string CExpressionGenerator::generate(Operation, const std::vector&, bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp:184:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for (int i = 1; i < objects.size(); ++i) | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CFlags.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CCore.h:83, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CObjectInterface.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CEnumAnnotation.h: In instantiation of ‘std::vector CEnumAnnotation::annotations() const [with Type = std::__cxx11::basic_string; Enum = CExpressionGenerator::Operation]’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CExpressionGenerator.cpp:71:36: required from here 71 | return OperationNames.annotations(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CEnumAnnotation.h:114:42: warning: loop variable ‘a’ of type ‘const std::pair, CExpressionGenerator::Operation>&’ binds to a temporary constructed from type ‘const std::pair, CExpressionGenerator::Operation>’ [-Wrange-loop-construct] 114 | for (const std::pair< Type, Enum > & a : mMap) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CEnumAnnotation.h:114:42: note: use non-reference type ‘const std::pair, CExpressionGenerator::Operation>’ to make the copy explicit or ‘const std::pair, CExpressionGenerator::Operation>&’ to prevent copying [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CIndexedPriorityQueue.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CIndexedPriorityQueue.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLeastSquareSolution.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLeastSquareSolution.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLeastSquareSolution.cpp:7: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethodCoranaWalk.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CBitPatternMethod.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp: In static member function ‘static CCopasiMethod* CMethodFactory::create(const CTaskEnum::Task&, const CTaskEnum::Method&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘RandomSearchMaster’ not handled in switch [-Wswitch] 80 | switch (methodType) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘HybridGASA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘LSODA2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘analyticsMethod’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp: In static member function ‘static CCopasiMethod* CMethodFactory::copy(const CCopasiMethod*, const CDataContainer*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘RandomSearchMaster’ not handled in switch [-Wswitch] 288 | switch (pSrc->getSubType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘HybridGASA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘LSODA2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘analyticsMethod’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProblemFactory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProblemFactory.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:193:34: required from here 193 | for (size_t i = 0; i < taskList.size(); i++) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp: In static member function ‘static FittingItem* ResultParser::parseItem(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:481:16: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 481 | if (firstLeq == -1) | ~~~~~~~~~^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CParameterEstimationUtils.cpp:488:14: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 488 | if (square == -1) | ~~~~~~~^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProblemFactory.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProblemFactory.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CReadConfig.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CReadConfig.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.h:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.h:148:19: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 148 | public std::iterator< std::forward_iterator_tag, C_FLOAT64, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/algorithm:62, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.cpp:31: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTableCell.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTaskEnum.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTaskFactory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTaskFactory.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTaskFactory.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CTaskFactory.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitComponent.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.cpp: In member function ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.cpp:46:21: warning: variable ‘pCopy’ set but not used [-Wunused-but-set-variable] 46 | CUnitDefinition * pCopy = NULL; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h: In constructor ‘CUnitParserBase::CUnitParserBase()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h:81:20: warning: ‘CUnitParserBase::mPosition’ will be initialized after [-Wreorder] 81 | unsigned C_INT32 mPosition; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.h:80:10: warning: ‘CUnit* CUnitParserBase::mpUnit’ [-Wreorder] 80 | CUnit *mpUnit; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitParser.cpp:20:1: warning: when initialized here [-Wreorder] 20 | CUnitParserBase::CUnitParserBase(): | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidatedUnit.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidatedUnit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidatedUnit.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidatedUnit.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidity.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CVersion.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidity.cpp: In member function ‘void CValidity::add(const CIssue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidity.cpp:277:10: warning: enumeration value ‘Success’ not handled in switch [-Wswitch] 277 | switch (issue.getSeverity()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidity.cpp: In member function ‘void CValidity::remove(const CIssue&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CValidity.cpp:316:10: warning: enumeration value ‘Success’ not handled in switch [-Wswitch] 316 | switch (issue.getSeverity()) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CVersion.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CluX.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CluX.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/Cmd5.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CopasiTime.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/dgemm.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/dgemm.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/dgemm.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp: In function ‘ISODateTime[abi:cxx11](tm*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp:50:24: warning: ‘%.02d’ directive writing between 2 and 11 bytes into a region of size between 8 and 18 [-Wformat-overflow=] 50 | sprintf(str, "%d-%.02d-%.02dT%.02d:%.02d:%.02d", | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp:50:20: note: directive argument in the range [-2147483647, 2147483647] 50 | sprintf(str, "%d-%.02d-%.02dT%.02d:%.02d:%.02d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp:28: In function ‘sprintf’, inlined from ‘ISODateTime[abi:cxx11](tm*)’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/utility.cpp:50:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 17 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:55: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:67: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:69: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:304:7: required from here 304 | pdelete(mpTaskList); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp: In member function ‘bool CCopasiXML::saveModel()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXML.cpp:1043:28: warning: unused variable ‘pDataModel’ [-Wunused-variable] 1043 | CDataModel * pDataModel = Assignments.getObjectDataModel(); | ^~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CExpat.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CExpat.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CExpat.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CFixLocalReactionParameters.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CFixLocalReactionParameters.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CFixLocalReactionParameters.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CGroupXML.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CGroupXML.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CGroupXML.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CGroupXML.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CGroupXML.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CGroupXML.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CGroupXML.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AssignmentHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AssignmentHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/BoundingBoxHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/BoundingBoxHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/AssignmentHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:79:28: required from here 79 | mpData->pTaskList->clear(); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/COPASIHandler.cpp:181:34: required from here 181 | mpData->pFunctionList->getIndex("Objective Function") != C_INVALID_INDEX) | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp: In member function ‘CXMLHandler* CXMLHandlerFactory::createHandler(const CXMLHandler::Type&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘AFTER’ not handled in switch [-Wswitch] 137 | switch (type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘BasePoint1’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘BasePoint2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Body’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘CurveSegment’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘DelayExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘End’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Expression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Footer’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Header’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘InitialExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘NoiseExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Position’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘PriorityExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Problem’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Start’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Text’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘TriggerExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Unit’ not handled in switch [-Wswitch] [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CExpat.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:55: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.cpp:63: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CallParameterHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CallParameterHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ChannelSpecHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ChannelSpecHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CharacterDataHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CharacterDataHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ChannelSpecHandler.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ColorDefinitionHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CommentHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ColorDefinitionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CommentHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ColorDefinitionHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CompartmentHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ConstantHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ConstantHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CubicBezierHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ConstantHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CubicBezierHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CurveHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CurveHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/DimensionsHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/DimensionsHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EllipseHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EllipseHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EventHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EventHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLEllipse.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EllipseHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/EventHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/FunctionHandler.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/FunctionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/FunctionHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/FunctionHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/FunctionHandler.cpp:96:42: required from here 96 | Index = mpData->pFunctionList->getIndex(Name); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GUIHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GUIHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GradientStopHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GradientStopHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GroupHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GroupHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GradientStopHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/GroupHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ImageHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ImageHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/InitialStateHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/InitialStateHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/KineticLawHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/KineticLawHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LayoutHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LayoutHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/KineticLawHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LayoutHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LineEndingHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LineEndingHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LineSegmentHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LineSegmentHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LineEndingHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LinearGradientHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LinearGradientHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfCurveSegmentsHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfCurveSegmentsHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/LinearGradientHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfLayoutsHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ListOfLayoutsHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MathMLHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MathMLHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MethodHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MethodHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MiriamAnnotationHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/MiriamAnnotationHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterGroupHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterGroupHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterGroupHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterSetHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterSetHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelParameterSetHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelValueHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelValueHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModifierHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModifierHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModelValueHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ModifierHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ObjectHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ObjectHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterDescriptionHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterDescriptionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterDescriptionHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterGroupHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterGroupHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterTextHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PlotItemHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ParameterTextHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PlotItemHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PlotSpecificationHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PlotSpecificationHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PointHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PointHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PolygonHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ProductHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PolygonHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ProductHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLPolygon.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/PolygonHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ProductHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RadialGradientHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RadialGradientHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RadialGradientHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RectangleHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RectangleHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReactionHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRectangle.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RectangleHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderCurveElementHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderCurveElementHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderCurveHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderCurveHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderCurve.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderCurveHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderInformationHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderTextHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderInformationHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderTextHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderInformationHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLText.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/RenderTextHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportDefinitionHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportDefinitionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportSectionHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportSectionHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportSectionHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportTargetHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SBMLMapHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/ReportTargetHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SBMLMapHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SBMLMapHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SBMLMapHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SliderHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SourceParameterHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SliderHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SourceParameterHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SliderHandler.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SourceParameterHandler.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StateTemplateHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StateTemplateHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StateTemplateVariableHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StateTemplateVariableHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StyleHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StyleHandler.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SubstrateHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SubstrateHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/StyleHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/SubstrateHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TableHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TaskHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TableHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TaskHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TaskHandler.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TableHandler.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TaskHandler.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TaskHandler.cpp:67:52: required from here 67 | mpData->pCurrentTask = CTaskFactory::create(Type, mpData->pTaskList); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TextGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TextGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UNKNOWNHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UNKNOWNHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TextGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/TextGlyphHandler.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UnitDefinitionHandler.cpp [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UnsupportedAnnotationHandler.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UnitDefinitionHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParserData.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UnsupportedAnnotationHandler.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/xml/parser/UnitDefinitionHandler.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:415:75: required from here 415 | CScanTask* pTask = dynamic_cast(&mpDataModel->getTaskList()->operator[]("Scan")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp: In member function ‘std::string CSEDMLExporter::createScanTask()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:455:8: warning: unused variable ‘result’ [-Wunused-variable] 455 | bool result = exportNthScanItem(pProblem, numItems - 1, task); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp: In member function ‘std::string CSEDMLExporter::createSteadyStateTask()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/CSEDMLExporter.cpp:643:23: warning: unused variable ‘tProblem’ [-Wunused-variable] 643 | CTrajectoryProblem* tProblem = static_cast(pTask->getProblem()); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:68: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:168:22: required from here 168 | if (pTaskList->getIndex("Time-Course") == C_INVALID_INDEX) | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp: In member function ‘void SEDMLImporter::importOutputs()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:478:18: warning: unused variable ‘logX’ [-Wunused-variable] 478 | bool logX = false; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:479:18: warning: unused variable ‘logY’ [-Wunused-variable] 479 | bool logY = false; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:512:18: warning: unused variable ‘logX’ [-Wunused-variable] 512 | bool logX = false; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:513:18: warning: unused variable ‘logY’ [-Wunused-variable] 513 | bool logY = false; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:437:46: warning: unused variable ‘copasiMap’ [-Wunused-variable] 437 | std::map< const CDataObject *, SBase * > & copasiMap = pModel->getObjectDataModel()->getCopasi2SBMLMap(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLImporter.cpp:439:29: warning: unused variable ‘pReports’ [-Wunused-variable] 439 | CReportDefinitionVector * pReports = mpDataModel->getReportDefinitionList(); | ^~~~~~~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp: In static member function ‘static const CDataObject* SEDMLUtils::resolveVariable(CModel*, const SedVariable*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp:337:25: warning: unused variable ‘pReaction’ [-Wunused-variable] 337 | const CReaction * pReaction = dynamic_cast< const CReaction * >(obj); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp: In static member function ‘static int SEDMLUtils::getAlphaFromRgba(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp:665:7: warning: unused variable ‘offset’ [-Wunused-variable] 665 | int offset = rgba[0] == '#' ? 1 : 0; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h: In constructor ‘VariableInfo::VariableInfo(const CDataObject*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:74:23: warning: ‘VariableInfo::mpObject’ will be initialized after [-Wreorder] 74 | const CDataObject * mpObject; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:72:8: warning: ‘bool VariableInfo::mIsValid’ [-Wreorder] 72 | bool mIsValid; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.cpp:808:1: warning: when initialized here [-Wreorder] 808 | VariableInfo::VariableInfo(const CDataObject * pObject) | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 36%] Built target libCOPASISE-core /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CMakeFiles/libCOPASISE-static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 36%] Linking CXX static library libCOPASISE.a cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/cmake -P CMakeFiles/libCOPASISE-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/cmake -E cmake_link_script CMakeFiles/libCOPASISE-static.dir/link.txt --verbose=1 /usr/bin/ar qc libCOPASISE.a "CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o" "CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o" "CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o" "CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o" "CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o" "CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o" "CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o" "CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o" "CMakeFiles/libCOPASISE-core.dir/function/FunctionDB.xml.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o" "CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o" "CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o" "CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o" "CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o" "CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o" "CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o" "CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o" "CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o" "CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o" "CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o" "CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o" "CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o" "CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o" "CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o" "CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o" "CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o" "CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o" "CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o" "CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/CGroupXML.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o" /usr/bin/ranlib libCOPASISE.a gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 36%] Built target libCOPASISE-static /usr/bin/gmake -f copasi/CMakeFiles/libCOPASIUI.dir/build.make copasi/CMakeFiles/libCOPASIUI.dir/depend /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 36%] Swig Python source cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/../swig/ -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/../../ -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -c++ -python -DLIBSBML_CPP_NAMESPACE_USE= -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSEDML_CPP_NAMESPACE_USE= -DLIBSEDML_CPP_NAMESPACE_BEGIN= -DLIBSEDML_CPP_NAMESPACE_END= -DLIBSEDML_CPP_NAMESPACE_QUALIFIER= -DLIBCOMBINE_CPP_NAMESPACE_USE= -DLIBCOMBINE_CPP_NAMESPACE_BEGIN= -DLIBCOMBINE_CPP_NAMESPACE_END= -DLIBCOMBINE_CPP_NAMESPACE_QUALIFIER= -features autodoc,1 -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/python.i [ 36%] Generating wizard/ui_wizard.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard/ui_wizard.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard/wizard.ui [ 36%] Generating MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQCreatorDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQCreatorDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQMiriamWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQMiriamWidget.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQModifiedDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQModifiedDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQRDFTreeView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQRDFTreeView.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQRDFTreeViewItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQRDFTreeViewItem.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeViewItem.h:0: Note: No relevant classes found. No output generated. [ 36%] Generating MIRIAMUI/moc_CQReferenceDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQReferenceDM.cpp_parameters [ 36%] Generating MIRIAMUI/ui_CQMiriamWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/ui_CQMiriamWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQMiriamWidget.ui [ 36%] Generating MIRIAMUI/ui_CQRDFTreeView.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/ui_CQRDFTreeView.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeView.ui [ 37%] Generating UI/moc_AboutDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_AboutDialog.cpp_parameters [ 37%] Generating UI/moc_CColorScale.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CColorScale.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CColorScale.h:0: Note: No relevant classes found. No output generated. [ 37%] Generating UI/moc_CCopasiPlot2YSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiPlot2YSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiPlotSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiSelectionWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiSelectionWidget.cpp_parameters [ 37%] Generating UI/moc_CLNAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CLNAResultSubwidget.cpp_parameters [ 37%] Generating UI/moc_CLNAResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CLNAResultWidget.cpp_parameters [ 37%] Generating UI/moc_CMCAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CMCAResultSubwidget.cpp_parameters [ 37%] Generating UI/moc_CMCAResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CMCAResultWidget.cpp_parameters [ 37%] Generating UI/moc_CProgressBar.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CProgressBar.cpp_parameters [ 37%] Generating UI/moc_CQAnalyticsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQAnalyticsWidget.cpp_parameters [ 37%] Generating UI/moc_CQArrayAnnotationsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQArrayAnnotationsWidget.cpp_parameters [ 38%] Generating UI/moc_CQArrayAnnotationsWidgetDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp_parameters [ 38%] Generating UI/moc_CQBaseDataModel.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBaseDataModel.cpp_parameters [ 38%] Generating UI/moc_CQBaseTreeDataModel.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBaseTreeDataModel.cpp_parameters [ 38%] Generating UI/moc_CQBrowserPane.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBrowserPane.cpp_parameters [ 38%] Generating UI/moc_CQBrowserPaneDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBrowserPaneDM.cpp_parameters [ 38%] Generating UI/moc_CQCheckModelWindow.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCheckModelWindow.cpp_parameters [ 38%] Generating UI/moc_CQComboDelegate.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQComboDelegate.cpp_parameters [ 38%] Generating UI/moc_CQCompartment.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartment.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentCopyOptions.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentCopyOptions.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentDM.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentsWidget.cpp_parameters [ 38%] Generating UI/moc_CQCopasiApplication.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCopasiApplication.cpp_parameters [ 38%] Generating UI/moc_CQCrossSectionTaskWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCrossSectionTaskWidget.cpp_parameters [ 39%] Generating UI/moc_CQDateTimeEditDelegate.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDateTimeEditDelegate.cpp_parameters [ 39%] Generating UI/moc_CQDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependenciesWidget.cpp_parameters [ 39%] Generating UI/moc_CQDependencyDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependencyDialog.cpp_parameters [ 39%] Generating UI/moc_CQDependencyWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependencyWidget.cpp_parameters [ 39%] Generating UI/moc_CQDifferentialEquations.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDifferentialEquations.cpp_parameters [ 39%] Generating UI/moc_CQEFMListWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMListWidget.cpp_parameters [ 39%] Generating UI/moc_CQEFMNetReactionDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMNetReactionDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMReactionDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMReactionDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMResultWidget.cpp_parameters [ 39%] Generating UI/moc_CQEFMSpeciesDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMSpeciesDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMWidget.cpp_parameters [ 39%] Generating UI/moc_CQEventDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventDM.cpp_parameters [ 39%] Generating UI/moc_CQEventWidget1.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventWidget1.cpp_parameters [ 39%] Generating UI/moc_CQEventsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventsWidget.cpp_parameters [ 40%] Generating UI/moc_CQExpandModelData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpandModelData.cpp_parameters [ 40%] Generating UI/moc_CQExperimentData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExperimentData.cpp_parameters [ 40%] Generating UI/moc_CQExperimentSelection.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExperimentSelection.cpp_parameters [ 40%] Generating UI/moc_CQExpressionMmlStackedWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp_parameters [ 40%] Generating UI/moc_CQExpressionWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionWidget.cpp_parameters [ 40%] Generating UI/moc_CQExternalToolDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExternalToolDialog.cpp_parameters [ 40%] Generating UI/moc_CQExternalTools.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExternalTools.cpp_parameters [ 40%] Generating UI/moc_CQFittingItemWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingItemWidget.cpp_parameters [ 40%] Generating UI/moc_CQFittingResult.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingResult.cpp_parameters [ 40%] Generating UI/moc_CQFittingResultTab1.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingResultTab1.cpp_parameters [ 40%] Generating UI/moc_CQFittingWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingWidget.cpp_parameters [ 40%] Generating UI/moc_CQFluxModeDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFluxModeDM.cpp_parameters [ 40%] Generating UI/moc_CQFunctionDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFunctionDM.cpp_parameters [ 41%] Generating UI/moc_CQFunctionsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFunctionsWidget.cpp_parameters [ 41%] Generating UI/moc_CQGlobalQuantitiesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp_parameters [ 41%] Generating UI/moc_CQGlobalQuantityDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQGlobalQuantityDM.cpp_parameters [ 41%] Generating UI/moc_CQLNAWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLNAWidget.cpp_parameters [ 41%] Generating UI/moc_CQLayoutsDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLayoutsDM.cpp_parameters [ 41%] Generating UI/moc_CQLayoutsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLayoutsWidget.cpp_parameters [ 41%] Generating UI/moc_CQLyapResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLyapResultWidget.cpp_parameters [ 41%] Generating UI/moc_CQLyapWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLyapWidget.cpp_parameters [ 41%] Generating UI/moc_CQMCAWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMCAWidget.cpp_parameters [ 41%] Generating UI/moc_CQMathMatrixWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMathMatrixWidget.cpp_parameters [ 41%] Generating UI/moc_CQMatrixDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMatrixDialog.cpp_parameters [ 41%] Generating UI/moc_CQMergingData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMergingData.cpp_parameters [ 41%] Generating UI/moc_CQMessageBox.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMessageBox.cpp_parameters [ 41%] Generating UI/moc_CQMmlScrollView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMmlScrollView.cpp_parameters [ 42%] Generating UI/moc_CQModelValue.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelValue.cpp_parameters [ 42%] Generating UI/moc_CQModelWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelWidget.cpp_parameters [ 42%] Generating UI/moc_CQMoietiesTaskResult.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMoietiesTaskResult.cpp_parameters [ 42%] Generating UI/moc_CQMoietiesTaskWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMoietiesTaskWidget.cpp_parameters [ 42%] Generating UI/moc_CQMultipleSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMultipleSelectionDialog.cpp_parameters [ 42%] Generating UI/moc_CQNameSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQNameSelectionDialog.cpp_parameters [ 42%] Generating UI/moc_CQNotes.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQNotes.cpp_parameters [ 42%] Generating UI/moc_CQOptPopulation.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptPopulation.cpp_parameters [ 42%] Generating UI/moc_CQOptimizationResult.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptimizationResult.cpp_parameters [ 42%] Generating UI/moc_CQOptimizationWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptimizationWidget.cpp_parameters [ 42%] Generating UI/moc_CQOscillationTaskWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOscillationTaskWidget.cpp_parameters ../swig/CDataVector.i:310: Warning 404: Duplicate template instantiation of 'vector< CRegisteredCommonName >' with name 'ReportItemVector' ignored, ../swig/CCommonName.i:46: Warning 404: previous instantiation of 'vector< CRegisteredCommonName >' with name 'ReportItemVector'. [ 42%] Generating UI/moc_CQParameterEstimationResult.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterEstimationResult.cpp_parameters [ 42%] Generating UI/moc_CQParameterGroupDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterGroupDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterGroupView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterGroupView.cpp_parameters [ 43%] Generating UI/moc_CQParameterOverviewDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterOverviewDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterOverviewWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterOverviewWidget.cpp_parameters [ 43%] Generating UI/moc_CQParameterResultItemModel.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterResultItemModel.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.h:0: Note: No relevant classes found. No output generated. [ 43%] Generating UI/moc_CQParameterSetsDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterSetsDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterSetsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterSetsWidget.cpp_parameters [ 43%] Generating UI/moc_CQPlotDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPlotDM.cpp_parameters [ 43%] Generating UI/moc_CQPlotsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPlotsWidget.cpp_parameters [ 43%] Generating UI/moc_CQPreferenceDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPreferenceDialog.cpp_parameters [ 43%] Generating UI/moc_CQProgressDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressDialog.cpp_parameters [ 43%] Generating UI/moc_CQProgressItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItem.cpp_parameters [ 43%] Generating UI/moc_CQProgressItemBar.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItemBar.cpp_parameters [ 43%] Generating UI/moc_CQProgressItemText.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItemText.cpp_parameters [ 43%] Generating UI/moc_CQPushButtonDelegate.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPushButtonDelegate.cpp_parameters [ 44%] Generating UI/moc_CQReactionDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReactionDM.cpp_parameters [ 44%] Generating UI/moc_CQReactionsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReactionsWidget.cpp_parameters [ 44%] Generating UI/moc_CQReportDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDM.cpp_parameters [ 44%] Generating UI/moc_CQReportDefinition.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDefinition.cpp_parameters [ 44%] Generating UI/moc_CQReportDefinitionSelect.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDefinitionSelect.cpp_parameters [ 44%] Generating UI/moc_CQReportListItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportListItem.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportListItem.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQReportsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportsWidget.cpp_parameters [ 44%] Generating UI/moc_CQSBMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSBMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSBMLFileDialog.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQSEDMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSEDMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLFileDialog.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQSEDMLImportDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSEDMLImportDialog.cpp_parameters [ 44%] Generating UI/moc_CQScanWidgetParameterSet.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQScanWidgetParameterSet.cpp_parameters [ 44%] Generating UI/moc_CQScrolledDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQScrolledDependenciesWidget.cpp_parameters [ 44%] Generating UI/moc_CQSensResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSensResultWidget.cpp_parameters [ 45%] Generating UI/moc_CQSimpleSelectionTree.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSimpleSelectionTree.cpp_parameters [ 45%] Generating UI/moc_CQSortFilterProxyModel.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSortFilterProxyModel.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSortFilterProxyModel.h:0: Note: No relevant classes found. No output generated. [ 45%] Generating UI/moc_CQSpecieDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpecieDM.cpp_parameters [ 45%] Generating UI/moc_CQSpeciesDetail.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpeciesDetail.cpp_parameters [ 45%] Generating UI/moc_CQSpeciesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpeciesWidget.cpp_parameters [ 45%] Generating UI/moc_CQSpinBoxDelegate.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpinBoxDelegate.cpp_parameters [ 45%] Generating UI/moc_CQSplashWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSplashWidget.cpp_parameters [ 45%] Generating UI/moc_CQStartValueReset.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQStartValueReset.cpp_parameters [ 45%] Generating UI/moc_CQSteadyStateResult.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSteadyStateResult.cpp_parameters ../swig/COptProblem.i:39: Warning 404: Duplicate template instantiation of 'CVector< double >' with name 'FloatCVector' ignored, ../swig/CVector.i:122: Warning 404: previous instantiation of 'CVector< double >' with name 'FloatVector'. [ 45%] Generating UI/moc_CQTSSAResultSubWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAResultSubWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSAResultWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAResultWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSATimeScaleWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSATimeScaleWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSAWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAWidget.cpp_parameters [ 45%] Generating UI/moc_CQTabWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTabWidget.cpp_parameters [ 46%] Generating UI/moc_CQTableView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTableView.cpp_parameters [ 46%] Generating UI/moc_CQTableWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTableWidget.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTableWidget.h:0: Note: No relevant classes found. No output generated. [ 46%] Generating UI/moc_CQTaskBtnWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskBtnWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskHeaderWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskHeaderWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskMethodWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskMethodWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskThread.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskThread.cpp_parameters [ 46%] Generating UI/moc_CQTextDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTextDialog.cpp_parameters [ 46%] Generating UI/moc_CQThread.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQThread.cpp_parameters [ 46%] Generating UI/moc_CQTimeSensWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSensWidget.cpp_parameters [ 46%] Generating UI/moc_CQTimeSeriesDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSeriesDM.cpp_parameters [ 46%] Generating UI/moc_CQTimeSeriesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSeriesWidget.cpp_parameters [ 46%] Generating UI/moc_CQTrajectoryWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTrajectoryWidget.cpp_parameters [ 46%] Generating UI/moc_CQUndoTester.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUndoTester.cpp_parameters [ 47%] Generating UI/moc_CQUnitDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitDM.cpp_parameters [ 47%] Generating UI/moc_CQUnitDetail.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitDetail.cpp_parameters [ 47%] Generating UI/moc_CQUnitsWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitsWidget.cpp_parameters [ 47%] Generating UI/moc_CQUpdateAvogadro.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUpdateAvogadro.cpp_parameters [ 47%] Generating UI/moc_CQUpdatesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUpdatesWidget.cpp_parameters [ 47%] Generating UI/moc_CQValidator.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQValidator.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:0: Note: No relevant classes found. No output generated. [ 47%] Generating UI/moc_CQValidatorUnit.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQValidatorUnit.cpp_parameters [ 47%] Generating UI/moc_CScanContainerWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanContainerWidget.cpp_parameters [ 47%] Generating UI/moc_CScanItemData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanItemData.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:0: Note: No relevant classes found. No output generated. [ 47%] Generating UI/moc_CScanWidgetRandom.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRandom.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetRepeat.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRepeat.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetScan.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetScan.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetTask.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetTask.cpp_parameters [ 47%] Generating UI/moc_CUpDownSubwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CUpDownSubwidget.cpp_parameters [ 48%] Generating UI/moc_CWindowInterface.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CWindowInterface.cpp_parameters [ 48%] Generating UI/moc_ChemEqValidator.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ChemEqValidator.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ChemEqValidator.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiFileDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiFileDialog.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiGuiTypes.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiGuiTypes.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiGuiTypes.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiSlider.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiSlider.cpp_parameters [ 48%] Generating UI/moc_DataModelGUI.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_DataModelGUI.cpp_parameters [ 48%] Generating UI/moc_DefaultplotDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_DefaultplotDialog.cpp_parameters [ 48%] Generating UI/moc_FunctionWidget1.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_FunctionWidget1.cpp_parameters [ 48%] Generating UI/moc_MyLineEdit.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_MyLineEdit.cpp_parameters [ 48%] Generating UI/moc_ObjectBrowserDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserDialog.cpp_parameters [ 48%] Generating UI/moc_ObjectBrowserItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserItem.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserItem.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_ObjectBrowserWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserWidget.cpp_parameters [ 48%] Generating UI/moc_ReactionsWidget1.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ReactionsWidget1.cpp_parameters [ 49%] Generating UI/moc_ScanWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ScanWidget.cpp_parameters [ 49%] Generating UI/moc_SensWidgetComboBox.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SensWidgetComboBox.cpp_parameters [ 49%] Generating UI/moc_SensitivitiesWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SensitivitiesWidget.cpp_parameters ../swig/copasi.i:422: Warning 404: Duplicate template instantiation of 'vector< CUnit >' with name 'CUnitStdVector' ignored, ../swig/CModel.i:150: Warning 404: previous instantiation of 'vector< CUnit >' with name 'CUnitStdVector'. [ 49%] Generating UI/moc_SliderDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SliderDialog.cpp_parameters [ 49%] Generating UI/moc_SliderSettingsDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SliderSettingsDialog.cpp_parameters [ 49%] Generating UI/moc_StateSubwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_StateSubwidget.cpp_parameters [ 49%] Generating UI/moc_SteadyStateWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SteadyStateWidget.cpp_parameters [ 49%] Generating UI/moc_TaskWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_TaskWidget.cpp_parameters [ 49%] Generating UI/moc_copasiWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_copasiWidget.cpp_parameters [ 49%] Generating UI/moc_copasiui3window.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_copasiui3window.cpp_parameters [ 49%] Generating UI/moc_listviews.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_listviews.cpp_parameters [ 49%] Generating UI/moc_objectdebug.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_objectdebug.cpp_parameters [ 49%] Generating UI/moc_parametertable.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_parametertable.cpp_parameters [ 49%] Generating UI/moc_qtUtilities.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_qtUtilities.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:0: Note: No relevant classes found. No output generated. [ 49%] Generating UI/ui_CEntityProvenanceDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CEntityProvenanceDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CEntityProvenanceDialog.ui [ 49%] Generating UI/ui_CLNAResultSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CLNAResultSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.ui [ 49%] Generating UI/ui_CMCAResultSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CMCAResultSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.ui [ 49%] Generating UI/ui_CProvenanceDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CProvenanceDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProvenanceDialog.ui [ 49%] Generating UI/ui_CQAnalyticsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQAnalyticsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQAnalyticsWidget.ui [ 49%] Generating UI/ui_CQArrayAnnotationsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQArrayAnnotationsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.ui [ 49%] Generating UI/ui_CQBrowserPane.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQBrowserPane.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPane.ui [ 49%] Generating UI/ui_CQCheckModelWindow.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCheckModelWindow.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCheckModelWindow.ui [ 49%] Generating UI/ui_CQCompartment.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartment.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.ui [ 49%] Generating UI/ui_CQCompartmentCopyOptions.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartmentCopyOptions.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentCopyOptions.ui [ 49%] Generating UI/ui_CQCompartmentsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartmentsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.ui [ 49%] Generating UI/ui_CQCrossSectionTaskWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCrossSectionTaskWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCrossSectionTaskWidget.ui [ 50%] Generating UI/ui_CQDependenciesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQDependenciesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependenciesWidget.ui [ 50%] Generating UI/ui_CQDependencyDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQDependencyDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyDialog.ui [ 50%] Generating UI/ui_CQDependencyWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQDependencyWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyWidget.ui [ 50%] Generating UI/ui_CQDifferentialEquations.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQDifferentialEquations.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDifferentialEquations.ui [ 50%] Generating UI/ui_CQEFMListWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEFMListWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMListWidget.ui [ 50%] Generating UI/ui_CQEFMResultWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEFMResultWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMResultWidget.ui [ 50%] Generating UI/ui_CQEFMWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEFMWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMWidget.ui [ 50%] Generating UI/ui_CQEventWidget1.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEventWidget1.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.ui [ 50%] Generating UI/ui_CQEventsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEventsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.ui [ 50%] Generating UI/ui_CQExpandModelData.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpandModelData.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpandModelData.ui [ 50%] Generating UI/ui_CQExperimentData.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExperimentData.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.ui [ 50%] Generating UI/ui_CQExperimentSelection.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExperimentSelection.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentSelection.ui [ 50%] Generating UI/ui_CQExpressionMmlStackedWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.ui [ 50%] Generating UI/ui_CQExternalToolDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExternalToolDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.ui [ 51%] Generating UI/ui_CQFittingItemWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingItemWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.ui [ 51%] Generating UI/ui_CQFittingResult.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingResult.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.ui [ 51%] Generating UI/ui_CQFittingResultTab1.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingResultTab1.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResultTab1.ui [ 51%] Generating UI/ui_CQFittingWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.ui [ 51%] Generating UI/ui_CQFunctionsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFunctionsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.ui [ 51%] Generating UI/ui_CQGlobalQuantitiesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQGlobalQuantitiesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.ui [ 51%] Generating UI/ui_CQLNAWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQLNAWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.ui [ 51%] Generating UI/ui_CQLayoutsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQLayoutsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.ui [ 51%] Generating UI/ui_CQLyapResultWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQLyapResultWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.ui [ 51%] Generating UI/ui_CQLyapWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQLyapWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapWidget.ui [ 51%] Generating UI/ui_CQMCAWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMCAWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.ui [ 51%] Generating UI/ui_CQMathMatrixWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMathMatrixWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.ui [ 51%] Generating UI/ui_CQMatrixDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMatrixDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMatrixDialog.ui [ 52%] Generating UI/ui_CQMergingData.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMergingData.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMergingData.ui [ 52%] Generating UI/ui_CQMessageBox.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMessageBox.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.ui [ 52%] Generating UI/ui_CQModelValue.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelValue.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.ui [ 52%] Generating UI/ui_CQModelWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.ui [ 52%] Generating UI/ui_CQMoietiesTaskResult.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMoietiesTaskResult.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.ui [ 52%] Generating UI/ui_CQMoietiesTaskWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMoietiesTaskWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskWidget.ui [ 52%] Generating UI/ui_CQMultipleSelectionDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMultipleSelectionDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMultipleSelectionDialog.ui [ 52%] Generating UI/ui_CQNameSelectionDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQNameSelectionDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNameSelectionDialog.ui [ 52%] Generating UI/ui_CQNotes.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQNotes.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.ui [ 52%] Generating UI/ui_CQOptimizationResult.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOptimizationResult.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.ui [ 52%] Generating UI/ui_CQOptimizationWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOptimizationWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.ui [ 52%] Generating UI/ui_CQOscillationTaskWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOscillationTaskWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOscillationTaskWidget.ui [ 52%] Generating UI/ui_CQParameterEstimationResult.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQParameterEstimationResult.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.ui [ 52%] Generating UI/ui_CQParameterOverviewWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQParameterOverviewWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.ui [ 53%] Generating UI/ui_CQParameterSetWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQParameterSetWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetWidget.ui [ 53%] Generating UI/ui_CQParameterSetsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQParameterSetsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.ui [ 53%] Generating UI/ui_CQParametersWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQParametersWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParametersWidget.ui [ 53%] Generating UI/ui_CQPlotsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQPlotsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.ui [ 53%] Generating UI/ui_CQPreferenceDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQPreferenceDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPreferenceDialog.ui [ 53%] Generating UI/ui_CQProgressDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQProgressDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressDialog.ui [ 53%] Generating UI/ui_CQProgressItem.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQProgressItem.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItem.ui [ 53%] Generating UI/ui_CQProgressItemBar.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQProgressItemBar.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemBar.ui [ 53%] Generating UI/ui_CQProgressItemText.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQProgressItemText.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemText.ui [ 53%] Generating UI/ui_CQReactionsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReactionsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.ui [ 53%] Generating UI/ui_CQReportDefinition.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReportDefinition.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.ui [ 53%] Generating UI/ui_CQReportDefinitionSelect.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReportDefinitionSelect.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinitionSelect.ui [ 53%] Generating UI/ui_CQReportsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReportsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.ui [ 54%] Generating UI/ui_CQSEDMLImportDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.ui [ 54%] Generating UI/ui_CQScanWidgetParameterSet.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQScanWidgetParameterSet.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.ui [ 54%] Generating UI/ui_CQScrolledDependenciesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQScrolledDependenciesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScrolledDependenciesWidget.ui [ 54%] Generating UI/ui_CQSensResultWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSensResultWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.ui [ 54%] Generating UI/ui_CQSpeciesDetail.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSpeciesDetail.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.ui [ 54%] Generating UI/ui_CQSpeciesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSpeciesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.ui [ 54%] Generating UI/ui_CQSplashWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSplashWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSplashWidget.ui [ 54%] Generating UI/ui_CQStartValueReset.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQStartValueReset.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQStartValueReset.ui [ 54%] Generating UI/ui_CQSteadyStateResult.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSteadyStateResult.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.ui [ 54%] Generating UI/ui_CQTSSAResultSubWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAResultSubWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.ui [ 54%] Generating UI/ui_CQTSSAWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.ui [ 54%] Generating UI/ui_CQTabWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTabWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.ui [ 54%] Generating UI/ui_CQTaskBtnWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTaskBtnWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskBtnWidget.ui [ 54%] Generating UI/ui_CQTaskHeaderWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTaskHeaderWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskHeaderWidget.ui [ 55%] Generating UI/ui_CQTaskMethodWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTaskMethodWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskMethodWidget.ui [ 55%] Generating UI/ui_CQTextDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTextDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTextDialog.ui [ 55%] Generating UI/ui_CQTimeSensWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTimeSensWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.ui [ 55%] Generating UI/ui_CQTimeSeriesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTimeSeriesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesWidget.ui [ 55%] Generating UI/ui_CQTrajectoryWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTrajectoryWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTrajectoryWidget.ui [ 55%] Generating UI/ui_CQUndoHistoryDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQUndoHistoryDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoHistoryDialog.ui [ 55%] Generating UI/ui_CQUnitDetail.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQUnitDetail.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.ui [ 55%] Generating UI/ui_CQUnitsWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQUnitsWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.ui [ 55%] Generating UI/ui_CQUpdateAvogadro.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQUpdateAvogadro.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdateAvogadro.ui [ 55%] Generating UI/ui_CScanWidgetRandom.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CScanWidgetRandom.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRandom.ui [ 55%] Generating UI/ui_CScanWidgetRepeat.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CScanWidgetRepeat.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRepeat.ui [ 55%] Generating UI/ui_CScanWidgetScan.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CScanWidgetScan.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.ui [ 55%] Generating UI/ui_CScanWidgetTask.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CScanWidgetTask.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetTask.ui [ 56%] Generating UI/ui_CUpDownSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CUpDownSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CUpDownSubwidget.ui [ 56%] Generating UI/ui_DefaultplotDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_DefaultplotDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DefaultplotDialog.ui [ 56%] Generating UI/ui_FunctionWidget1.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_FunctionWidget1.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.ui [ 56%] Generating UI/ui_ReactionsWidget1.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.ui [ 56%] Generating UI/ui_SensitivitiesWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_SensitivitiesWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.ui [ 56%] Generating UI/ui_SliderDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_SliderDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.ui [ 56%] Generating UI/ui_SliderSettingsDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_SliderSettingsDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderSettingsDialog.ui [ 56%] Generating UI/ui_StateSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.ui [ 56%] Generating UI/ui_SteadyStateWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_SteadyStateWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SteadyStateWidget.ui [ 56%] Generating UI/ui_objectdebug.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_objectdebug.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/objectdebug.ui [ 56%] Generating barChart/moc_CQ3DBarsModifier.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart/moc_CQ3DBarsModifier.cpp_parameters [ 56%] Generating layoutUI/moc_BezierCurve.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_BezierCurve.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/BezierCurve.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CArrow.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CArrow.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CArrow.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CCompartmentGraphNode.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CCompartmentGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CCompartmentGraphNode.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CDataEntity.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CDataEntity.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CDataEntity.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CGraphCurve.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CGraphCurve.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphCurve.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CGraphNode.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphNode.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CLabel.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CLabel.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CLabel.h:0: Note: No relevant classes found. No output generated. [ 56%] Generating layoutUI/moc_CQAutolayoutWizard.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQAutolayoutWizard.cpp_parameters [ 57%] Generating layoutUI/moc_CQCurrentValueTable.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQCurrentValueTable.cpp_parameters [ 57%] Generating layoutUI/moc_CQLayoutThread.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQLayoutThread.cpp_parameters [ 57%] Generating layoutUI/moc_CQPlayerControlWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQPlayerControlWidget.cpp_parameters [ 57%] Generating layoutUI/moc_CQSpringLayoutParameterWindow.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQSpringLayoutParameterWindow.cpp_parameters [ 57%] Generating layoutUI/moc_CSimSummaryInfo.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CSimSummaryInfo.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CSimSummaryInfo.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CVisParameters.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CVisParameters.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CVisParameters.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating plotUI/moc_BandedGraphWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_BandedGraphWidget.cpp_parameters [ 58%] Generating plotUI/moc_C2DCurveData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_C2DCurveData.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DCurveData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_C2DPlotCurve.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_C2DPlotCurve.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DPlotCurve.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CBandedGraphData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CBandedGraphData.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CBandedGraphData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CHistoCurveData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CHistoCurveData.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CDataObject * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CDataObject * >::operator ()(size_t const &). /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CHistoCurveData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CLinearColorMap.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CLinearColorMap.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CLinearColorMap.h:0: Note: No relevant classes found. No output generated. /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CDataObject const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CDataObject const * >::operator ()(size_t const &). [ 58%] Generating plotUI/moc_COutputHandlerPlot.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_COutputHandlerPlot.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/COutputHandlerPlot.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CPlotInterface.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CPlotInterface.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CFunction const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CFunction const * >::operator ()(size_t const &). /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CPlotSpectogram.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CPlotSpectogram.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CObjectInterface const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CObjectInterface const * >::operator ()(size_t const &). /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotSpectogram.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CQAdvancedPlotSettings.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQAdvancedPlotSettings.cpp_parameters [ 58%] Generating plotUI/moc_CQCustomPlot.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQCustomPlot.cpp_parameters [ 58%] Generating plotUI/moc_CQDataVizPlot.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQDataVizPlot.cpp_parameters [ 58%] Generating plotUI/moc_CQExtender.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQExtender.cpp_parameters [ 58%] Generating plotUI/moc_CQMarchingSquares.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQMarchingSquares.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotColors.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotColors.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotColors.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotEditWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotEditWidget.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotEditWidget.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotSubwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotSubwidget.cpp_parameters [ 59%] Generating plotUI/moc_CQSpectogramWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQSpectogramWidget.cpp_parameters [ 59%] Generating plotUI/moc_CQtChartsPlot.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQtChartsPlot.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQtChartsPlot.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQwtPlot.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQwtPlot.cpp_parameters [ 59%] Generating plotUI/moc_CSpectorgramData.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CSpectorgramData.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_HistoWidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_HistoWidget.cpp_parameters [ 59%] Generating plotUI/moc_curve2dwidget.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_curve2dwidget.cpp_parameters [ 59%] Generating plotUI/moc_plotwindow.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_plotwindow.cpp_parameters [ 59%] Generating plotUI/moc_scrollbar.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_scrollbar.cpp_parameters [ 59%] Generating plotUI/moc_scrollzoomer.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_scrollzoomer.cpp_parameters [ 59%] Generating plotUI/ui_BandedGraphWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_BandedGraphWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/BandedGraphWidget.ui [ 59%] Generating plotUI/ui_CQAdvancedPlotSettings.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_CQAdvancedPlotSettings.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQAdvancedPlotSettings.ui [ 59%] Generating plotUI/ui_CQPlotSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_CQPlotSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.ui [ 59%] Generating plotUI/ui_CQSpectogramWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_CQSpectogramWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQSpectogramWidget.ui [ 59%] Generating plotUI/ui_HistoWidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_HistoWidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.ui [ 59%] Generating plotUI/ui_PlotSubwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_PlotSubwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/PlotSubwidget.ui [ 60%] Generating plotUI/ui_curve2dwidget.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/ui_curve2dwidget.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/curve2dwidget.ui [ 60%] Generating qlayout/moc_CQAnimationControls.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationControls.cpp_parameters [ 60%] Generating qlayout/moc_CQAnimationSettingsEditor.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationSettingsEditor.cpp_parameters [ 60%] Generating qlayout/moc_CQAnimationWindow.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationWindow.cpp_parameters [ 60%] Generating qlayout/moc_CQConnectionGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp_parameters [ 60%] Generating qlayout/moc_CQCopasiAnimation.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiAnimation.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQCopasiEffect.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiEffect.cpp_parameters [ 60%] Generating qlayout/moc_CQCopasiGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiGraphicsItem.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiGraphicsItem.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQEffectDescription.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQEffectDescription.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescription.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQEffectDescriptionEdit.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQEffectDescriptionEdit.cpp_parameters [ 60%] Generating qlayout/moc_CQElementProperties.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQElementProperties.cpp_parameters [ 60%] Generating qlayout/moc_CQLabelGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLabelGraphicsItem.cpp_parameters [ 61%] Generating qlayout/moc_CQLayoutScene.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLayoutScene.cpp_parameters [ 61%] Generating qlayout/moc_CQLayoutView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLayoutView.cpp_parameters [ 61%] Generating qlayout/moc_CQRenderConverter.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQRenderConverter.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQRenderConverter.h:0: Note: No relevant classes found. No output generated. [ 61%] Generating qlayout/moc_CQRoundedRect.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQRoundedRect.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQRoundedRect.h:0: Note: No relevant classes found. No output generated. [ 61%] Generating qlayout/moc_CQStyledGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQStyledGraphicsItem.cpp_parameters [ 61%] Generating qlayout/moc_CQZoomableView.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQZoomableView.cpp_parameters [ 61%] Generating qlayout/ui_CQAnimationControls.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/ui_CQAnimationControls.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationControls.ui [ 61%] Generating qlayout/ui_CQAnimationSettingsEditor.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/ui_CQAnimationSettingsEditor.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationSettingsEditor.ui [ 61%] Generating qlayout/ui_CQAnimationWindow.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/ui_CQAnimationWindow.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.ui [ 62%] Generating qlayout/ui_CQEffectDescriptionEdit.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/ui_CQEffectDescriptionEdit.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescriptionEdit.ui [ 62%] Generating qlayout/ui_CQElementProperties.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/ui_CQElementProperties.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQElementProperties.ui [ 62%] Generating qrc_copasi.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/rcc --name copasi --output /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qrc_copasi.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI/copasi.qrc [ 63%] Generating resourcesUI/moc_CQIconResource.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI/moc_CQIconResource.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI/CQIconResource.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating tex/moc_CMathMLToTeX.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/moc_CMathMLToTeX.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating tex/moc_CStructureParser.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/moc_CStructureParser.cpp_parameters /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating undoUI/moc_CQUndoDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/moc_CQUndoDM.cpp_parameters [ 63%] Generating undoUI/moc_CQUndoDialog.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/moc_CQUndoDialog.cpp_parameters [ 63%] Generating undoUI/ui_CQUndoDialog.h cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/ui_CQUndoDialog.h /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDialog.ui [ 63%] Generating wizard/moc_wizard.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard/moc_wizard.cpp_parameters cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CMakeFiles/libCOPASIUI.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASIUI.dir/build.make copasi/CMakeFiles/libCOPASIUI.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQCreatorDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQCreatorDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQMiriamWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQMiriamWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.h:49: Warning 462: Unable to set dimensionless array variable /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSlider.h:54: Warning 462: Unable to set dimensionless array variable In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAM/CModelMIRIAMInfo.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQMiriamWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQMiriamWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python" -P /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/../common/patch-wrapper.cmake -- Patching C++ wrapper [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQModifiedDM.cpp cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python" -DVERSION=4.45.298 -P /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/patch-python.cmake -- Patching Python wrapper cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 63%] Building CXX object copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -Dbinding_python_lib_EXPORTS -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python -I/usr/include/python3.13 -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -MF CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o.d -o CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/local.cpp:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:4688: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:58: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQModifiedDM.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:55: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/local_common.cpp:70: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/downcast_common.cpp:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/local.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/downcast_common.cpp:246:54: required from here 246 | else if (dynamic_cast(container)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CDataModel]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CDataModel; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CDataModel; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CDataModel; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CDataModel; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CDataModel; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/downcast_common.cpp:250:48: required from here 250 | else if (dynamic_cast(container)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/downcast_common.cpp:270:59: required from here 270 | else if (dynamic_cast(container)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvaluationTree; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvaluationTree; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvaluationTree]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvaluationTree; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvaluationTree; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvaluationTree; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/common/downcast_common.cpp:363:59: required from here 363 | else if (dynamic_cast(container)) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:53, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTypes.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:4691: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘CDataObject* CVector_Sl_CDataObject_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:7028:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7028 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CDataObject* CVector_Sl_CDataObject_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:7042:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7042 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CFunction* CVector_Sl_CFunction_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:7056:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7056 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CObjectInterface* CVector_Sl_CObjectInterface_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:7070:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7070 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:10891:42: required from here 10891 | return (CDataObject*)&((*self)[name]); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotItem; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotItem; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotItem]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotItem; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotItem; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotItem; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘std::vector CDataHandler_getNthRow(CDataHandler*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:14365:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14365 | if (index >= data.size()) | ~~~~~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15166: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15171: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15181: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15567: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeView.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15620:42: required from here 15620 | return (CDataObject*)&((*self)[name]); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:15670: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeView.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeView.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeView.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeViewItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQRDFTreeViewItem.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQReferenceDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/CQReferenceDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o -MF CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart/CQ3DBarsModifier.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart/CQ3DBarsModifier.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/BezierCurve.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CArrow.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp: In member function ‘void CQSelectionWizardPage::fillTree(const CModel&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:417:46: warning: enum constant in boolean context [-Wint-in-bool-context] 417 | pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:417:66: warning: suggest parentheses around operand of ‘!’ or change ‘|’ to ‘||’ or ‘!’ to ‘~’ [-Wparentheses] 417 | pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:434:54: warning: enum constant in boolean context [-Wint-in-bool-context] 434 | pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.cpp:434:74: warning: suggest parentheses around operand of ‘!’ or change ‘|’ to ‘||’ or ‘!’ to ‘~’ [-Wparentheses] 434 | pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CCompartmentGraphNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CCompartmentGraphNode.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CCompartmentGraphNode.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CDataEntity.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphCurve.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphCurve.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphCurve.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphCurve.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphNode.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphNode.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CGraphNode.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CLabel.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CLabel.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CLabel.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CLabel.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQLayoutThread.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQLayoutThread.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQPlayerControlWidget.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQSpringLayoutParameterWindow.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CSimSummaryInfo.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CVisParameters.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationControls.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationSettingsEditor.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationSettingsEditor.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:128:88: required from here 128 | const CEFMTask *task = dynamic_cast< const CEFMTask * >(&mpDataModel->getTaskList()->operator[]("Elementary Flux Modes")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp: In member function ‘virtual void QCustomTimeCourseAnimation::getScales(std::vector&, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQAnimationWindow.cpp:348:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 348 | if (index == C_INVALID_INDEX) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQConnectionGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQConnectionGraphicsItem.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQConnectionGraphicsItem.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQConnectionGraphicsItem.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiAnimation.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiEffect.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQCopasiGraphicsItem.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescription.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescription.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescriptionEdit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQEffectDescriptionEdit.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQElementProperties.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQElementProperties.cpp:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQElementProperties.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLabelGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLabelGraphicsItem.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLabelGraphicsItem.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutScene.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutScene.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLCurve.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQConnectionGraphicsItem.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutScene.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutScene.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutScene.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutView.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutView.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_initializeRawWithOutputHandler’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:191331:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:5142:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 5142 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_initializeRawWithOutputHandler’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:14083:14: note: ‘success’ was declared here 14083 | bool success; | ^~~~~~~ In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_initializeRaw’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:191284:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:5142:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 5142 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_initializeRaw’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:14063:14: note: ‘success’ was declared here 14063 | bool success; | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQLayoutView.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQRenderConverter.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQRenderConverter.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGroup.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQRoundedRect.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQStyledGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGradientBase.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQStyledGraphicsItem.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQStyledGraphicsItem.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/CQZoomableView.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/BandedGraphWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/BandedGraphWidget.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/BandedGraphWidget.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DCurveData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DCurveData.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DCurveData.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DPlotCurve.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DCurveData.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/C2DPlotCurve.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CBandedGraphData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CBandedGraphData.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CBandedGraphData.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CHistoCurveData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CHistoCurveData.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CHistoCurveData.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CLinearColorMap.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/COutputHandlerPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/COutputHandlerPlot.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotSpectogram.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotSpectogram.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotSpectogram.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQAdvancedPlotSettings.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQAdvancedPlotSettings.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_processRaw’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:191401:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:5142:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 5142 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_processRaw’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python/copasi_wrapper.cpp:14127:14: note: ‘success’ was declared here 14127 | bool success; | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘virtual bool CQCustomPlot::initFromSpec(const CPlotSpecification*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:559:8: warning: variable ‘needLeft’ set but not used [-Wunused-but-set-variable] 559 | bool needLeft = false; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘virtual void CQCustomPlot::wheelEvent(QWheelEvent*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1585:50: warning: ‘QPoint QWheelEvent::pos() const’ is deprecated: Use position() [-Wdeprecated-declarations] 1585 | QCPLayerable * element = layerableAt(event->pos(), true); | ~~~~~~~~~~^~ In file included from /usr/include/qt5/QtGui/QPaintEvent:1, from /usr/include/qcustomplot.h:56, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.h:24: /usr/include/qt5/QtGui/qevent.h:225:19: note: declared here 225 | inline QPoint pos() const { return p.toPoint(); } | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::updateCurves(const size_t&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1682:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 1682 | if (curve_activity != activity) | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1805:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1805 | if (current_count != data_size && pY2) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1809:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1809 | for (int i = current_count; i < data_size; ++i) | ~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1834:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1834 | if (current_count != data_size && helper) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1852:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1852 | if (data_size != current_count) | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1865:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1865 | for (int count = 0; count < data_size; ++count) | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1903:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1903 | for (int count = 0; count < data_size; ++count) | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1944:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1944 | for (int l = 0; l < contours.size(); l++) | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:1947:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1947 | for (int j = 0; j < contours[l].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::resizeCurveData(const size_t&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:2028:48: warning: unused variable ‘data’ [-Wunused-variable] 2028 | std::vector< CVector< double > * > & data = mData[activity]; | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::initializeIndependentData(const CDataModel&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:2229:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2229 | for (int c = 0; c < numCols; ++c) | ~~^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:2220:14: warning: unused variable ‘independentObjects’ [-Wunused-variable] 2220 | auto & independentObjects = pExperiment->getIndependentObjects(); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::updateSteadyStateInfo(int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.cpp:2253:9: warning: unused variable ‘model’ [-Wunused-variable] 2253 | auto& model = *CRootContainer::getDatamodelList()->begin(); | ^~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h: In constructor ‘CQDataVizPlot::CQDataVizPlot(QWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:370:8: warning: ‘CQDataVizPlot::mReplotFinished’ will be initialized after [-Wreorder] 370 | bool mReplotFinished; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:167:8: warning: ‘bool CQDataVizPlot::m_isTouching’ [-Wreorder] 167 | bool m_isTouching; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:43:1: warning: when initialized here [-Wreorder] 43 | CQDataVizPlot::CQDataVizPlot(QWidget * parent) | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h: In constructor ‘CQDataVizPlot::CQDataVizPlot(const CPlotSpecification*, QWidget*, PlotMode)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:370:8: warning: ‘CQDataVizPlot::mReplotFinished’ will be initialized after [-Wreorder] 370 | bool mReplotFinished; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:167:8: warning: ‘bool CQDataVizPlot::m_isTouching’ [-Wreorder] 167 | bool m_isTouching; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:68:1: warning: when initialized here [-Wreorder] 68 | CQDataVizPlot::CQDataVizPlot(const CPlotSpecification * plotspec, QWidget * parent, PlotMode mode) | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::initFromSpec(const CPlotSpecification*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:277:8: warning: unused variable ‘needLeft’ [-Wunused-variable] 277 | bool needLeft = false; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:278:8: warning: unused variable ‘needRight’ [-Wunused-variable] 278 | bool needRight = false; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::compile(CObjectInterface::ContainerList)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:382:12: warning: unused variable ‘isSpectogram’ [-Wunused-variable] 382 | bool isSpectogram = pItem->getType() == CPlotItem::spectogram; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp: In function ‘std::set resizeRange(std::set&, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:591:20: warning: comparison of integer expressions of different signedness: ‘std::set::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 591 | if (range.size() < maxRange) | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘void CQDataVizPlot::updateCurves(const size_t&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:643:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 643 | if (curve_activity != activity) | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:665:25: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 665 | if (data_size != data_count) | ~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:712:25: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 712 | if (data_size != data_count) | ~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:718:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 718 | for (auto i = 0; i < data_size; ++i) | ~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:650:12: warning: unused variable ‘curve_type’ [-Wunused-variable] 650 | auto curve_type = (*itCurves)->property("curve_type").toInt(); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:637:8: warning: unused variable ‘data_changed’ [-Wunused-variable] 637 | bool data_changed = false; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::saveData(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:1025:26: warning: unused variable ‘scatter’ [-Wunused-variable] 1025 | QScatter3DSeries * scatter = qobject_cast< QScatter3DSeries * >(curve.second); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.cpp:1020:8: warning: unused variable ‘FirstHistogram’ [-Wunused-variable] 1020 | bool FirstHistogram = true; | ^~~~~~~~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQExtender.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQExtender.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp: In member function ‘QPointF CQMarchingSquares::IsoCell::normalizedPointCCW(side)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp:75:10: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 75 | switch (cellSide) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp: In member function ‘void CQMarchingSquares::isoSubpath(IsoCell*, int, int, levelPaths&, int&, int&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp:548:10: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 548 | switch (prevSide) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQMarchingSquares.cpp:585:14: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 585 | switch (prevSide) | ^ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotColors.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotEditWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotEditWidget.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.cpp: In member function ‘void CQPlotSubwidget::addSpectrum()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.cpp:590:14: warning: variable ‘imax’ set but not used [-Wunused-but-set-variable] 590 | size_t imax; | ^~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQSpectogramWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQSpectogramWidget.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQSpectogramWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQtChartsPlot.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.h:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.h:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.cpp: In member function ‘virtual double CSpectorgramData::value(double, double) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.cpp:342:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 342 | if (xpos == mSizeX) --xpos; | ~~~~~^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CSpectorgramData.cpp:344:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 344 | if (ypos == mSizeY) --ypos; | ~~~~~^~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.cpp: In member function ‘HistoWidget::buttonPressedX()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/HistoWidget.cpp:90:66: warning: ‘nonnull’ argument ‘this’ compared to NULL [-Wnonnull-compare] 90 | while (!(pParent = dynamic_cast< CQPlotSubwidget * >(tmp)) && this) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/curve2dwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/curve2dwidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/curve2dwidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/scrollbar.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/scrollzoomer.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.h:62:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 62 | QLinkedList mListOfUncompletedTags; | ^~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvarlengtharray.h:43, from /usr/include/qt5/QtCore/qmetatype.h:48, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/qiodevice.h:45, from /usr/include/qt5/QtCore/qtextstream.h:43, from /usr/include/qt5/QtXml/qxml.h:64, from /usr/include/qt5/QtXml/QXmlAttributes:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.h:26: /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp: In static member function ‘static void CMathMLToTeX::mNode(QString&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp:183:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 183 | QXmlSimpleReader xmlReader; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp:187:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 187 | QXmlInputSource xmlSource; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp: In static member function ‘static void CMathMLToTeX::mtableNode(QString&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp:210:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 210 | QXmlSimpleReader xmlReader; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CMathMLToTeX.cpp:214:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 214 | QXmlInputSource xmlSource; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.h:62:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 62 | QLinkedList mListOfUncompletedTags; | ^~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvarlengtharray.h:43, from /usr/include/qt5/QtCore/qmetatype.h:48, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/qiodevice.h:45, from /usr/include/qt5/QtCore/qtextstream.h:43, from /usr/include/qt5/QtXml/qxml.h:64, from /usr/include/qt5/QtXml/QXmlAttributes:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.h:26: /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp: In member function ‘virtual bool CStructureParser::startElement(const QString&, const QString&, const QString&, const QXmlAttributes&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp:69:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 69 | QLinkedList< QString >::iterator itL; | ^~~~~~~~~~~ /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp: In member function ‘virtual bool CStructureParser::endElement(const QString&, const QString&, const QString&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/CStructureParser.cpp:337:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 337 | QLinkedList< QString >::iterator itL; | ^~~~~~~~~~~ /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard/wizard.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/AboutDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/AboutDialog.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CColorScale.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CColorScale.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlot2YSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlot2YSelectionDialog.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlot2YSelectionDialog.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlotSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlotSelectionDialog.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiPlotSelectionDialog.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionDialog.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionDialog.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionDialog.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CCopasiSelectionWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CLNAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.cpp:227:58: required from here 227 | dynamic_cast(& mpDataModel->getTaskList()->operator[]("Linear Noise Approximation")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CLNAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultWidget.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNATask.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultWidget.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultWidget.cpp:57:57: required from here 57 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Linear Noise Approximation")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CMCAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.cpp:221:57: required from here 221 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CMCAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultWidget.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCATask.h:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultWidget.cpp:69:57: required from here 69 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQAnalyticsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQAnalyticsWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQAnalyticsWidget.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/analytics/CAnalyticsTask.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQAnalyticsWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidgetDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidgetDM.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseDataModel.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseDataModel.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.cpp:9: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPane.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:16: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:457:91: required from here 457 | updateNode(findNodeFromId(ListViews::WidgetType::SteadyState), mpCopasiDM->getTaskList()->operator[]("Steady-State").getCN()); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp: In member function ‘void CQBrowserPaneDM::createStaticDM()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 993 | switch (pNodeInfo->node) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Compartments’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CompartmentDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Species’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SpeciesDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Reactions’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReactionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘GlobalQuantities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘GlobalQuantityDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Events’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘EventDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterOverview’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterSets’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterSetDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘DifferentialEquations’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Matrices’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Diagrams’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SteadyState’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SteadyStateResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ElementaryModes’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ElementaryModesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MassConservation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MassConservationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourse’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MetabolicControlAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MetabolicControlAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LyapunovExponents’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LyapunovExponentsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeScaleSeparationAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeScaleSeparationAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseSensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseSensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CrossSection’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CrossSectionResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterScan’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Optimization’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘OptimizationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterEstimation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterEstimationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Sensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LinearNoiseApproximation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LinearNoiseApproximationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Oscillation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Plots’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘PlotDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReportTemplates’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReportTemplateDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘FunctionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘UnitDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCheckModelWindow.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCheckModelWindow.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCheckModelWindow.cpp: In constructor ‘CQCheckModelWindow::CQCheckModelWindow(CopasiUI3Window*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCheckModelWindow.cpp:88:47: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 88 | mpSelection->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:32: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQComboDelegate.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentCopyOptions.cpp [ 70%] Linking CXX shared library _COPASI.so cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentDM.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentDM.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentDM.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.cpp: In member function ‘virtual void CQCompartmentsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartmentsWidget.cpp:217:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCopasiApplication.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiException.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCopasiApplication.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCrossSectionTaskWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCrossSectionTaskWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCrossSectionTaskWidget.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCrossSectionTaskWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDateTimeEditDelegate.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependenciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependenciesWidget.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyDialog.cpp:9: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyWidget.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDependencyWidget.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDifferentialEquations.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQDifferentialEquations.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMListWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/elementaryFluxModes/CEFMTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMListWidget.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMNetReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMNetReactionDM.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMNetReactionDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMReactionDM.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMReactionDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMResultWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMSpeciesDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMSpeciesDM.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMSpeciesDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMSpeciesDM.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEFMWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventDM.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.cpp: In member function ‘virtual void CQEventsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventsWidget.cpp:209:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 209 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpandModelData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpandModelData.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpandModelData.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp: In member function ‘void CQExperimentData::slotFileEdit()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:628:10: warning: unused variable ‘i’ [-Wunused-variable] 628 | size_t i = mpExperimentSetCopy->getExperimentCount() - 1; | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp: In member function ‘bool CQExperimentData::saveTable(CExperiment*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentData.cpp:1536:8: warning: variable ‘FoundTime’ set but not used [-Wunused-but-set-variable] 1536 | bool FoundTime = false; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentSelection.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExperimentSelection.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp:51: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp:50: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h: In constructor ‘CQExpressionWidget::CQExpressionWidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:273:15: warning: ‘CQExpressionWidget::mCursor’ will be initialized after [-Wreorder] 273 | QTextCursor mCursor; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:272:28: warning: ‘CQExpressionHighlighter* CQExpressionWidget::mpExpressionHighlighter’ [-Wreorder] 272 | CQExpressionHighlighter *mpExpressionHighlighter; | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.cpp:218:1: warning: when initialized here [-Wreorder] 218 | CQExpressionWidget::CQExpressionWidget(QWidget * parent, const char * name) | ^~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExternalToolDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExternalToolDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExternalToolDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExternalToolDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp: In member function ‘void CQExternalToolDialog::slotItemChanged()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp:189:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 189 | if (mCurrentIndex != index && mCurrentIndex >= 0 && mCurrentIndex < mTools.size()) | ~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp:189:69: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 189 | if (mCurrentIndex != index && mCurrentIndex >= 0 && mCurrentIndex < mTools.size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp: In member function ‘void CQExternalToolDialog::slotUpdateSelected()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalToolDialog.cpp:229:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 229 | if (mCurrentIndex < 0 || mCurrentIndex >= mTools.size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExternalTools.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExternalTools.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExternalTools.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExternalTools.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalTools.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalTools.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalTools.cpp: In member function ‘void CQExternalTool::execute()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExternalTools.cpp:347:12: warning: unused variable ‘omex’ [-Wunused-variable] 347 | auto omex = dm->exportCombineArchive(TO_UTF8(omexFile), true, true, true, true, true); | ^~~~ In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘intialize’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/qt5/QtCore/qbytearray.h:52, from /usr/include/qt5/QtCore/qvariant.h:44, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:25: In member function ‘std::__new_allocator::construct(COptItem**, COptItem* const&)void’, inlined from ‘std::allocator_traits >::construct(std::allocator&, COptItem**, COptItem* const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(COptItem* const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘CQFittingItemWidget::slotNew()’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:1137:25: /usr/include/c++/15/bits/new_allocator.h:191:11: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotNew()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:1119:13: note: ‘pItem’ declared here 1119 | COptItem *pItem; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotParamEdit()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:452:29: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 452 | pItem->setObjectCN(Selection[i]->getCN()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:434:21: note: ‘pItem’ declared here 434 | COptItem *pItem; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotCopy()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:952:15: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 952 | setTableText((int) row, pItem); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingItemWidget.cpp:925:13: note: ‘pItem’ declared here 925 | COptItem *pItem; | ^~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingResult.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CExperimentSet.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:51: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp: In member function ‘void CQFittingResult::loadExperimentSetIntoTree(const CExperimentSet&, QTreeWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:144:20: warning: variable ‘pItem’ set but not used [-Wunused-but-set-variable] 144 | QTreeWidgetItem* pItem = NULL; | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:208:57: required from here 208 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Parameter Estimation")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp: In member function ‘virtual bool CQFittingResult::enterProtected()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:275:32: warning: unused variable ‘Solutions’ [-Wunused-variable] 275 | const CVector< C_FLOAT64 > & Solutions = mpProblem->getSolutionVariables(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:276:32: warning: unused variable ‘StdDeviations’ [-Wunused-variable] 276 | const CVector< C_FLOAT64 > & StdDeviations = mpProblem->getVariableStdDeviations(); | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:277:32: warning: unused variable ‘Gradients’ [-Wunused-variable] 277 | const CVector< C_FLOAT64 > & Gradients = mpProblem->getVariableGradients(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp: In member function ‘void CQFittingResult::loadLog(const COptMethod*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:525:28: warning: unused variable ‘subTextItem’ [-Wunused-variable] 525 | QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.cpp:530:28: warning: unused variable ‘statusDetailItem’ [-Wunused-variable] 530 | QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); | ^~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResultTab1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:43, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResultTab1.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp:52: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp: In member function ‘virtual bool CQFittingWidget::taskFinishedEvent()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingWidget.cpp:316:8: warning: unused variable ‘result’ [-Wunused-variable] 316 | bool result = TaskWidget::taskFinishedEvent(); | ^~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFluxModeDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFluxModeDM.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionDM.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionDM.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionDM.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp: In member function ‘virtual void CQFunctionsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFunctionsWidget.cpp:204:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 204 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.cpp: In member function ‘virtual void CQGlobalQuantitiesWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantitiesWidget.cpp:210:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantityDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantityDM.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantityDM.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantityDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQGlobalQuantityDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLNAWidget.cpp:60:69: required from here 60 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsDM.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLayoutsWidget.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapResultWidget.cpp:77:64: required from here 77 | mpTask = dynamic_cast(&mpDataModel->getTaskList()->operator[]("Lyapunov Exponents")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQLyapWidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMCAWidget.cpp:69:69: required from here 69 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMathMatrixWidget.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5430:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5433:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5436:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMatrixDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMatrixDialog.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMergingData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMergingData.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMergingData.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp: In member function ‘virtual int CQMessageBox::exec()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMessageBox.cpp:454:7: warning: unused variable ‘result’ [-Wunused-variable] 454 | int result = QDialog::exec(); | ^~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelValue.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.h: In constructor ‘CQModelValue::CQModelValue(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.h:70:15: warning: ‘CQModelValue::mObjectCNToCopy’ will be initialized after [-Wreorder] 70 | CCommonName mObjectCNToCopy; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.h:62:17: warning: ‘CModelValue* CQModelValue::mpModelValue’ [-Wreorder] 62 | CModelValue * mpModelValue; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.cpp:50:1: warning: when initialized here [-Wreorder] 50 | CQModelValue::CQModelValue(QWidget* parent, const char* name) | ^~~~~~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidatorUnit.h:17, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMoietiesTaskResult.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/moieties/CMoietiesMethod.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMultipleSelectionDialog.cpp [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNameSelectionDialog.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:63: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp: In member function ‘virtual QValidator::State CQValidatorXML::validate(QString&, int&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:84:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 84 | QXmlSimpleReader Validator; | ^~~~~~~~~ In file included from /usr/include/qt5/QtXml/QXmlInputSource:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:24: /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:85:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 85 | QXmlInputSource Input; | ^~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp: In member function ‘virtual bool CQNotesContentHandler::startElement(const QString&, const QString&, const QString&, const QXmlAttributes&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:152:30: warning: ‘QXmlDefaultHandler’ is deprecated [-Wdeprecated-declarations] 152 | return QXmlDefaultHandler::startElement(namespaceURI, localName, qName, atts); | ^~~~~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:407:49: note: declared here 407 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlDefaultHandler : public QXmlContentHandler, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp: In member function ‘virtual bool CQNotesContentHandler::endElement(const QString&, const QString&, const QString&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.cpp:162:30: warning: ‘QXmlDefaultHandler’ is deprecated [-Wdeprecated-declarations] 162 | return QXmlDefaultHandler::endElement(namespaceURI, localName, qName); | ^~~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:407:49: note: declared here 407 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlDefaultHandler : public QXmlContentHandler, | ^~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:4505:77: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘removeAnalysisEvent’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQEllipseItem::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:90:12: warning: unused variable ‘m11’ [-Wunused-variable] 90 | double m11 = painter->transform().m11(); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQOptPopulation::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:472:34: warning: comparison of integer expressions of different signedness: ‘std::vector*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 472 | if (mPopulation.size() > mMaxIterations) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp: In function ‘QString vec_to_string(CVector*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:541:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 541 | for (int i = 1; i < pVec->size(); ++i) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQOptPopulation::update()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:720:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 720 | i == mMinIndex, | ~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 743 | i == mMinIndex, | ~~^~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:98:57: required from here 98 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Optimization")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp: In member function ‘void CQOptimizationResult::loadLog(const COptMethod*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:191:28: warning: unused variable ‘subTextItem’ [-Wunused-variable] 191 | QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationResult.cpp:196:28: warning: unused variable ‘statusDetailItem’ [-Wunused-variable] 196 | QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); | ^~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOscillationTaskWidget.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp: In member function ‘void CQParameterEstimationResult::applyToModelState()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterEstimationResult.cpp:309:15: warning: unused variable ‘current’ [-Wunused-variable] 309 | int current = model->rowCount(); | ^~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterGroupDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterGroupDM.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterGroupView.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterGroupView.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.h:36:16: warning: ‘virtual void CQBaseTreeDataModel::setFramework(int)’ was hidden [-Woverloaded-virtual=] 36 | virtual void setFramework(int framework); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:63:8: note: by ‘void CQParameterOverviewDM::setFramework(const int&)’ 63 | void setFramework(const int & framework); | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp: In static member function ‘static QVariant CQParameterOverviewDM::diffData(const CModelParameter*, int)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:373:16: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 373 | switch (pNode->getCompareResult()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.cpp:400:16: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 400 | switch (pNode->getCompareResult()) | ^ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.cpp:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.h:36:16: warning: ‘virtual void CQBaseTreeDataModel::setFramework(int)’ was hidden [-Woverloaded-virtual=] 36 | virtual void setFramework(int framework); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:63:8: note: by ‘void CQParameterOverviewDM::setFramework(const int&)’ 63 | void setFramework(const int & framework); | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewWidget.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.cpp:11: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.cpp:13: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitItem.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/parameterFitting/CFitProblem.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterResultItemModel.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsDM.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsDM.cpp: In member function ‘virtual QVariant CQParameterSetsDM::data(const QModelIndex&, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsDM.cpp:91:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 91 | if (mpListOfParameterSets->size() <= index.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.cpp: In member function ‘virtual void CQParameterSetsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterSetsWidget.cpp:222:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.cpp: In member function ‘virtual void CQPlotsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPlotsWidget.cpp:232:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 232 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPreferenceDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPreferenceDialog.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressDialog.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItem.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemBar.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemBar.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemText.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQProgressItemText.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPushButtonDelegate.cpp In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtCore/qabstractitemmodel.h:43, from /usr/include/qt5/QtCore/qabstractproxymodel.h:43, from /usr/include/qt5/QtCore/qsortfilterproxymodel.h:43, from /usr/include/qt5/QtCore/QSortFilterProxyModel:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPushButtonDelegate.cpp:13: In member function ‘QMapNode::lowerBound(QAbstractButton* const&)’, inlined from ‘QMapData::findNode(QAbstractButton* const&) const’ at /usr/include/qt5/QtCore/qmap.h:288:33, inlined from ‘QMap::operator[](QAbstractButton* const&)’ at /usr/include/qt5/QtCore/qmap.h:681:26, inlined from ‘CQPushButtonDelegate::createEditor(QWidget*, QStyleOptionViewItem const&, QModelIndex const&) const’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPushButtonDelegate.cpp:98:25: /usr/include/qt5/QtCore/qmap.h:153:9: warning: ‘pEditor’ may be used uninitialized [-Wmaybe-uninitialized] 153 | if (!qMapLessThanKey(n->key, akey)) { | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPushButtonDelegate.cpp: In member function ‘CQPushButtonDelegate::createEditor(QWidget*, QStyleOptionViewItem const&, QModelIndex const&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQPushButtonDelegate.cpp:58:21: note: ‘pEditor’ was declared here 58 | QAbstractButton * pEditor; | ^~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionDM.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp: In constructor ‘CQReactionsWidget::CQReactionsWidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp:80:22: warning: unused variable ‘pWindow’ [-Wunused-variable] 80 | CopasiUI3Window *pWindow = dynamic_cast(parent->parent()); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp: In member function ‘virtual void CQReactionsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReactionsWidget.cpp:189:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 189 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReportDefinition.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinitionSelect.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinitionSelect.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinitionSelect.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportListItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportListItem.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.cpp: In member function ‘virtual void CQReportsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportsWidget.cpp:189:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 189 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSBMLFileDialog.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLFileDialog.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.h:10, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.h:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h:18: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.h:11, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.cpp:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScrolledDependenciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScrolledDependenciesWidget.cpp:6: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSensResultWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.cpp:85:57: required from here 85 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Sensitivities")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.h: In constructor ‘CQSimpleSelectionTree::CQSimpleSelectionTree(QWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.h:116:40: warning: ‘CQSimpleSelectionTree::mpOutputVector’ will be initialized after [-Wreorder] 116 | std::vector< const CDataObject * > * mpOutputVector; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.h:112:26: warning: ‘CExpressionGenerator* CQSimpleSelectionTree::mpExpressionGenerator’ [-Wreorder] 112 | CExpressionGenerator * mpExpressionGenerator; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:43:1: warning: when initialized here [-Wreorder] 43 | CQSimpleSelectionTree::CQSimpleSelectionTree(QWidget *parent) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSimpleSelectionTree.cpp:426:64: required from here 426 | task = dynamic_cast(&pDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSortFilterProxyModel.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp: In member function ‘bool CQSpecieDM::removeRows(QModelIndexList, const QModelIndex&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpecieDM.cpp:590:10: warning: unused variable ‘numSpecies’ [-Wunused-variable] 590 | size_t numSpecies = mpMetabolites->size(); | ^~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSpeciesDetail.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.cpp:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.cpp: In member function ‘virtual void CQSpeciesWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesWidget.cpp:218:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpinBoxDelegate.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSplashWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSplashWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQStartValueReset.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSteadyStateResult.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.cpp:80:65: required from here 80 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.cpp:87:58: required from here 87 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultWidget.cpp:82:57: required from here 82 | dynamic_cast(&pDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSATimeScaleWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSATimeScaleWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSATimeScaleWidget.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp:224:58: required from here 224 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp: In member function ‘CQTSSAWidget::runTask()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAWidget.cpp:231:30: warning: ‘this’ pointer is null [-Wnonnull] 231 | mpTSSMethod->emptyVectors(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSATask.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tssanalysis/CTSSAMethod.h:157:8: note: in a call to non-static member function ‘CTSSAMethod::emptyVectors()’ 157 | void emptyVectors(); | ^~~~~~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTabWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:32: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTableView.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTableView.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTableWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskBtnWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskHeaderWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskHeaderWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskMethodWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskMethodWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskThread.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiException.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTaskThread.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTextDialog.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQThread.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.cpp:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensTask.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSensWidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesDM.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesDM.cpp:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesWidget.cpp:20: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesWidget.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/crosssection/CCrossSectionTask.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTimeSeriesWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTrajectoryWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTrajectoryWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTrajectoryWidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTrajectoryWidget.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoTester.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTypes.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoTester.cpp:15: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:46, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:63: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:88: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:99: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiGuiTypes.h:98, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoTester.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.h:36:16: warning: ‘virtual void CQBaseTreeDataModel::setFramework(int)’ was hidden [-Woverloaded-virtual=] 36 | virtual void setFramework(int framework); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:63:8: note: by ‘void CQParameterOverviewDM::setFramework(const int&)’ 63 | void setFramework(const int & framework); | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiGuiTypes.h:169: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ChemEqValidator.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiGuiTypes.h:20: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoTester.cpp: In member function ‘void CQUndoTester::testModelDetail()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUndoTester.cpp:163:11: warning: unused variable ‘pModel’ [-Wunused-variable] 163 | CModel* pModel = (*CRootContainer::getDatamodelList())[0].getModel(); | ^~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDM.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDM.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDM.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,--dependency-file=CMakeFiles/binding_python_lib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -shared -Wl,-soname,_COPASI.so -o _COPASI.so CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o ../../libCOPASISE.a -lpython3.13 /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat -lcrossguid2 //usr/lib64/libuuid.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so -lflexiblas gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 78%] Built target binding_python_lib [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /usr/bin/gmake -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 78%] Building CXX object copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -MD -MT copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -MF CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o.d -o CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.cpp:21: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CSparseMatrix.h:148:19: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 148 | public std::iterator< std::forward_iterator_tag, C_FLOAT64, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:31: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:534:25: required from here 534 | size_t imax = TaskList.size(); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp: In function ‘int runScheduledTasks(CProcessReport*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:534:10: warning: unused variable ‘imax’ [-Wunused-variable] 534 | size_t imax = TaskList.size(); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.cpp:26: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp: In function ‘exportSBML()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE/CopasiSE.cpp:836:27: warning: ‘SBMLSchema’ may be used uninitialized [-Wmaybe-uninitialized] 836 | copasi::SBMLSchema_enum SBMLSchema; | ^~~~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 78%] Linking CXX executable CopasiSE cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSE && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSE.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp: In member function ‘virtual void CQUnitsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitsWidget.cpp:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 205 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdateAvogadro.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdatesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdatesWidget.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdatesWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUpdatesWidget.cpp:35: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.cpp:24: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidatorUnit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidatorUnit.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidatorUnit.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanContainerWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanContainerWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.cpp:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRandom.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRandom.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRandom.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRepeat.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRepeat.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRepeat.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetTask.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetTask.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CUpDownSubwidget.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CWindowInterface.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiFileDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiFileDialog.cpp:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiSlider.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiSlider.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiSlider.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:46: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:58: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:84:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 84 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/bits/specfun.h:43, from /usr/include/c++/15/cmath:3913, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiTree.h:169:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 169 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:70: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:36:31: required from here 36 | class CListOfLayouts : public CDataVectorN< CLayout > | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CLayout]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CLayout; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:257:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 257 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:71: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.h: In constructor ‘DataModelGUI::DataModelGUI(QObject*, CDataModel*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.h:185:24: warning: ‘DataModelGUI::mpOutputHandlerPlot’ will be initialized after [-Wreorder] 185 | COutputHandlerPlot * mpOutputHandlerPlot; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.h:184:16: warning: ‘CDataModel* DataModelGUI::mpDataModel’ [-Wreorder] 184 | CDataModel * mpDataModel; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:96:1: warning: when initialized here [-Wreorder] 96 | DataModelGUI::DataModelGUI(QObject * parent, CDataModel * pDataModel) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp: In member function ‘void DataModelGUI::notifyChanges(const CUndoData::CChangeSet&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:831:18: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 831 | switch (it->type) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp: In member function ‘void DataModelGUI::addRecentFile(const std::string&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:968:10: warning: enumeration value ‘OMEX’ not handled in switch [-Wswitch] 968 | switch (mpDataModel->getContentType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DataModelGUI.cpp:968:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DefaultplotDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/DefaultplotDialog.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_FunctionWidget1.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp: In member function ‘bool FunctionWidget1::loadParameterTable()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.cpp:154:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 154 | switch (params[i]->getUsage()) | ^ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/MyLineEdit.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserDialog.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserItem.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserItem.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ObjectBrowserWidget.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:19: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:54: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp: In member function ‘void ReactionsWidget1::FillWidgetFromRI()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:406:35: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 406 | Compartments.insertMulti(Name.toLower(), Name); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:16: /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.cpp:421:35: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 421 | Compartments.insertMulti(Name.toLower(), Name); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ScanWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ScanWidget.cpp:41: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ScanWidget.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanMethod.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanTask.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ScanWidget.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensWidgetComboBox.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensWidgetComboBox.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.cpp:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.cpp:45: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.cpp: In member function ‘void SensitivitiesWidget::initCombos()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.cpp:324:7: warning: unused variable ‘i’ [-Wunused-variable] 324 | int i = 0; | ^ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp:55: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp:66: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp:861:94: required from here 861 | mpParentWindow->getMainWidget()->getTrajectoryWidget()->enter(pDataModel->getTaskList()->operator[]("Time-Course").getCN()); | ^~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp: In member function ‘std::vector* SliderDialog::getCSlidersForObject(CDataObject*, std::vector*) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderDialog.cpp:1087:8: warning: variable ‘issueWarning’ set but not used [-Wunused-but-set-variable] 1087 | bool issueWarning = false; | ^~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderSettingsDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SliderSettingsDialog.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.cpp:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.cpp:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h: In constructor ‘StateSubwidget::StateSubwidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:51:12: warning: ‘StateSubwidget::mpModel’ will be initialized after [-Wreorder] 51 | CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:50:28: warning: ‘const CSteadyStateTask* StateSubwidget::mpTask’ [-Wreorder] 50 | const CSteadyStateTask * mpTask; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.cpp:53:1: warning: when initialized here [-Wreorder] 53 | StateSubwidget::StateSubwidget(QWidget* parent, const char* name) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SteadyStateWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SteadyStateWidget.cpp:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SteadyStateWidget.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSteadyStateResult.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SteadyStateWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/TaskWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/TaskWidget.cpp:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/TaskWidget.cpp:62: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/TaskWidget.cpp:57: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/TaskWidget.cpp:58: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiWidget.cpp:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:64: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:79: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.h:12, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:98: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:35: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:60: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.h: In constructor ‘CopasiUI3Window::CopasiUI3Window()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.h:639:8: warning: ‘CopasiUI3Window::mSBWIgnoreShutdownEvent’ will be initialized after [-Wreorder] 639 | bool mSBWIgnoreShutdownEvent; | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.h:467:11: warning: ‘QMenu* CopasiUI3Window::mpMenuSEDMLSupport’ [-Wreorder] 467 | QMenu * mpMenuSEDMLSupport; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:247:1: warning: when initialized here [-Wreorder] 247 | CopasiUI3Window::CopasiUI3Window(): | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp: In member function ‘void CopasiUI3Window::slotUpdateMIRIAM()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:2673:8: warning: variable ‘success’ set but not used [-Wunused-but-set-variable] 2673 | bool success = true; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:3988:22: required from here 3988 | for (auto & task : taskList) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCopasiTask]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCopasiTask; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp: In member function ‘void CopasiUI3Window::slotStartNewInstance()’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:4210:26: warning: ‘static bool QProcess::startDetached(const QString&)’ is deprecated: Use QProcess::startDetached(const QString &program, const QStringList &arguments) instead [-Wdeprecated-declarations] 4210 | QProcess::startDetached(qApp->applicationFilePath()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QProcess:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:41: /usr/include/qt5/QtCore/qprocess.h:280:17: note: declared here 280 | static bool startDetached(const QString &command); | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp: In member function ‘void CopasiUI3Window::slotCheckForUpdateFinished(bool)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/copasiui3window.cpp:4332:24: warning: unused variable ‘pReject’ [-Wunused-variable] 4332 | QPushButton *pReject = Question.addButton(QMessageBox::Cancel); | ^~~~~~~ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:47: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:49: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:70: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:32: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:114: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMoietiesTaskResult.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:66: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::createWidgetFromId(const WidgetType&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 508 | switch (id) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:508:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::findTabWidgetFromId(const WidgetType&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 841 | switch (id) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Model’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘CompartmentDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘SpeciesDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ReactionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘GlobalQuantityDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘EventDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ParameterOverview’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ParameterSetDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘DifferentialEquations’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Matrices’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Diagrams’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘SteadyState’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘SteadyStateResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ElementaryModes’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ElementaryModesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘MassConservation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘MassConservationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeCourse’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeCourseResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘MetabolicControlAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘MetabolicControlAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘LyapunovExponents’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘LyapunovExponentsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeScaleSeparationAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeScaleSeparationAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeCourseSensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘TimeCourseSensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘CrossSection’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘CrossSectionResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ParameterScan’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Optimization’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘OptimizationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ParameterEstimation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ParameterEstimationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Sensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘SensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘LinearNoiseApproximation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘LinearNoiseApproximationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘Oscillation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘PlotDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘ReportTemplateDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘FunctionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘UnitDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:841:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::findWidgetFromId(const WidgetType&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] 912 | switch (id) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/listviews.cpp:912:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5430:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5433:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5436:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent.isra’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:4505:77: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘removeAnalysisEvent.isra’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/objectdebug.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/objectdebug.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp: In member function ‘void ParameterTable::updateTable(CReactionInterface&, CReaction*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/parametertable.cpp:202:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 202 | switch (ri.getUsage(i)) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp:37: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp: In function ‘QVariant getParameterValue(const CCopasiParameter*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp:73:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 73 | switch (pParameter->getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp: In function ‘QList > getParameterValidValues(const CCopasiParameter*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp:141:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 141 | switch (pParameter->getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp: In function ‘bool setParameterValue(CCopasiParameter*, const QVariant&)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.cpp:215:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 215 | switch (pParameter->getType()) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o -MF CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI/CQIconResource.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp: In member function ‘QVariant CQUndoDM::displayData(const QModelIndex&) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:98:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | if (mpUndoStack->size() <= index.row() || | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:107:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 107 | return (index.row() <= mpUndoStack->currentIndex() && | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:116:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | if ((index.row() <= mpUndoStack->currentIndex() && | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:153:20: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 153 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:197:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 197 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:241:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 241 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:104:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 104 | switch (static_cast< ColumnType >(index.column())) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp: In member function ‘virtual QVariant CQUndoDM::headerData(int, Qt::Orientation, int) const’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDM.cpp:296:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 296 | switch (static_cast< ColumnType >(section)) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/CQUndoDialog.cpp:16: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qrc_copasi.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o -MF CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart/moc_CQ3DBarsModifier.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_BezierCurve.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CArrow.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CCompartmentGraphNode.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CDataEntity.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CGraphCurve.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CGraphNode.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CLabel.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQAutolayoutWizard.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/CQAutolayoutWizard.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQAutolayoutWizard.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQCurrentValueTable.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQLayoutThread.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQPlayerControlWidget.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CQSpringLayoutParameterWindow.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CSimSummaryInfo.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI/moc_CVisParameters.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQCreatorDM.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQMiriamWidget.cpp In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74, inlined from ‘start’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:523:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘start’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQModifiedDM.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQRDFTreeView.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQRDFTreeViewItem.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI/moc_CQReferenceDM.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_BandedGraphWidget.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_C2DCurveData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_C2DPlotCurve.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CBandedGraphData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CHistoCurveData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CLinearColorMap.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_COutputHandlerPlot.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CPlotInterface.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CPlotSpectogram.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQAdvancedPlotSettings.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQCustomPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQCustomPlot.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQCustomPlot.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQDataVizPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQDataVizPlot.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQDataVizPlot.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQExtender.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQMarchingSquares.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotColors.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotEditWidget.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQPlotSubwidget.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQPlotSubwidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQSpectogramWidget.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQtChartsPlot.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQwtPlot.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/CQwtPlot.h:42, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CQwtPlot.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_CSpectorgramData.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_HistoWidget.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_curve2dwidget.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_plotwindow.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/plotwindow.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_plotwindow.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_scrollbar.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI/moc_scrollzoomer.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/moc_CMathMLToTeX.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex/moc_CStructureParser.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_AboutDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CColorScale.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiPlot2YSelectionDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -Wl,--dependency-file=CMakeFiles/CopasiSE.dir/link.d CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -o CopasiSE ../libCOPASISE.a /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat /lib64/libcrossguid2.so //usr/lib64/libuuid.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so /usr/lib64/libflexiblas.so gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 85%] Built target CopasiSE [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiSelectionDialog.cpp /usr/bin/gmake -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 85%] Building CXX object copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -MD -MT copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -MF CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o.d -o CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW/SBWTranslator.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CKeyFactory.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTypes.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW/SBWTranslator.cpp:27: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:46, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:41: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 41 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContext.h:86: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 86 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerContextWithParent.h:45: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 45 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CPointerMathContext.h:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 50 | #pragma omp parallel for In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:30: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CRootContainer.h:14: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:180:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 180 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:571:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 571 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataObject.h:174:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 174 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:813:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 813 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:132:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 132 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:820:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 820 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:40, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CReaction.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMoiety.h:235:8: note: by ‘void CMoiety::add(double, CMetab*)’ 235 | void add(C_FLOAT64 value, CMetab * metabolite); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:160:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 160 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CCompartment.h:52:28: required from here 52 | CDataVectorNS < CMetab > mMetabolites; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CMetab]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CMetab; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:39: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1173:34: required from here 1173 | CDataVectorNS < CCompartment > mCompartments; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CCompartment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CCompartment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1188:30: required from here 1188 | CDataVectorNS< CReaction > mSteps; | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReaction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReaction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1193:26: required from here 1193 | CDataVectorN< CEvent > mEvents; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEvent]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEvent; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1203:31: required from here 1203 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelValue]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelValue; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModel.h:1213:38: required from here 1213 | CDataVectorN< CModelParameterSet > mParameterSets; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CModelParameterSet]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CModelParameterSet; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CUnitDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinitionDB.h:38:16: note: by ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’ 38 | virtual bool add(const CUnitDefinition & src); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CReportDefinition]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CReportDefinition; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CPlotSpecification]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CPlotSpecification; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTimeSeries.h:45:17: note: by ‘CTimeSeries& CTimeSeries::operator=(const CTimeSeries&)’ 45 | CTimeSeries & operator= (const CTimeSeries &); | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:48: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:38: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lyap/CLyapWolfMethod.h:237:15: note: by ‘static void CLyapWolfMethod::add(double*, const double*, const double&, const double*)’ 237 | static void add(C_FLOAT64* dbl1, const C_FLOAT64* dbl1End, | ^~~ [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CCopasiSelectionWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiModelTypes.h:28: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:114:36: warning: ‘virtual const CObjectInterface* CCopasiParameterGroup::getObject(const CCommonName&) const’ was hidden [-Woverloaded-virtual=] 114 | virtual const CObjectInterface * getObject(const CCommonName & cn) const; | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:63: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/optimization/COptItem.h:105:28: note: by ‘const CObjectInterface* COptItem::getObject() const’ 105 | const CObjectInterface * getObject() const; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:88: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiTaskTypes.h:99: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CLNAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CLNAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CLNAResultSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CLNAResultSubwidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 85%] Linking CXX executable CopasiSBW cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSBW.dir/link.txt --verbose=1 [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CLNAResultWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CMCAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CMCAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CMCAResultSubwidget.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CMCAResultSubwidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CMCAResultWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CProgressBar.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CProcessReport.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CProgressBar.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQAnalyticsWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQArrayAnnotationsWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQArrayAnnotationsWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBaseDataModel.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBaseTreeDataModel.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBrowserPane.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQBrowserPaneDM.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCheckModelWindow.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQComboDelegate.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartment.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQCompartment.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartment.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentCopyOptions.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentDM.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCompartmentsWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCopasiApplication.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQCrossSectionTaskWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDateTimeEditDelegate.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependenciesWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependencyDialog.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDependencyWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQDifferentialEquations.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMListWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMNetReactionDM.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMReactionDM.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMResultWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMSpeciesDM.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEFMWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventDM.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventWidget1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventWidget1.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CEventAssignment]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CEventAssignment; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQEventsWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpandModelData.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExperimentData.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExperimentSelection.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExpressionWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalToolDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalToolDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalToolDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalToolDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExternalToolDialog.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalTools.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalTools.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalTools.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalTools.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQExternalTools.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingItemWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQFittingResult.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQFittingResult.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingResult.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘intialize’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingResultTab1.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFittingWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFluxModeDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFunctionDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQFunctionsWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQGlobalQuantityDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLNAWidget.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLayoutsDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLayoutsWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLyapResultWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQLyapWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMCAWidget.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMathMatrixWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMathMatrixWidget.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMathMatrixWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMathMatrixWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMatrixDialog.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMergingData.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMessageBox.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMmlScrollView.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelValue.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelValue.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelValue.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelValue.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQModelWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQModelWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQModelWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMoietiesTaskResult.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQMoietiesTaskResult.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMoietiesTaskResult.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMoietiesTaskResult.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMoietiesTaskWidget.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQMultipleSelectionDialog.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQNameSelectionDialog.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQNotes.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQNotes.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptPopulation.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptPopulation.h:27, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptPopulation.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptimizationResult.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptimizationWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOptimizationWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQOscillationTaskWidget.cpp In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5430:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5433:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5436:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterEstimationResult.cpp In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:4505:77: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘removeAnalysisEvent’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterGroupDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterGroupView.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterOverviewDM.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterOverviewDM.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQBaseTreeDataModel.h:36:16: warning: ‘virtual void CQBaseTreeDataModel::setFramework(int)’ was hidden [-Woverloaded-virtual=] 36 | virtual void setFramework(int framework); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQParameterOverviewDM.h:63:8: note: by ‘void CQParameterOverviewDM::setFramework(const int&)’ 63 | void setFramework(const int & framework); | ^~~~~~~~~~~~ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterOverviewWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterResultItemModel.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterSetsDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQParameterSetsWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPlotDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPlotsWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPreferenceDialog.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressDialog.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItem.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItemBar.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQProgressItemText.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQPushButtonDelegate.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReactionDM.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReactionsWidget.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDM.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQReportDefinition.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQReportDefinition.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDefinition.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportDefinitionSelect.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportListItem.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQReportsWidget.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSBMLFileDialog.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSEDMLFileDialog.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSEDMLImportDialog.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.h:10, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSEDMLImportDialog.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSEDMLImportDialog.h:12: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSEDMLImportDialog.h:18: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQScanWidgetParameterSet.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQScanWidgetParameterSet.h:11, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQScanWidgetParameterSet.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterGroup.h:174:33: warning: ‘virtual const CModelParameter::CompareResult& CModelParameterGroup::diff(const CModelParameter&, const CCore::Framework&, const bool&)’ was hidden [-Woverloaded-virtual=] 174 | const virtual CompareResult & diff(const CModelParameter& other, | ^~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/model/CModelParameterSet.h:194:25: note: by ‘const CModelParameter::CompareResult& CModelParameterSet::diff(const CModelParameterSet&, const CCore::Framework&, const bool&)’ 194 | const CompareResult & diff(const CModelParameterSet & other, | ^~~~ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQScrolledDependenciesWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSensResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSensResultWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSensResultWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSensResultWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSimpleSelectionTree.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSortFilterProxyModel.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpecieDM.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpeciesDetail.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSpeciesDetail.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSpeciesDetail.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpeciesDetail.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpeciesWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSpinBoxDelegate.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSplashWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQStartValueReset.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSteadyStateResult.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQSteadyStateResult.h:22, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQSteadyStateResult.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQSteadyStateResult.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAResultSubWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAResultSubWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAResultWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSATimeScaleWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQTSSATimeScaleWidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSATimeScaleWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTSSAWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTabWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTableView.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTableWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskBtnWidget.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -rdynamic -Wl,--dependency-file=CMakeFiles/CopasiSBW.dir/link.d CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -o CopasiSBW ../libCOPASISE.a //usr/lib64/libSBW.so -lpthread -lz /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat -lcrossguid2 //usr/lib64/libuuid.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so -lflexiblas -lz gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [ 94%] Built target CopasiSBW [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskHeaderWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskMethodWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTaskThread.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTextDialog.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQThread.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSensWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSeriesDM.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTimeSeriesWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQTrajectoryWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUndoTester.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitDM.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitDetail.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQUnitDetail.h:21, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitDetail.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUnitsWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUpdateAvogadro.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQUpdatesWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQValidator.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQValidatorUnit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQValidatorUnit.h:16, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CQValidatorUnit.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanContainerWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanItemData.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRandom.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRandom.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRandom.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRepeat.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetRepeat.h:23, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetRepeat.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetScan.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/scan/CScanProblem.h:34, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanItemData.h:15, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CScanWidgetScan.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetScan.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CScanWidgetTask.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CUpDownSubwidget.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CWindowInterface.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ChemEqValidator.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiFileDialog.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiGuiTypes.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiSlider.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_DataModelGUI.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CopasiSlider.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_CopasiSlider.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_DefaultplotDialog.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_FunctionWidget1.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_FunctionWidget1.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/FunctionWidget1.h:28, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_FunctionWidget1.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_MyLineEdit.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserItem.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ObjectBrowserWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ReactionsWidget1.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ScanWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameterGroup.h:32, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:512, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:31, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_ReactionsWidget1.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQExpressionWidget.h:40: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiParameter.h:32: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SensWidgetComboBox.cpp /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:195:18: warning: ‘virtual CIssue CEvaluationTree::compile()’ was hidden [-Woverloaded-virtual=] 195 | virtual CIssue compile(); | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CExpression.h:96:18: note: by ‘virtual CIssue CExpression::compile(CObjectInterface::ContainerList)’ 96 | virtual CIssue compile(CObjectInterface::ContainerList listOfContainer = | ^~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_ReactionsWidget1.h:19: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SensitivitiesWidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiProblem.h:38, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/sensitivities/CSensProblem.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/SensitivitiesWidget.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SensitivitiesWidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SliderDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SliderSettingsDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_StateSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:25, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/StateSubwidget.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_StateSubwidget.cpp:10: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_SteadyStateWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_TaskWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_copasiWidget.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_copasiui3window.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_listviews.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_objectdebug.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_parametertable.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/moc_qtUtilities.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o -MF CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/resourcesUI/moc_CQIconResource.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard/moc_wizard.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationControls.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationSettingsEditor.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQAnimationWindow.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiAnimation.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiEffect.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQCopasiGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQEffectDescription.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQEffectDescriptionEdit.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQElementProperties.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLabelGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLayoutScene.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQLayoutView.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQRenderConverter.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQRoundedRect.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQStyledGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout/moc_CQZoomableView.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/moc_CQUndoDM.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI/moc_CQUndoDialog.cpp [100%] Linking CXX static library libCOPASIUI.a cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/cmake -P CMakeFiles/libCOPASIUI.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi && /usr/bin/cmake -E cmake_link_script CMakeFiles/libCOPASIUI.dir/link.txt --verbose=1 /usr/bin/ar qc libCOPASIUI.a CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExternalToolDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQExternalTools.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalToolDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExternalTools.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o /usr/bin/ranlib libCOPASIUI.a gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [100%] Built target libCOPASIUI /usr/bin/gmake -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI/CMakeFiles/CopasiUI.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/gmake -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [100%] Building CXX object copasi/CopasiUI/CMakeFiles/CopasiUI.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/-I/usr/include/numl -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/barChart -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/layoutUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/plotUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/tex -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/wizard -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/qlayout -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoFramework -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/undoUI -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CopasiUI/CMakeFiles/CopasiUI.dir/main.cpp.o -MF CMakeFiles/CopasiUI.dir/main.cpp.o.d -o CMakeFiles/CopasiUI.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI/main.cpp In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/utilities/CCopasiMessage.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:20, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathUpdateSequence.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/output/COutputHandler.h:18, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:19, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI/main.cpp:42: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:110: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 110 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:129: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 129 | #pragma omp parallel for /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/OpenMP/CContext.h:148: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 148 | #pragma omp parallel for reduction(& : equal) In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationNode.h:623, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI/main.cpp:44: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunctionParameter]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunctionParameter; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiDataModel/CDataModel.h:18: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:144:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 144 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionParameters.h:98:8: note: by ‘void CFunctionParameters::add(const CFunctionParameter&)’ 98 | void add(const CFunctionParameter & parameter); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:59:30: required from here 59 | CDataVectorN < CFunction > mLoadedFunctions; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:671:16: warning: ‘void CDataVector::remove(const size_t&) [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 671 | virtual void remove(const size_t & index) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:698:16: warning: ‘bool CDataVector::remove(CDataObject*) [with CType = CFunction]’ was hidden [-Woverloaded-virtual=] 698 | virtual bool remove(CDataObject * pObject) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1249:16: note: by ‘void CDataVectorN::remove(const std::string&) [with CType = CFunction; std::string = std::__cxx11::basic_string]’ 1249 | virtual void remove(const std::string & name) | ^~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CDataContainer.h:137:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 137 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [100%] Linking CXX executable CopasiUI cd /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiUI.dir/link.txt --verbose=1 /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:40:7: warning: type ‘struct CQMmlScrollView’ violates the C++ One Definition Rule [-Wodr] 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:40:7: note: a different type is defined in another translation unit 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:51:16: note: the first difference of corresponding definitions is field ‘mpMmlWidget’ 51 | QtMmlWidget* mpMmlWidget; | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:40:7: note: a type with different number of fields is defined in another translation unit 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:46:3: warning: type of ‘__dt_del ’ does not match original declaration [-Wlto-type-mismatch] 46 | ~CQMmlScrollView(); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp:58:1: note: ‘__dt_del ’ was previously declared here 58 | CQMmlScrollView::~CQMmlScrollView() | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp:58:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.h:46:3: warning: type of ‘__dt_comp ’ does not match original declaration [-Wlto-type-mismatch] 46 | ~CQMmlScrollView(); | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp:58:1: note: ‘__dt_comp ’ was previously declared here 58 | CQMmlScrollView::~CQMmlScrollView() | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/UI/CQMmlScrollView.cpp:58:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74, inlined from ‘start’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:523:23: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘start’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5430:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5433:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:5436:17: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/15/new: In member function ‘relocate’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent.isra’ at /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/math/CMathContainer.cpp:4505:77: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new: In member function ‘removeAnalysisEvent.isra’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/lapack -I/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -Wl,--dependency-file=CMakeFiles/CopasiUI.dir/link.d CMakeFiles/CopasiUI.dir/main.cpp.o -o CopasiUI ../libCOPASIUI.a /usr/lib64/libQt5Concurrent.so.5.15.16 /usr/lib64/libQt5Network.so.5.15.16 /usr/lib64/libQt5OpenGL.so.5.15.16 /usr/lib64/libQt5PrintSupport.so.5.15.16 /usr/lib64/libQt5Svg.so.5.15.16 /usr/lib64/libQt5Widgets.so.5.15.16 /usr/lib64/libQt5Xml.so.5.15.16 /usr/lib64/libQt5DataVisualization.so.5.15.16 /usr/lib64/libQt5Gui.so.5.15.16 /usr/lib64/libQt5Core.so.5.15.16 ../libCOPASISE.a /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat /lib64/libcrossguid2.so //usr/lib64/libuuid.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so /usr/lib64/libflexiblas.so /usr/lib64/libqwt-qt5.so /usr/lib64/libmml.so /usr/lib64/libqcustomplot-qt5.so /usr/lib64/libGL.so /usr/lib64/libGLU.so //usr/lib64/libSBW.so gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' [100%] Built target CopasiUI gmake[1]: Leaving directory '/builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iaqQ88 + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + '[' /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT ++ dirname /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT + mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build + mkdir /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-298 + DESTDIR=/builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT + /usr/bin/cmake --install . -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/_COPASI.so -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi.pth -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/COPASI.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/add_optitems.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/checkModel.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/custom_output.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example1.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example2.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example3.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example4.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example5.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example6.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example7.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example8.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/example9.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/get_steady_state.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/print_model_parameterset.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/process_callback.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/remove_reaction.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/remove_unused_elements.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/restore_names.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/run_mca.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/setup_sensitivities.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/to_local_parameters.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples/write_ids_to_names.py -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/bin/CopasiSE -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/bin/CopasiUI -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/bin/CopasiSBW -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step1.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step2.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step3.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step4.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step5.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/TutWiz-Step6.html -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ModelSettingsDialog.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/NewPlotAdded.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ObjectBrowserSelection.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ObjectBrowserTree.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/OutputAssistant.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/PlotCurveSelectionDialog.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/PlotDefinition.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/PlotWindow.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ReactionDialog.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ReactionOverview.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ReactionOverviewEmpty.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/ReportDefinitionDialog.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/doc/html/figures/TimeCourseDialog.png -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/CircadianClock.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/DimericMWC-stiff.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/Genetic-2000Elo.xml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/MAPK-HF96-layout.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/Metabolism-2000Poo.xml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/NF-kappaB-model.xml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/NF-kappaB.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/NF-kappaB.sedml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/Olsen2003_peroxidase.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/YeastGlycolysis.gps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/brusselator-model.xml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/brusselator.cps -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/brusselator.sedml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/oscli.xml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/examples/scan.sedml -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/icons/copasi/icons/Copasi.ico -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/icons/copasi/icons/CopasiDoc.ico -- Installing: /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/copasi/config/MIRIAMResources.xml + rm -rf /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/examples + install -pm 644 copasi/UI/icons/Copasi48-Alpha.xpm /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/icons/copasi/icons + mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/applications + cat + mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/metainfo + install -pm 644 /builddir/build/SOURCES/COPASI.appdata.xml /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/metainfo/ + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.45.298-3.fc43 --unique-debug-suffix -4.45.298-3.fc43.x86_64 --unique-debug-src-base COPASI-4.45.298-3.fc43.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298 find-debuginfo: starting Extracting debug info from 4 files DWARF-compressing 4 files sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/COPASI-4.45.298-3.fc43.x86_64 cpio: copasi/CChemEqParser.ypp: Cannot stat: No such file or directory cpio: copasi/CChemEqParser_lex.cpp: Cannot stat: No such file or directory cpio: copasi/CChemEqParser_yacc.cpp: Cannot stat: No such file or directory cpio: copasi/CEvaluationParser.ypp: Cannot stat: No such file or directory cpio: copasi/CEvaluationParser_yacc.cpp: Cannot stat: No such file or directory cpio: copasi/CUnitParser.ypp: Cannot stat: No such file or directory cpio: copasi/CUnitParser_lex.cpp: Cannot stat: No such file or directory cpio: copasi/CUnitParser_yacc.cpp: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/CopasiDataModel/CDataModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/CopasiDataModel/CInfo.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/CopasiSBW/SBWTranslator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/CopasiSE/CopasiSE.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/CopasiUI/main.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CBiologicalDescription.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CConstants.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CCreator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CMIRIAMResource.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CModelMIRIAMInfo.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CModified.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFGraph.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFGraphConverter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFLiteral.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFObject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFPredicate.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFSubject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFTriplet.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CRDFUtilities.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAM/CReference.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQCreatorDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQMiriamWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQModifiedDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQRDFTreeView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQRDFTreeViewItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/MIRIAMUI/CQReferenceDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/OpenMP/CContext.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/OpenMP/CMathContext.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/OpenMP/CRandomContext.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/AboutDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CColorScale.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CCopasiPlot2YSelectionDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CCopasiPlotSelectionDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CCopasiSelectionDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CCopasiSelectionWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CLNAResultSubwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CLNAResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CMCAResultSubwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CMCAResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CProgressBar.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQArrayAnnotationsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQArrayAnnotationsWidgetDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQBaseDataModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQBaseTreeDataModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQBrowserPane.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQBrowserPaneDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCheckModelWindow.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQComboDelegate.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCompartment.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCompartmentCopyOptions.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCompartmentDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCompartmentsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCopasiApplication.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQCrossSectionTaskWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQDependenciesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQDependencyDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQDependencyWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQDifferentialEquations.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMListWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMNetReactionDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMReactionDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMSpeciesDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEFMWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEventDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEventWidget1.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQEventsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExpandModelData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExperimentData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExperimentSelection.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExpressionMmlStackedWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExpressionWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExternalToolDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQExternalTools.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFittingItemWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFittingResult.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFittingResultTab1.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFittingWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFluxModeDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFunctionDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQFunctionsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQGlobalQuantitiesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQGlobalQuantityDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQLNAWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQLayoutsDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQLayoutsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQLyapResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQLyapWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMCAWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMathMatrixWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMatrixDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMergingData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMessageBox.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMmlScrollView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQModelValue.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQModelWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMoietiesTaskResult.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMoietiesTaskWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQMultipleSelectionDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQNameSelectionDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQNotes.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQOptPopulation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQOptimizationResult.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQOptimizationWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterEstimationResult.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterGroupDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterGroupView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterOverviewDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterOverviewWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterResultItemModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterSetsDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQParameterSetsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQPlotDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQPlotsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQPreferenceDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQProgressDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQProgressItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQProgressItemBar.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQProgressItemText.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQPushButtonDelegate.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReactionDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReactionsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReportDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReportDefinition.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReportDefinitionSelect.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReportListItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQReportsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSBMLFileDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSEDMLFileDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSEDMLImportDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQScanWidgetParameterSet.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQScrolledDependenciesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSensResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSimpleSelectionTree.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSortFilterProxyModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSpecieDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSpeciesDetail.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSpeciesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSplashWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQStartValueReset.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQSteadyStateResult.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTSSAResultSubWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTSSAResultWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTSSATimeScaleWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTSSAWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTabWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTableView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTableWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTaskBtnWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTaskHeaderWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTaskMethodWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTaskThread.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTextDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQThread.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTimeSensWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTimeSeriesDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTimeSeriesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQTrajectoryWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQUndoTester.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQUnitDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQUnitDetail.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQUnitsWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQUpdateAvogadro.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQValidator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CQValidatorUnit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanContainerWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanItemData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanWidgetRandom.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanWidgetRepeat.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanWidgetScan.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CScanWidgetTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CUpDownSubwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CWindowInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CopasiFileDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/CopasiSlider.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/DataModelGUI.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/DefaultplotDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/FunctionWidget1.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/MyLineEdit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/ObjectBrowserDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/ObjectBrowserItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/ObjectBrowserWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/ReactionsWidget1.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/ScanWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/SensWidgetComboBox.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/SensitivitiesWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/SliderDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/SliderSettingsDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/StateSubwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/SteadyStateWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/TaskWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/copasiWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/copasiui3window.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/listviews.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/objectdebug.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/parametertable.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/UI/qtUtilities.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/barChart/CQ3DBarsModifier.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/bindings/common/downcast_common.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/bindings/common/local_common.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/bindings/python/local.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/commandline/CConfigurationFile.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/commandline/CLocaleString.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/commandline/COptionParser.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/commandline/COptions.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalBase.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalCall.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalChoice.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalChoiceLogical.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalFraction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalFunction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalGeneralPower.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalItemPower.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalLcm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalLogical.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalLogicalItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalProduct.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalSum.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/CNormalTranslation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/ConvertToCEvaluationNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/compareExpressions/compare_utilities.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CArray.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CArrayElementReference.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CCommonName.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CCore.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataArray.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataContainer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataObject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataObjectMap.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataString.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CDataTimer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CObjectInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CRegisteredCommonName.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/core/CRootContainer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/crosssection/CCrossSectionMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/crosssection/CCrossSectionProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/crosssection/CCrossSectionTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CBitPatternMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CBitPatternTree.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CBitPatternTreeNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CEFMAlgorithm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CEFMMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CEFMProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CEFMTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CFluxMode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CFluxScore.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CStepMatrix.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CStepMatrixColumn.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CTableauLine.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CTableauMatrix.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/elementaryFluxModes/CZeroSet.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CCallParameters.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CDerive.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationLexer_lex.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeCall.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeChoice.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeConstant.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeDelay.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeFunction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeLogical.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeNumber.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeObject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeOperator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeStructure.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeUnit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeVariable.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeVector.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationNodeWhiteSpace.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationParser_yacc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CEvaluationTree.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CExpression.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CFunction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CFunctionAnalyzer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CFunctionDB.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CFunctionParameter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CFunctionParameters.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CKinFunction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CMassAction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/CNodeK.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/function/FunctionDB.xml.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CAbstractLayoutInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CCopasiSpringLayout.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLBase.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLColorDefinition.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLCurve.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLDefaultStyles.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLEllipse.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGlobalRenderInformation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGlobalStyle.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGlyphs.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGradientBase.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGradientStop.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGraphicalObject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGraphicalPrimitive1D.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGraphicalPrimitive2D.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLGroup.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLImage.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLLineEnding.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLLinearGradient.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLLocalRenderInformation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLLocalStyle.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLPolygon.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRadialGradient.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLReactionGlyph.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRectangle.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRelAbsVector.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderCubicBezier.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderCurve.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderFlattener.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderInformationBase.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderPoint.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLRenderResolver.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLStyle.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLText.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLTransformation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLTransformation2D.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLUnresolvedReferenceException.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLayout.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLayoutEngine.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CLayoutState.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/CListOfLayouts.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layout/SBMLDocumentLoader.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layoutUI/CQAutolayoutWizard.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layoutUI/CQLayoutThread.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/layoutUI/CQSpringLayoutParameterWindow.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lna/CLNAMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lna/CLNAProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lna/CLNATask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lyap/CLyapMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lyap/CLyapProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lyap/CLyapTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/lyap/CLyapWolfMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CJitCompiler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CJitCompilerImplementation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathContainer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathDelay.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathDependencyGraph.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathDependencyNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathDependencyNodeIterator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathEvent.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathEventQueue.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathExpression.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathHistory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathObject.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathReaction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/math/CMathUpdateSequence.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CAnnotation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEq.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEqElement.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEqInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEqParser.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEqParser_lex.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CChemEqParser_yacc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CCompartment.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CEvent.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CMMLOutput.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CMetab.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CMetabNameInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModel.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelAnalyzer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelExpansion.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelParameter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelParameterGroup.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelParameterSet.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CModelValue.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CMoiety.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CObjectLists.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CReaction.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CReactionInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/model/CState.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/moieties/CMoietiesMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/moieties/CMoietiesProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/moieties/CMoietiesTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/CInternalSolver.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/CLSODA.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/CLSODAR.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/CRadau5.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/CRadau5.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/Cxerrwd.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/common.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dbnorm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dc_decsol.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dcfode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/decsol.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dewset.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dfnorm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dintdy.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dmnorm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dprja.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/drcheck.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dsolsy.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/odepack++/dstoda.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/CNL2SOL.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptLog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptLogEntry.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptLogItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodCoranaWalk.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodDE.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodEP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodGA.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodGASR.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodHookeJeeves.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodLevenbergMarquardt.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodNL2SOL.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodNelderMead.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodPS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodPraxis.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodSA.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodSRES.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodSS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodStatistics.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodSteepestDescent.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptMethodTruncatedNewton.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptPopulationMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/COptTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/CPraxis.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/CRandomSearch.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/optimization/CTruncatedNewton.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/output/COutputHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CExperiment.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CExperimentFileInfo.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CExperimentObjectMap.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CExperimentSet.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CFitItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CFitProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/parameterFitting/CFitTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plot/COutputDefinitionVector.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plot/CPlotColors.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plot/CPlotItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plot/CPlotSpecification.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/BandedGraphWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/C2DCurveData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/C2DPlotCurve.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CBandedGraphData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CHistoCurveData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CLinearColorMap.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/COutputHandlerPlot.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CPlotInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CPlotSpectogram.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQAdvancedPlotSettings.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQCustomPlot.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQDataVizPlot.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQExtender.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQMarchingSquares.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQPlotColors.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQPlotEditWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQPlotSubwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQSpectogramWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CQwtPlot.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/CSpectorgramData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/HistoWidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/curve2dwidget.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/plotwindow.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/scrollbar.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/plotUI/scrollzoomer.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQAnimationControls.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQAnimationSettingsEditor.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQAnimationWindow.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQConnectionGraphicsItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQCopasiAnimation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQCopasiEffect.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQCopasiGraphicsItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQEffectDescription.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQEffectDescriptionEdit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQElementProperties.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQLabelGraphicsItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQLayoutScene.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQLayoutView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQRenderConverter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQRoundedRect.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQStyledGraphicsItem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/qlayout/CQZoomableView.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/randomGenerator/CPermutation.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/randomGenerator/CRandom.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/randomGenerator/Cmt19937.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/randomGenerator/Cr250.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/CDataHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/CKeyFactory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/COutputAssistant.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/CReport.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/CReportDefinition.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/report/CReportDefinitionVector.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/resourcesUI/CQIconResource.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/CCellDesignerImporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/CSBMLExporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/ConverterASTNode.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/SBMLImporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/SBMLIncompatibility.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/SBMLUnitSupport.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sbml/SBMLUtils.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/scan/CScanMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/scan/CScanProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/scan/CScanTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sedml/CSEDMLExporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sedml/SEDMLImporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sedml/SEDMLUtils.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sensitivities/CSensMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sensitivities/CSensProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/sensitivities/CSensTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CEigen.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CMCAMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CMCAProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CMCATask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CNewtonMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CSteadyStateMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CSteadyStateProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/steadystate/CSteadyStateTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tex/CMathMLToTeX.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tex/CStructureParser.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/timesens/CTimeSensLsodaMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/timesens/CTimeSensMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/timesens/CTimeSensProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/timesens/CTimeSensTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CHybridMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CHybridMethodODE45.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CHybridNextReactionRKMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CLsodaMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CRadau5Method.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CRootFinder.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CRungeKutta.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CStochDirectMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CStochMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CStochNextReactionMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CStochasticRungeKuttaRI5.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTauLeapMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTimeSeries.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTrajAdaptiveSA.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTrajectoryMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTrajectoryProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/trajectory/CTrajectoryTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tss/CODEExporter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tss/CODEExporterBM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tss/CODEExporterC.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tss/CODEExporterXPPAUT.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CCSPMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CILDMMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CILDMModifiedMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CTSSAMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CTSSAProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/tssanalysis/CTSSATask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undo/CData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undo/CDataValue.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undo/CUndoData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undo/CUndoObjectInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undo/CUndoStack.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undoUI/CQUndoDM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/undoUI/CQUndoDialog.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CBaseUnit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CBrent.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiException.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiMessage.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiMethod.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiParameter.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiParameterGroup.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiProblem.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CCopasiTask.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CDependencyGraph.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CDirEntry.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CExpressionGenerator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CIndexedPriorityQueue.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CLeastSquareSolution.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CLinkMatrix.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CMethodFactory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CParameterEstimationUtils.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CProblemFactory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CProcessReport.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CReadConfig.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CSlider.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CTableCell.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CTaskEnum.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CTaskFactory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitComponent.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitDefinition.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitDefinitionDB.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitParser.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitParser_lex.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitParser_yacc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CUnitValidator.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CValidatedUnit.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CValidity.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CVersion.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/Cmd5.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/CopasiTime.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/dgemm.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/utilities/utility.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/wizard/wizard.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/CCopasiXML.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/CCopasiXMLInterface.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/CExpat.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/CGroupXML.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/AssignmentHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/BoundingBoxHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/COPASIHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CXMLHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CXMLHandlerFactory.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CXMLParser.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CXMLParserData.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CallParameterHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ChannelSpecHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CharacterDataHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ColorDefinitionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CommentHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CompartmentGlyphHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CompartmentHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ConstantHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CubicBezierHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/CurveHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/DimensionsHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/EllipseHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/EventHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/FunctionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/GUIHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/GradientStopHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/GroupHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ImageHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/InitialStateHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/KineticLawHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/LayoutHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/LineEndingHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/LineSegmentHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/LinearGradientHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ListOfCurveSegmentsHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ListOfHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ListOfLayoutsHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MathMLHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MetaboliteGlyphHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MetaboliteHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MethodHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/MiriamAnnotationHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModelHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModelParameterGroupHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModelParameterHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModelParameterSetHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModelValueHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ModifierHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ObjectHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ParameterDescriptionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ParameterGroupHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ParameterHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ParameterTextHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/PlotItemHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/PlotSpecificationHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/PointHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/PolygonHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ProductHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RadialGradientHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ReactionGlyphHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ReactionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RectangleHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RenderCurveElementHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RenderCurveHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RenderInformationHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/RenderTextHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ReportDefinitionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ReportSectionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/ReportTargetHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/SBMLMapHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/SliderHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/SourceParameterHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/StateTemplateHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/StateTemplateVariableHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/StyleHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/SubstrateHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/TableHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/TaskHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/TextGlyphHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/UNKNOWNHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/UnitDefinitionHandler.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/COPASI-4.45.298-3.fc43.x86_64/copasi/xml/parser/UnsupportedAnnotationHandler.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/lib64/python3.13/site-packages/copasi/__pycache__/COPASI.cpython-313.pyc: rewriting with normalized contents Scanned 87 directories and 1745 files, processed 7 inodes, 1 modified (0 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/COPASI-4.45.298-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MvKF58 + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-298 + desktop-file-validate /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/applications/COPASI.desktop + appstream-util validate-relax --nonet /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/metainfo/COPASI.appdata.xml /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/metainfo/COPASI.appdata.xml: OK + RPM_EC=0 ++ jobs -p + exit 0 Processing files: COPASI-4.45.298-3.fc43.x86_64 Provides: COPASI = 4.45.298-3.fc43 COPASI(x86-64) = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Obsoletes: COPASI-sharp < 0:4.25.213-1 R-COPASI < 0:4.25.213-1 perl-COPASI < 0:4.25.213-1 Processing files: COPASI-gui-4.45.298-3.fc43.x86_64 Provides: COPASI-gui = 4.45.298-3.fc43 COPASI-gui(x86-64) = 4.45.298-3.fc43 application() application(COPASI.desktop) metainfo() metainfo(COPASI.appdata.xml) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5DataVisualization.so.5()(64bit) libQt5DataVisualization.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5PrintSupport.so.5()(64bit) libQt5PrintSupport.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libQt5Xml.so.5()(64bit) libQt5Xml.so.5(Qt_5)(64bit) libSBW.so.2.12()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmml.so.2()(64bit) libqcustomplot-qt5.so.2()(64bit) libqwt-qt5.so.6.2()(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: COPASI-data-4.45.298-3.fc43.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.vaCr5R + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + cd COPASI-Build-298 + LICENSEDIR=/builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/ArtisticLicense.txt /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: COPASI-data = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-COPASI-4.45.298-3.fc43.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FFXinj + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + cd COPASI-Build-298 + LICENSEDIR=/builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/ArtisticLicense.txt /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-COPASI = 4.45.298-3.fc43 python3-COPASI = 4.45.298-3.fc43 python3-COPASI(x86-64) = 4.45.298-3.fc43 python3.13-COPASI = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpython3.13.so.1.0()(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-COPASI < 4.45.298-3.fc43 python2-COPASI < 0:4.25.213-1 Processing files: COPASI-doc-4.45.298-3.fc43.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.LdaYWK + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + cd COPASI-Build-298 + LICENSEDIR=/builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-4.45.298-build/COPASI-Build-298/copasi/ArtisticLicense.txt /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: COPASI-doc = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debugsource-4.45.298-3.fc43.x86_64 Provides: COPASI-debugsource = 4.45.298-3.fc43 COPASI-debugsource(x86-64) = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debuginfo-4.45.298-3.fc43.x86_64 Provides: COPASI-debuginfo = 4.45.298-3.fc43 COPASI-debuginfo(x86-64) = 4.45.298-3.fc43 debuginfo(build-id) = 271e61200d95fb102cca79bbb0079f8332e6ccab Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(x86-64) = 4.45.298-3.fc43 Processing files: COPASI-gui-debuginfo-4.45.298-3.fc43.x86_64 Provides: COPASI-gui-debuginfo = 4.45.298-3.fc43 COPASI-gui-debuginfo(x86-64) = 4.45.298-3.fc43 debuginfo(build-id) = 60eaa1d0de82966a0021f371c38f080c4ca31714 debuginfo(build-id) = 669b84b892664bc3d740f187e598ec2b4c811b04 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(x86-64) = 4.45.298-3.fc43 Processing files: python3-COPASI-debuginfo-4.45.298-3.fc43.x86_64 Provides: debuginfo(build-id) = beba6e583a7b04d82030a93fd662deed718ca0cc python-COPASI-debuginfo = 4.45.298-3.fc43 python3-COPASI-debuginfo = 4.45.298-3.fc43 python3-COPASI-debuginfo(x86-64) = 4.45.298-3.fc43 python3.13-COPASI-debuginfo = 4.45.298-3.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(x86-64) = 4.45.298-3.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/COPASI-4.45.298-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-COPASI-debuginfo-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-debuginfo-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-gui-debuginfo-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-gui-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-debugsource-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-4.45.298-3.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/COPASI-data-4.45.298-3.fc43.noarch.rpm Wrote: /builddir/build/RPMS/COPASI-doc-4.45.298-3.fc43.noarch.rpm Wrote: /builddir/build/RPMS/python3-COPASI-4.45.298-3.fc43.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.rwC9mV + umask 022 + cd /builddir/build/BUILD/COPASI-4.45.298-build + test -d /builddir/build/BUILD/COPASI-4.45.298-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/COPASI-4.45.298-build + rm -rf /builddir/build/BUILD/COPASI-4.45.298-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild COPASI-4.45.298-3.fc43.src.rpm Finish: build phase for COPASI-4.45.298-3.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1747326677.647336/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/COPASI-4.45.298-3.fc43.src.rpm) Config(child) 37 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "COPASI-gui-debuginfo", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "python3-COPASI", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "COPASI-debugsource", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "COPASI", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "COPASI-gui", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "COPASI-doc", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "noarch" }, { "name": "COPASI-debuginfo", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "python3-COPASI-debuginfo", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "x86_64" }, { "name": "COPASI-data", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "noarch" }, { "name": "COPASI", "epoch": null, "version": "4.45.298", "release": "3.fc43", "arch": "src" } ] } RPMResults finished